HEADER RNA BINDING PROTEIN/RNA 25-AUG-15 5DEA TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN FMRP RGG MOTIF AND G- TITLE 2 QUADRUPLEX RNA, CESIUM BOUND FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SC1; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FRAGILE X MENTAL RETARDATION PROTEIN 1; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: PROTEIN FMR-1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS FRAGILE X SYNDROME, RNA STRUCTURE, RGG BOX, FMRP, G-QUADRUPLEX, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.VASILYEV,A.POLONSKAIA,J.C.DARNELL,R.B.DARNELL,D.J.PATEL,A.SERGANOV REVDAT 6 27-SEP-23 5DEA 1 LINK REVDAT 5 27-NOV-19 5DEA 1 REMARK REVDAT 4 06-SEP-17 5DEA 1 JRNL REMARK REVDAT 3 14-OCT-15 5DEA 1 JRNL REVDAT 2 30-SEP-15 5DEA 1 JRNL REVDAT 1 23-SEP-15 5DEA 0 JRNL AUTH N.VASILYEV,A.POLONSKAIA,J.C.DARNELL,R.B.DARNELL,D.J.PATEL, JRNL AUTH 2 A.SERGANOV JRNL TITL CRYSTAL STRUCTURE REVEALS SPECIFIC RECOGNITION OF A JRNL TITL 2 G-QUADRUPLEX RNA BY A BETA-TURN IN THE RGG MOTIF OF FMRP. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E5391 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26374839 JRNL DOI 10.1073/PNAS.1515737112 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 6947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8676 - 3.5211 1.00 3471 169 0.1819 0.1973 REMARK 3 2 3.5211 - 2.7973 0.95 3145 162 0.2352 0.2720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1868 REMARK 3 ANGLE : 1.287 2868 REMARK 3 CHIRALITY : 0.066 360 REMARK 3 PLANARITY : 0.007 104 REMARK 3 DIHEDRAL : 17.871 896 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3220 19.2035 -13.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.2185 REMARK 3 T33: 0.1695 T12: 0.0893 REMARK 3 T13: 0.0563 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.0104 L22: 0.0438 REMARK 3 L33: 0.0715 L12: -0.0175 REMARK 3 L13: -0.0256 L23: 0.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0993 S13: -0.1135 REMARK 3 S21: -0.0659 S22: -0.0057 S23: -0.0543 REMARK 3 S31: -0.0428 S32: -0.1319 S33: -0.0205 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0341 35.0903 -14.8954 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.3314 REMARK 3 T33: 0.0910 T12: 0.1338 REMARK 3 T13: 0.0219 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 0.0407 L22: 0.1083 REMARK 3 L33: 0.0609 L12: -0.0588 REMARK 3 L13: -0.0072 L23: -0.0269 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.0264 S13: -0.0012 REMARK 3 S21: -0.0197 S22: -0.0252 S23: 0.0110 REMARK 3 S31: -0.0473 S32: -0.1199 S33: -0.1790 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0684 24.9012 -7.6315 REMARK 3 T TENSOR REMARK 3 T11: 0.1045 T22: 0.0969 REMARK 3 T33: 0.0821 T12: 0.0861 REMARK 3 T13: 0.0318 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.1065 L22: 0.1174 REMARK 3 L33: 0.0529 L12: -0.1095 REMARK 3 L13: 0.0716 L23: -0.0791 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: -0.0476 S13: -0.0006 REMARK 3 S21: 0.0349 S22: 0.0089 S23: -0.0651 REMARK 3 S31: -0.0301 S32: -0.0335 S33: -0.2775 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6376 16.8478 -6.7776 REMARK 3 T TENSOR REMARK 3 T11: 0.0452 T22: 0.0790 REMARK 3 T33: 0.1245 T12: 0.0388 REMARK 