HEADER TRANSFERASE 25-AUG-15 5DEC TITLE CRYSTAL STRUCTURE OF THE SMALL ALARMONE SYNTHETASE 1 FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP PYROPHOSPHOKINASE YJBM; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 13-218; COMPND 5 SYNONYM: (P)PPGPP SYNTHASE YJBM,SMALL ALARMONE SYNTHASE 1,SAS 1; COMPND 6 EC: 2.7.6.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YJBM, BSU11600; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D(+) KEYWDS (P)PPGPP, STRINGENT RESPONSE, ALARMONE, ALLOSTERIC REGULATOR, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.STEINCHEN,A.ALTEGOER,J.S.SCHUHMACHER,G.BANGE REVDAT 4 10-JAN-24 5DEC 1 REMARK REVDAT 3 13-JUN-18 5DEC 1 REMARK REVDAT 2 04-NOV-15 5DEC 1 JRNL REVDAT 1 28-OCT-15 5DEC 0 JRNL AUTH W.STEINCHEN,J.S.SCHUHMACHER,F.ALTEGOER,C.D.FAGE, JRNL AUTH 2 V.SRINIVASAN,U.LINNE,M.A.MARAHIEL,G.BANGE JRNL TITL CATALYTIC MECHANISM AND ALLOSTERIC REGULATION OF AN JRNL TITL 2 OLIGOMERIC (P)PPGPP SYNTHETASE BY AN ALARMONE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 13348 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26460002 JRNL DOI 10.1073/PNAS.1505271112 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1685 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 64353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.6556 - 4.8194 0.97 4561 155 0.1940 0.2380 REMARK 3 2 4.8194 - 3.8256 0.98 4533 140 0.1635 0.2134 REMARK 3 3 3.8256 - 3.3421 0.98 4523 134 0.1882 0.2216 REMARK 3 4 3.3421 - 3.0365 0.96 4423 134 0.1974 0.2244 REMARK 3 5 3.0365 - 2.8189 0.98 4449 161 0.2097 0.2749 REMARK 3 6 2.8189 - 2.6527 0.98 4539 147 0.2133 0.2486 REMARK 3 7 2.6527 - 2.5198 0.96 4339 155 0.2138 0.2532 REMARK 3 8 2.5198 - 2.4102 0.96 4416 133 0.2050 0.2521 REMARK 3 9 2.4102 - 2.3174 0.98 4400 166 0.2066 0.2484 REMARK 3 10 2.3174 - 2.2374 0.99 4503 130 0.1965 0.2660 REMARK 3 11 2.2374 - 2.1674 0.99 4483 154 0.1977 0.2320 REMARK 3 12 2.1674 - 2.1055 0.97 4398 137 0.2008 0.2367 REMARK 3 13 2.1055 - 2.0501 0.96 4330 134 0.2166 0.2502 REMARK 3 14 2.0501 - 2.0000 0.97 4431 145 0.2251 0.2786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6260 REMARK 3 ANGLE : 1.256 8424 REMARK 3 CHIRALITY : 0.054 945 REMARK 3 PLANARITY : 0.006 1070 REMARK 3 DIHEDRAL : 14.801 2416 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -19.3805 16.8746 -20.5549 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0942 REMARK 3 T33: 0.1732 T12: 0.0303 REMARK 3 T13: 0.0035 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3771 L22: 0.4815 REMARK 3 L33: 1.5756 L12: -0.0108 REMARK 3 L13: 0.0869 L23: -0.0139 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.0164 S13: -0.0119 REMARK 3 S21: -0.0014 S22: 0.0048 S23: -0.0434 REMARK 3 S31: 0.0327 S32: 0.0437 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DEC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 56.