HEADER HYDROLASE/HYDROLASE INHIBITOR 25-AUG-15 5DEB TITLE 2009 H1N1 PA ENDONUCLEASE MUTANT E119D IN COMPLEX WITH RUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ENDONUCLEASE DOMAIN (UNP RESIDUES 1-50, 73-196 CONNECTED BY COMPND 5 GGS LINKER); COMPND 6 SYNONYM: PA ENDONUCLEASE; COMPND 7 EC: 3.1.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A, PET52B KEYWDS INFLUENZA, RESISTANCE, ENDONUCLEASE INHIBITOR, VIRAL PROTEIN, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KUMAR,S.W.WHITE REVDAT 6 27-SEP-23 5DEB 1 LINK REVDAT 5 11-DEC-19 5DEB 1 REMARK REVDAT 4 13-SEP-17 5DEB 1 JRNL REMARK REVDAT 3 13-APR-16 5DEB 1 JRNL REVDAT 2 30-MAR-16 5DEB 1 JRNL REVDAT 1 16-MAR-16 5DEB 0 JRNL AUTH M.S.SONG,G.KUMAR,W.R.SHADRICK,W.ZHOU,T.JEEVAN,Z.LI, JRNL AUTH 2 P.J.SLAVISH,T.P.FABRIZIO,S.W.YOON,T.R.WEBB,R.J.WEBBY, JRNL AUTH 3 S.W.WHITE JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF INFLUENZA VARIANTS JRNL TITL 2 RESISTANT TO A VIRAL ENDONUCLEASE INHIBITOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 3669 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26976575 JRNL DOI 10.1073/PNAS.1519772113 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 835 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -1.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1481 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1338 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1999 ; 1.741 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3074 ; 1.045 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 178 ; 6.734 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;34.975 ;23.056 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 252 ;15.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 215 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1660 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 360 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 715 ; 2.068 ; 3.390 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 714 ; 2.069 ; 3.388 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 892 ; 3.267 ; 5.076 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 127.7138 111.1024 286.7179 REMARK 3 T TENSOR REMARK 3 T11: 0.5026 T22: 0.3081 REMARK 3 T33: 0.3146 T12: -0.1703 REMARK 3 T13: 0.3730 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 3.5962 L22: 0.4713 REMARK 3 L33: 1.3378 L12: -0.3626 REMARK 3 L13: 1.4987 L23: -0.4326 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.2267 S13: -0.2276 REMARK 3 S21: 0.1195 S22: -0.2949 S23: 0.0442 REMARK 3 S31: 0.4243 S32: -0.0018 S33: 0.2652 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 2 REMARK 3 ORIGIN FOR THE GROUP (A): 131.2570 107.5087 287.6538 REMARK 3 T TENSOR REMARK 3 T11: 0.0506 T22: 0.1209 REMARK 3 T33: 0.1533 T12: 0.0323 REMARK 3 T13: -0.0374 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 28.8772 L22: 199.6850 REMARK 3 L33: 2.9333 L12: 75.0790 REMARK 3 L13: 8.1678 L23: 21.7390 REMARK 3 S TENSOR REMARK 3 S11: 0.6023 S12: -0.0290 S13: -1.1370 REMARK 3 S21: 1.7359 S22: -0.1753 S23: -3.1859 REMARK 3 S31: 0.2611 S32: -0.0939 S33: -0.4270 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 1 REMARK 3 ORIGIN FOR THE GROUP (A): 128.8866 104.1714 283.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.2939 T22: 0.2120 REMARK 3 T33: 0.4513 T12: -0.1666 REMARK 3 T13: 0.0712 T23: -0.0807 REMARK 3 L TENSOR REMARK 3 L11: 1.0938 L22: 26.2844 REMARK 3 L33: 34.7963 L12: 5.3272 REMARK 3 L13: -6.1593 L23: -30.1630 REMARK 3 S TENSOR REMARK 3 S11: -0.1128 S12: -0.1773 S13: -0.2173 REMARK 3 S21: -0.2542 S22: -1.0537 S23: -1.1362 REMARK 3 S31: 0.4406 S32: 1.1140 S33: 1.1665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5DEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00522 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17236 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5CZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 1.0 M AMMONIUM REMARK 280 SULFATE, 2% W/V PEG400, 50 MM MAGNESIUM CHLORIDE, 50 MM REMARK 280 MANGANESE CHLORIDE, 200 MM RUMP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.02850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.02850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.16850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.02850 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.02850 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.16850 