3 T13: -0.0330 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 0.0621 L22: 0.0028 REMARK 3 L33: 0.0540 L12: 0.0093 REMARK 3 L13: -0.0580 L23: -0.0088 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.0257 S13: 0.0134 REMARK 3 S21: 0.0116 S22: 0.0166 S23: -0.0190 REMARK 3 S31: -0.0020 S32: -0.0105 S33: 0.0524 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7557 -15.9585 4.7171 REMARK 3 T TENSOR REMARK 3 T11: 0.3007 T22: 0.0325 REMARK 3 T33: 0.1041 T12: -0.1098 REMARK 3 T13: 0.0593 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.0413 L22: 0.2161 REMARK 3 L33: 0.0462 L12: -0.0110 REMARK 3 L13: 0.0329 L23: 0.0522 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: -0.0740 S13: 0.0107 REMARK 3 S21: 0.2090 S22: -0.0788 S23: 0.1050 REMARK 3 S31: 0.2617 S32: -0.0913 S33: -0.3478 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 22 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0603 -18.2415 -5.1922 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.1716 REMARK 3 T33: 0.1472 T12: -0.0957 REMARK 3 T13: -0.0986 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 0.0246 L22: 0.0189 REMARK 3 L33: 0.1182 L12: 0.0191 REMARK 3 L13: 0.0215 L23: 0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0139 S13: 0.0019 REMARK 3 S21: -0.0508 S22: -0.0138 S23: 0.0175 REMARK 3 S31: 0.0313 S32: -0.0432 S33: -0.0909 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 29 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7098 -2.5660 4.1411 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.1045 REMARK 3 T33: 0.4575 T12: -0.0119 REMARK 3 T13: 0.0269 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 0.1222 L22: 0.0338 REMARK 3 L33: 0.0155 L12: 0.0588 REMARK 3 L13: 0.0030 L23: -0.0069 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0170 S13: -0.0119 REMARK 3 S21: 0.0194 S22: 0.0006 S23: 0.0932 REMARK 3 S31: 0.0130 S32: -0.0150 S33: 0.0199 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 5 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6254 -6.4242 -3.4083 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.1409 REMARK 3 T33: 0.1118 T12: -0.0620 REMARK 3 T13: -0.0379 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.0103 L22: 0.1012 REMARK 3 L33: 0.0160 L12: 0.0020 REMARK 3 L13: 0.0063 L23: -0.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.0187 S13: 0.0034 REMARK 3 S21: -0.0221 S22: 0.0325 S23: -0.0170 REMARK 3 S31: 0.0123 S32: 0.0006 S33: 0.0364 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DEA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4938 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.797 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5DE8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.6, 0.1 M REMARK 280 AMMONIUM ACETATE, 0.1 M CESIUM CHLORIDE, 18% PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.28500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.28500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 ALA D 3 REMARK 465 ARG D 4 REMARK 465 GLY D 19 REMARK 465 ARG D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 6 CG OD1 OD2 REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 6 CG OD1 OD2 REMARK 470 ARG D 9 