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1VJ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 5.0 20% (W/V) PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.84500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 ASP A 2 REMARK 465 TYR A 33 REMARK 465 GLU A 34 REMARK 465 GLU A 110 REMARK 465 HIS A 111 REMARK 465 LYS A 112 REMARK 465 GLU A 113 REMARK 465 SER A 114 REMARK 465 GLN A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 PHE A 201 REMARK 465 SER A 202 REMARK 465 ARG A 203 REMARK 465 LYS A 204 REMARK 465 LYS A 205 REMARK 465 LYS A 206 REMARK 465 GLY A 207 REMARK 465 SER A 208 REMARK 465 GLU A 209 REMARK 465 GLN A 210 REMARK 465 GLN A 211 REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 ASP B 2 REMARK 465 TYR B 33 REMARK 465 GLU B 34 REMARK 465 ASP B 35 REMARK 465 GLU B 110 REMARK 465 GLN B 198 REMARK 465 ALA B 199 REMARK 465 ALA B 200 REMARK 465 PHE B 201 REMARK 465 SER B 202 REMARK 465 ARG B 203 REMARK 465 LYS B 204 REMARK 465 LYS B 205 REMARK 465 LYS B 206 REMARK 465 GLY B 207 REMARK 465 SER B 208 REMARK 465 GLU B 209 REMARK 465 GLN B 210 REMARK 465 GLN B 211 REMARK 465 MET C -6 REMARK 465 GLY C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 HIS C 1 REMARK 465 ASP C 2 REMARK 465 ASP C 106 REMARK 465 TYR C 107 REMARK 465 ILE C 108 REMARK 465 ALA C 109 REMARK 465 GLU C 110 REMARK 465 HIS C 111 REMARK 465 LYS C 112 REMARK 465 GLU C 113 REMARK 465 SER C 114 REMARK 465 GLY C 115 REMARK 465 TYR C 116 REMARK 465 ARG C 117 REMARK 465 GLN C 198 REMARK 465 ALA C 199 REMARK 465 ALA C 200 REMARK 465 PHE C 201 REMARK 465 SER C 202 REMARK 465 ARG C 203 REMARK 465 LYS C 204 REMARK 465 LYS C 205 REMARK 465 LYS C 206 REMARK 465 GLY C 207 REMARK 465 SER C 208 REMARK 465 GLU C 209 REMARK 465 GLN C 210 REMARK 465 GLN C 211 REMARK 465 MET D -6 REMARK 465 GLY D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 HIS D 1 REMARK 465 ASP D 2 REMARK 465 TYR D 33 REMARK 465 GLU D 34 REMARK 465 GLU D 110 REMARK 465 HIS D 111 REMARK 465 LYS D 112 REMARK 465 GLU D 113 REMARK 465 GLN D 198 REMARK 465 ALA D 199 REMARK 465 ALA D 200 REMARK 465 PHE D 201 REMARK 465 SER D 202 REMARK 465 ARG D 203 REMARK 465 LYS D 204 REMARK 465 LYS D 205 REMARK 465 LYS D 206 REMARK 465 GLY D 207 REMARK 465 SER D 208 REMARK 465 GLU D 209 REMARK 465 GLN D 210 REMARK 465 GLN D 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU D 32 OD2 ASP D 35 0.63 REMARK 