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.02850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.02850 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.16850 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.02850 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.02850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.16850 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.02850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.02850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.16850 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.02850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.02850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.16850 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.02850 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.02850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.16850 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.02850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.02850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.16850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 ARG A 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 65 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 VAL A 108 CG1 CG2 REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 ILE A 119 CG1 CG2 CD1 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 62.34 39.42 REMARK 500 ARG A 106 -165.06 -129.69 REMARK 500 THR A 143 -62.59 73.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 52 SER A 53 148.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 89 OD2 99.1 REMARK 620 3 ASP A 100 OD1 165.8 84.5 REMARK 620 4 ILE A 101 O 78.5 94.2 87.5 REMARK 620 5 U5P A 203 O2P 84.8 173.0 93.2 92.3 REMARK 620 6 U5P A 203 O1P 88.5 107.7 103.6 156.1 66.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD1 REMARK 620 2 U5P A 203 O1P 103.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U5P A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CGV RELATED DB: PDB REMARK 900 RELATED ID: 5CCY RELATED DB: PDB REMARK 900 RELATED ID: 5CL0 RELATED DB: PDB REMARK 900 RELATED ID: 5D2O RELATED DB: PDB REMARK 900 RELATED ID: 5D42 RELATED DB: PDB REMARK 900 RELATED ID: 5D4G RELATED DB: PDB REMARK 900 RELATED ID: 5D9J RELATED DB: PDB REMARK 900 RELATED ID: 5CZN RELATED DB: PDB REMARK 900 RELATED ID: 5DBU RELATED DB: PDB REMARK 900 RELATED ID: 5DBS RELATED DB: PDB REMARK 900 RELATED ID: 5DES RELATED DB: PDB DBREF 5DEB A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 5DEB A 54 177 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 5DEB MET A -19 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 5DEB GLY A 51 UNP C3W5S0 LINKER SEQADV 5DEB GLY A 52 UNP C3W5S0 LINKER SEQADV 5DEB SER A 53 UNP C3W5S0 LINKER SEQADV 5DEB ASP A 100 UNP C3W5S0 GLU 119 ENGINEERED MUTATION SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE ASP ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET U5P A 203 21 HETNAM MN MANGANESE (II) ION HETNAM U5P URIDINE-5'-MONOPHOSPHATE FORMUL 2 MN 2(MN 2+) FORMUL 4 U5P C9 H13 N2 O9 P FORMUL 5 HOH *23(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 GLY A 25 1 16 HELIX 3 AA3 GLU A 31 ASP A 50 1 20 HELIX 4 AA4 ASP A 64 GLY A 80 1 17 HELIX 5 AA5 GLU A 107 LYS A 120 1 14 HELIX 6 AA6 LYS A 139 ASP A 141 5 3 HELIX 7 AA7 ASP A 145 SER A 165 1 21 HELIX 8 AA8 LEU A 168 GLU A 176 1 9 SHEET 1 AA1 5 PHE A 57 ILE A 59 0 SHEET 2 AA1 5 LEU A 90 ASP A 92 -1 O TYR A 91 N GLU A 58 SHEET 3 AA1 5 ARG A 97 THR A 104 -1 O ARG A 97 N ASP A 92 SHEET 4 AA1 5 HIS A 125 SER A 130 1 O HIS A 125 N PHE A 98 SHEET 5 AA1 5 GLU A 135 ALA A 137 -1 O MET A 136 N ILE A 128 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.43 LINK OD2 ASP A 89 MN MN A 201 1555 1555 2.16 LINK OD1 ASP A 89 MN MN A 202 1555 1555 2.27 LINK OD1 ASP A 100 MN MN A 201 1555 1555 2.43 LINK O ILE A 101 MN MN A 201 1555 1555 2.07 LINK MN MN A 201 O2P U5P A 203 1555 1555 2.45 LINK MN MN A 201 O1P U5P A 203 1555 1555 2.25 LINK MN MN A 202 O1P U5P A 203 1555 1555 1.95 SITE 1 AC1 6 HIS A 41 ASP A 89 ASP A 100 ILE A 101 SITE 2 AC1 6 MN A 202 U5P A 203 SITE 1 AC2 4 HIS A 41 ASP A 89 MN A 201 U5P A 203 SITE 1 AC3 11 TYR A 24 LYS A 34 HIS A 41 ASP A 89 SITE 2 AC3 11 ASP A 100 ILE A 101 TYR A 111 LYS A 115 SITE 3 AC3 11 MN A 201 MN A 202 HOH A 307 CRYST1 90.057 90.057 134.337 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011104 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007444 0.00000