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U A 10 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 G A 11 O3' - P - OP1 ANGL. DEV. = 7.4 DEGREES REMARK 500 U A 28 O3' - P - OP2 ANGL. DEV. = 7.9 DEGREES REMARK 500 C C 22 N1 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 C C 22 C6 - N1 - C2 ANGL. DEV. = 2.4 DEGREES REMARK 500 C C 22 C3' - O3' - P ANGL. DEV. = 11.6 DEGREES REMARK 500 U C 23 O3' - P - O5' ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 6 46.85 -94.96 REMARK 500 ASP D 6 39.38 -94.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 6 O6 REMARK 620 2 G A 9 O6 69.8 REMARK 620 3 G A 12 O6 96.7 71.2 REMARK 620 4 G A 16 O6 59.8 109.3 69.4 REMARK 620 5 G A 18 O6 74.7 108.7 170.4 102.2 REMARK 620 6 G A 21 O6 110.3 173.9 102.8 66.6 76.9 REMARK 620 7 G A 25 O6 169.6 112.1 74.8 110.7 113.2 66.6 REMARK 620 8 G A 26 O6 118.2 71.3 113.4 177.0 74.9 113.1 71.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 103 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 6 O6 REMARK 620 2 U A 8 O4 78.2 REMARK 620 3 G A 9 O6 59.3 67.5 REMARK 620 4 A A 17 N1 81.1 75.0 129.4 REMARK 620 5 G A 18 O6 63.4 140.9 96.8 91.3 REMARK 620 6 G A 26 O6 91.0 125.8 61.6 155.8 64.8 REMARK 620 7 G A 29 O6 126.6 71.1 68.9 128.5 138.4 74.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 11 O6 REMARK 620 2 G A 12 O6 65.0 REMARK 620 3 G A 15 O6 80.5 81.8 REMARK 620 4 G A 16 O6 128.8 74.0 64.1 REMARK 620 5 G A 20 O6 122.2 158.2 79.6 87.7 REMARK 620 6 G A 21 O6 152.8 111.5 126.5 70.4 71.8 REMARK 620 7 G A 24 O6 79.3 124.9 133.4 151.7 76.6 82.3 REMARK 620 8 G A 25 O6 86.7 75.7 157.2 112.0 123.2 66.8 61.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 6 O6 REMARK 620 2 G C 9 O6 71.1 REMARK 620 3 G C 12 O6 97.7 69.4 REMARK 620 4 G C 16 O6 61.0 112.8 73.5 REMARK 620 5 G C 18 O6 74.2 106.3 171.8 102.9 REMARK 620 6 G C 21 O6 109.4 176.5 107.2 65.1 77.1 REMARK 620 7 G C 25 O6 166.2 107.0 69.3 109.2 118.9 71.7 REMARK 620 8 G C 26 O6 121.6 71.3 108.6 175.9 75.6 110.8 68.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS C 103 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 6 O6 REMARK 620 2 U C 8 O4 79.8 REMARK 620 3 G C 9 O6 60.8 71.1 REMARK 620 4 A C 17 N1 84.5 79.5 137.3 REMARK 620 5 G C 18 O6 62.2 140.6 96.7 86.7 REMARK 620 6 G C 26 O6 87.7 129.3 60.1 148.1 62.5 REMARK 620 7 G C 29 O6 128.5 76.4 68.5 133.4 135.2 74.0 REMARK 620 8 HOH C 202 O 141.5 134.9 135.9 86.6 80.0 80.5 83.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 11 O6 REMARK 620 2 G C 12 O6 67.7 REMARK 620 3 G C 15 O6 85.5 103.0 REMARK 620 4 G C 16 O6 133.7 80.7 69.2 REMARK 620 5 G C 20 O6 122.5 163.7 67.5 83.5 REMARK 620 6 G C 21 O6 151.4 110.5 121.5 70.7 67.3 REMARK 620 7 G C 24 O6 76.7 122.9 117.4 149.3 73.3 81.8 REMARK 620 8 G C 25 O6 84.2 67.4 168.1 114.4 123.6 69.8 65.