500 C TYR C 33 OD1 ASP C 35 1.79 REMARK 500 C GLU D 32 OD2 ASP D 35 1.80 REMARK 500 O GLU D 32 CG ASP D 35 1.84 REMARK 500 O GLU C 32 OD2 ASP C 35 1.85 REMARK 500 O GLU C 167 O HOH C 301 1.90 REMARK 500 C GLU C 32 OD1 ASP C 35 1.93 REMARK 500 O GLY D 192 O HOH D 301 1.94 REMARK 500 N LEU C 171 O HOH C 301 1.95 REMARK 500 O LYS D 168 O HOH D 302 2.02 REMARK 500 O GLU C 32 OD1 ASP C 35 2.03 REMARK 500 O HOH D 303 O HOH D 340 2.05 REMARK 500 O HOH B 388 O HOH C 374 2.08 REMARK 500 O GLU B 32 O HOH B 301 2.10 REMARK 500 OE1 GLU B 178 O HOH B 302 2.11 REMARK 500 N ARG D 172 O HOH D 302 2.12 REMARK 500 NZ LYS C 5 O HOH C 302 2.14 REMARK 500 N GLU D 196 O HOH D 301 2.14 REMARK 500 O HOH C 383 O HOH C 390 2.18 REMARK 500 OE2 GLU B 196 NZ LYS C 168 2.18 REMARK 500 O GLU C 32 CG ASP C 35 2.18 REMARK 500 O ARG D 175 O HOH D 303 2.18 REMARK 500 OE1 GLN C 104 OH TYR C 119 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 175 OE1 GLU D 186 1556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 144.47 -176.06 REMARK 500 SER B 118 145.37 -175.88 REMARK 500 ASP C 36 -142.79 -119.42 REMARK 500 ARG D 58 65.40 -164.95 REMARK 500 SER D 118 144.75 -174.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 32 TYR C 33 148.70 REMARK 500 ARG D 58 ARG D 59 145.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 392 DISTANCE = 6.49 ANGSTROMS DBREF 5DEC A 2 211 UNP O31611 YJBM_BACSU 2 211 DBREF 5DEC B 2 211 UNP O31611 YJBM_BACSU 2 211 DBREF 5DEC C 2 211 UNP O31611 YJBM_BACSU 2 211 DBREF 5DEC D 2 211 UNP O31611 YJBM_BACSU 2 211 SEQADV 5DEC MET A -6 UNP O31611 EXPRESSION TAG SEQADV 5DEC GLY A -5 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS A -4 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS A -3 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS A -2 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS A -1 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS A 0 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS A 1 UNP O31611 EXPRESSION TAG SEQADV 5DEC ASP A 4 UNP O31611 LYS 4 CONFLICT SEQADV 5DEC LYS A 5 UNP O31611 GLN 5 CONFLICT SEQADV 5DEC MET B -6 UNP O31611 EXPRESSION TAG SEQADV 5DEC GLY B -5 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS B -4 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS B -3 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS B -2 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS B -1 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS B 0 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS B 1 UNP O31611 EXPRESSION TAG SEQADV 5DEC ASP B 4 UNP O31611 LYS 4 CONFLICT SEQADV 5DEC LYS B 5 UNP O31611 GLN 5 CONFLICT SEQADV 5DEC MET C -6 UNP O31611 EXPRESSION TAG SEQADV 5DEC GLY C -5 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS C -4 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS C -3 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS C -2 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS C -1 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS C 0 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS C 1 UNP O31611 EXPRESSION TAG SEQADV 5DEC ASP C 4 UNP O31611 LYS 4 CONFLICT SEQADV 5DEC LYS C 5 UNP O31611 GLN 5 CONFLICT SEQADV 5DEC MET D -6 UNP O31611 EXPRESSION TAG SEQADV 5DEC GLY D -5 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS D -4 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS D -3 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS D -2 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS D -1 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS D 0 UNP O31611 EXPRESSION TAG SEQADV 5DEC HIS D 1 UNP O31611 EXPRESSION TAG SEQADV 5DEC ASP D 4 UNP O31611 LYS 4 CONFLICT SEQADV 5DEC LYS D 5 UNP O31611 GLN 5 CONFLICT SEQRES 1 A 218 MET GLY HIS HIS HIS HIS HIS HIS ASP ASP ASP LYS TRP SEQRES 2 A 218 GLU ARG PHE LEU VAL PRO TYR ARG GLN ALA VAL GLU GLU SEQRES 3 A 218 LEU LYS VAL LYS LEU LYS GLY ILE ARG THR LEU TYR GLU SEQRES 4 A 218 TYR GLU ASP ASP HIS SER PRO ILE GLU PHE VAL THR GLY SEQRES 5 A 218 ARG VAL LYS PRO VAL ALA SER ILE LEU GLU LYS ALA ARG SEQRES 6 A 218 ARG LYS SER ILE PRO LEU HIS GLU ILE GLU THR MET GLN SEQRES 7 A 218 ASP ILE ALA GLY LEU ARG ILE MET CYS GLN PHE VAL ASP SEQRES 8 A 218 ASP ILE GLN ILE VAL LYS GLU MET LEU PHE ALA ARG LYS SEQRES 9 A 218 ASP PHE THR VAL VAL ASP GLN ARG ASP TYR ILE ALA GLU SEQRES 10 A 218 HIS LYS GLU SER GLY TYR ARG SER TYR HIS LEU VAL VAL SEQRES 11 A 218 LEU TYR PRO LEU GLN THR VAL SER GLY GLU LYS HIS VAL SEQRES 12 A 218 LEU VAL GLU ILE GLN ILE ARG THR LEU ALA MET ASN PHE SEQRES 13 A 218 TRP ALA THR ILE GLU HIS SER LEU ASN TYR LYS TYR SER SEQRES 14 A 218 GLY ASN ILE PRO GLU LYS VAL LYS LEU ARG LEU GLN ARG SEQRES 15 A 218 ALA SER GLU ALA ALA SER ARG LEU ASP GLU GLU MET SER SEQRES 16 A 218 GLU ILE ARG GLY GLU VAL GLN GLU ALA GLN ALA ALA PHE SEQRES 17 A 218 SER ARG LYS LYS LYS GLY SER GLU GLN GLN SEQRES 1 B 218 MET GLY HIS HIS HIS HIS HIS HIS ASP ASP ASP LYS TRP SEQRES 2 B 218 GLU ARG PHE LEU VAL PRO TYR ARG GLN ALA VAL GLU GLU SEQRES 3 B 218 LEU LYS VAL LYS LEU LYS GLY ILE ARG THR LEU TYR GLU SEQRES 4 B 218 TYR GLU ASP ASP HIS SER PRO ILE GLU PHE VAL THR GLY SEQRES 5 B 218 ARG VAL LYS PRO VAL ALA SER ILE LEU GLU LYS ALA ARG SEQRES 6 B 218 ARG LYS SER ILE PRO LEU HIS GLU ILE GLU THR MET