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS C 103 DBREF 5DEA A 1 35 PDB 5DEA 5DEA 1 35 DBREF 5DEA B 3 20 UNP Q06787 FMR1_HUMAN 527 544 DBREF 5DEA C 1 35 PDB 5DEA 5DEA 1 35 DBREF 5DEA D 3 20 UNP Q06787 FMR1_HUMAN 527 544 SEQADV 5DEA ALA B 3 UNP Q06787 ARG 527 CONFLICT SEQADV 5DEA ALA D 3 UNP Q06787 ARG 527 CONFLICT SEQRES 1 A 35 G C U G C G G U G U G G A SEQRES 2 A 35 A G G A G U G G C U G G G SEQRES 3 A 35 U U G C G C A G C SEQRES 1 B 18 ALA ARG GLY ASP GLY ARG ARG ARG GLY GLY GLY GLY ARG SEQRES 2 B 18 GLY GLN GLY GLY ARG SEQRES 1 C 35 G C U G C G G U G U G G A SEQRES 2 C 35 A G G A G U G G C U G G G SEQRES 3 C 35 U U G C G C A G C SEQRES 1 D 18 ALA ARG GLY ASP GLY ARG ARG ARG GLY GLY GLY GLY ARG SEQRES 2 D 18 GLY GLN GLY GLY ARG HET K A 101 1 HET K A 102 1 HET CS A 103 1 HET K C 101 1 HET K C 102 1 HET CS C 103 1 HET CS C 104 1 HETNAM K POTASSIUM ION HETNAM CS CESIUM ION FORMUL 5 K 4(K 1+) FORMUL 7 CS 3(CS 1+) FORMUL 12 HOH *8(H2 O) LINK O6 G A 6 K K A 102 1555 1555 2.72 LINK O6 G A 6 CS CS A 103 1555 1555 3.33 LINK O4 U A 8 CS CS A 103 1555 1555 3.22 LINK O6 G A 9 K K A 102 1555 1555 2.87 LINK O6 G A 9 CS CS A 103 1555 1555 3.13 LINK O6 G A 11 K K A 101 1555 1555 2.77 LINK O6 G A 12 K K A 101 1555 1555 2.64 LINK O6 G A 12 K K A 102 1555 1555 2.82 LINK O6 G A 15 K K A 101 1555 1555 2.65 LINK O6 G A 16 K K A 101 1555 1555 2.83 LINK O6 G A 16 K K A 102 1555 1555 2.98 LINK N1 A A 17 CS CS A 103 1555 1555 3.13 LINK O6 G A 18 K K A 102 1555 1555 2.84 LINK O6 G A 18 CS CS A 103 1555 1555 3.07 LINK O6 G A 20 K K A 101 1555 1555 2.65 LINK O6 G A 21 K K A 101 1555 1555 2.72 LINK O6 G A 21 K K A 102 1555 1555 2.85 LINK O6 G A 24 K K A 101 1555 1555 2.65 LINK O6 G A 25 K K A 101 1555 1555 2.99 LINK O6 G A 25 K K A 102 1555 1555 2.89 LINK O6 G A 26 K K A 102 1555 1555 2.77 LINK O6 G A 26 CS CS A 103 1555 1555 3.28 LINK O6 G A 29 CS CS A 103 1555 1555 3.01 LINK O6 G C 6 K K C 101 1555 1555 2.68 LINK O6 G C 6 CS CS C 103 1555 1555 3.35 LINK O4 U C 8 CS CS C 103 1555 1555 3.10 LINK O6 G C 9 K K C 101 1555 1555 2.95 LINK O6 G C 9 CS CS C 103 1555 1555 3.13 LINK O6 G C 11 K K C 102 1555 1555 2.80 LINK O6 G C 12 K K C 101 1555 1555 2.82 LINK O6 G C 12 K K C 102 1555 1555 2.75 LINK O6 G C 15 K K C 102 1555 1555 2.72 LINK O6 G C 16 K K C 101 1555 1555 3.16 LINK O6 G C 16 K K C 102 1555 1555 2.78 LINK N1 A C 17 CS CS C 103 1555 1555 3.18 LINK O6 G C 18 K K C 101 1555 1555 2.77 LINK O6 G C 18 CS CS C 103 1555 1555 2.99 LINK O6 G C 20 K K C 102 1555 1555 2.59 LINK O6 G C 21 K K C 101 1555 1555 2.97 LINK O6 G C 21 K K C 102 1555 1555 2.91 LINK O6 G C 24 K K C 102 1555 1555 2.75 LINK O6 G C 25 K K C 101 1555 1555 2.87 LINK O6 G C 25 K K C 102 1555 1555 3.06 LINK O6 G C 26 K K C 101 1555 1555 2.70 LINK O6 G C 26 CS CS C 103 1555 1555 3.44 LINK O6 G C 29 CS CS C 103 1555 1555 2.86 LINK CS CS C 103 O HOH C 202 1555 1555 3.00 LINK CS CS C 104 O HOH C 205 1555 1555 3.22 SITE 1 AC1 9 G A 11 G A 12 G A 15 G A 16 SITE 2 AC1 9 G A 20 G A 21 G A 24 G A 25 SITE 3 AC1 9 K A 102 SITE 1 AC2 9 G A 6 G A 9 G A 12 G A 16 SITE 2 AC2 9 G A 18 G A 21 G A 25 G A 26 SITE 3 AC2 9 K A 101 SITE 1 AC3 7 G A 6 U A 8 G A 9 A A 17 SITE 2 AC3 7 G A 18 G A 26 G A 29 SITE 1 AC4 9 G C 6 G C 9 G C 12 G C 16 SITE 2 AC4 9 G C 18 G C 21 G C 25 G C 26 SITE 3 AC4 9 K C 102 SITE 1 AC5 9 G C 11 G C 12 G C 15 G C 16 SITE 2 AC5 9 G C 20 G C 21 G C 24 G C 25 SITE 3 AC5 9 K C 101 SITE 1 AC6 8 G C 6 U C 8 G C 9 A C 17 SITE 2 AC6 8 G C 18 G C 26 G C 29 HOH C 202 CRYST1 56.570 129.870 36.790 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017677 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027181 0.00000