GLN SEQRES 7 B 218 ASP ILE ALA GLY LEU ARG ILE MET CYS GLN PHE VAL ASP SEQRES 8 B 218 ASP ILE GLN ILE VAL LYS GLU MET LEU PHE ALA ARG LYS SEQRES 9 B 218 ASP PHE THR VAL VAL ASP GLN ARG ASP TYR ILE ALA GLU SEQRES 10 B 218 HIS LYS GLU SER GLY TYR ARG SER TYR HIS LEU VAL VAL SEQRES 11 B 218 LEU TYR PRO LEU GLN THR VAL SER GLY GLU LYS HIS VAL SEQRES 12 B 218 LEU VAL GLU ILE GLN ILE ARG THR LEU ALA MET ASN PHE SEQRES 13 B 218 TRP ALA THR ILE GLU HIS SER LEU ASN TYR LYS TYR SER SEQRES 14 B 218 GLY ASN ILE PRO GLU LYS VAL LYS LEU ARG LEU GLN ARG SEQRES 15 B 218 ALA SER GLU ALA ALA SER ARG LEU ASP GLU GLU MET SER SEQRES 16 B 218 GLU ILE ARG GLY GLU VAL GLN GLU ALA GLN ALA ALA PHE SEQRES 17 B 218 SER ARG LYS LYS LYS GLY SER GLU GLN GLN SEQRES 1 C 218 MET GLY HIS HIS HIS HIS HIS HIS ASP ASP ASP LYS TRP SEQRES 2 C 218 GLU ARG PHE LEU VAL PRO TYR ARG GLN ALA VAL GLU GLU SEQRES 3 C 218 LEU LYS VAL LYS LEU LYS GLY ILE ARG THR LEU TYR GLU SEQRES 4 C 218 TYR GLU ASP ASP HIS SER PRO ILE GLU PHE VAL THR GLY SEQRES 5 C 218 ARG VAL LYS PRO VAL ALA SER ILE LEU GLU LYS ALA ARG SEQRES 6 C 218 ARG LYS SER ILE PRO LEU HIS GLU ILE GLU THR MET GLN SEQRES 7 C 218 ASP ILE ALA GLY LEU ARG ILE MET CYS GLN PHE VAL ASP SEQRES 8 C 218 ASP ILE GLN ILE VAL LYS GLU MET LEU PHE ALA ARG LYS SEQRES 9 C 218 ASP PHE THR VAL VAL ASP GLN ARG ASP TYR ILE ALA GLU SEQRES 10 C 218 HIS LYS GLU SER GLY TYR ARG SER TYR HIS LEU VAL VAL SEQRES 11 C 218 LEU TYR PRO LEU GLN THR VAL SER GLY GLU LYS HIS VAL SEQRES 12 C 218 LEU VAL GLU ILE GLN ILE ARG THR LEU ALA MET ASN PHE SEQRES 13 C 218 TRP ALA THR ILE GLU HIS SER LEU ASN TYR LYS TYR SER SEQRES 14 C 218 GLY ASN ILE PRO GLU LYS VAL LYS LEU ARG LEU GLN ARG SEQRES 15 C 218 ALA SER GLU ALA ALA SER ARG LEU ASP GLU GLU MET SER SEQRES 16 C 218 GLU ILE ARG GLY GLU VAL GLN GLU ALA GLN ALA ALA PHE SEQRES 17 C 218 SER ARG LYS LYS LYS GLY SER GLU GLN GLN SEQRES 1 D 218 MET GLY HIS HIS HIS HIS HIS HIS ASP ASP ASP LYS TRP SEQRES 2 D 218 GLU ARG PHE LEU VAL PRO TYR ARG GLN ALA VAL GLU GLU SEQRES 3 D 218 LEU LYS VAL LYS LEU LYS GLY ILE ARG THR LEU TYR GLU SEQRES 4 D 218 TYR GLU ASP ASP HIS SER PRO ILE GLU PHE VAL THR GLY SEQRES 5 D 218 ARG VAL LYS PRO VAL ALA SER ILE LEU GLU LYS ALA ARG SEQRES 6 D 218 ARG LYS SER ILE PRO LEU HIS GLU ILE GLU THR MET GLN SEQRES 7 D 218 ASP ILE ALA GLY LEU ARG ILE MET CYS GLN PHE VAL ASP SEQRES 8 D 218 ASP ILE GLN ILE VAL LYS GLU MET LEU PHE ALA ARG LYS SEQRES 9 D 218 ASP PHE THR VAL VAL ASP GLN ARG ASP TYR ILE ALA GLU SEQRES 10 D 218 HIS LYS GLU SER GLY TYR ARG SER TYR HIS LEU VAL VAL SEQRES 11 D 218 LEU TYR PRO LEU GLN THR VAL SER GLY GLU LYS HIS VAL SEQRES 12 D 218 LEU VAL GLU ILE GLN ILE ARG THR LEU ALA MET ASN PHE SEQRES 13 D 218 TRP ALA THR ILE GLU HIS SER LEU ASN TYR LYS TYR SER SEQRES 14 D 218 GLY ASN ILE PRO GLU LYS VAL LYS LEU ARG LEU GLN ARG SEQRES 15 D 218 ALA SER GLU ALA ALA SER ARG LEU ASP GLU GLU MET SER SEQRES 16 D 218 GLU ILE ARG GLY GLU VAL GLN GLU ALA GLN ALA ALA PHE SEQRES 17 D 218 SER ARG LYS LYS LYS GLY SER GLU GLN GLN FORMUL 5 HOH *365(H2 O) HELIX 1 AA1 ASP A 3 GLU A 32 1 30 HELIX 2 AA2 PRO A 49 LYS A 60 1 12 HELIX 3 AA3 PRO A 63 MET A 70 5 8 HELIX 4 AA4 PHE A 82 ARG A 96 1 15 HELIX 5 AA5 LEU A 145 TYR A 161 1 17 HELIX 6 AA6 PRO A 166 GLU A 196 1 31 HELIX 7 AA7 ASP B 4 GLU B 32 1 29 HELIX 8 AA8 PRO B 49 LYS B 60 1 12 HELIX 9 AA9 GLU B 66 MET B 70 5 5 HELIX 10 AB1 PHE B 82 ARG B 96 1 15 HELIX 11 AB2 LEU B 145 TYR B 161 1 17 HELIX 12 AB3 PRO B 166 GLU B 196 1 31 HELIX 13 AB4 ASP C 4 TYR C 33 1 30 HELIX 14 AB5 PRO C 49 LYS C 60 1 12 HELIX 15 AB6 GLU C 66 MET C 70 5 5 HELIX 16 AB7 PHE C 82 ARG C 96 1 15 HELIX 17 AB8 LEU C 145 TYR C 161 1 17 HELIX 18 AB9 PRO C 166 GLU C 196 1 31 HELIX 19 AC1 ASP D 4 GLU D 32 1 29 HELIX 20 AC2 PRO D 49 ARG D 58 1 10 HELIX 21 AC3 PRO D 63 MET D 70 5 8 HELIX 22 AC4 PHE D 82 ARG D 96 1 15 HELIX 23 AC5 LEU D 145 TYR D 161 1 17 HELIX 24 AC6 PRO D 166 GLN D 195 1 30 SHEET 1 AA1 5 PHE A 42 VAL A 47 0 SHEET 2 AA1 5 ALA A 74 CYS A 80 -1 O ARG A 77 N THR A 44 SHEET 3 AA1 5 GLY A 132 THR A 144 1 O GLU A 139 N LEU A 76 SHEET 4 AA1 5 TYR A 119 THR A 129 -1 N THR A 129 O GLY A 132 SHEET 5 AA1 5 THR A 100 ASP A 106 -1 N ARG A 105 O HIS A 120 SHEET 1 AA2 5 PHE B 42 VAL B 47 0 SHEET 2 AA2 5 ALA B 74 CYS B 80 -1 O ARG B 77 N THR B 44 SHEET 3 AA2 5 GLY B 132 THR B 144 1 O GLN B 141 N ILE B 78 SHEET 4 AA2 5 TYR B 119 THR B 129 -1 N THR B 129 O GLY B 132 SHEET 5 AA2 5 THR B 100 ASP B 106 -1 N THR B 100 O LEU B 124 SHEET 1 AA3 5 PHE C 42 VAL C 47 0 SHEET 2 AA3 5 ALA C 74 CYS C 80 -1 O MET C 79 N PHE C 42 SHEET 3 AA3 5 GLY C 132 THR C 144 1 O GLN C 141 N ILE C 78 SHEET 4 AA3 5 TYR C 119 THR C 129 -1 N THR C 129 O GLY C 132 SHEET 5 AA3 5 THR C 100 ARG C 105 -1 N THR C 100 O LEU C 124 SHEET 1 AA4 5 PHE D 42 VAL D 47 0 SHEET 2 AA4 5 ALA D 74 CYS D 80 -1 O MET D 79 N PHE D 42 SHEET 3 AA4 5 GLY D 132 THR D 144 1 O GLN D 141 N ILE D 78 SHEET 4 AA4 5 TYR D 119 THR D 129 -1 N THR D 129 O GLY D 132 SHEET 5 AA4 5 THR D 100 ASP D 106 -1 N ARG D 105 O HIS D 120 CISPEP 1 GLU C 34 ASP C 35 0 -16.65 CRYST1 78.130 77.690 81.610 90.00 90.40 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012799 0.000000 0.000089 0.00000 SCALE2 0.000000 0.012872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012254 0.00000