HEADER TRANSPORT PROTEIN 25-AUG-15 5DEJ TITLE TRANSTHYRETIN NATURAL MUTANT A19D COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-145; COMPND 5 SYNONYM: ATTR,PREALBUMIN,TBPA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS TRANSTHYRETIN, IMMUNOGLOBULIN-LIKE, TRANSPORT PROTEIN, EXTRACELLULAR, KEYWDS 2 HORMONE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.M.PEREIRA,P.FERREIRA,C.ANDRADE,C.LIMA,F.PALHANO,D.FOGUEL REVDAT 3 06-MAR-24 5DEJ 1 REMARK REVDAT 2 15-JAN-20 5DEJ 1 REMARK DBREF SEQADV HELIX REVDAT 2 2 1 SHEET LINK ATOM REVDAT 1 31-AUG-16 5DEJ 0 JRNL AUTH P.FERREIRA,H.M.PEREIRA,C.ANDRADE,C.LIMA,F.PALHANO,D.FOGUEL JRNL TITL CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN NATURAL MUTANT A19D JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 46551 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5664 - 3.4514 0.91 2793 149 0.1576 0.1899 REMARK 3 2 3.4514 - 2.7397 0.96 2835 134 0.1717 0.2035 REMARK 3 3 2.7397 - 2.3935 0.97 2827 139 0.1767 0.2149 REMARK 3 4 2.3935 - 2.1747 0.97 2795 136 0.1738 0.1833 REMARK 3 5 2.1747 - 2.0188 0.92 2660 117 0.1682 0.1741 REMARK 3 6 2.0188 - 1.8998 0.97 2744 143 0.1681 0.1972 REMARK 3 7 1.8998 - 1.8046 0.98 2784 146 0.1810 0.2151 REMARK 3 8 1.8046 - 1.7261 0.98 2841 144 0.1937 0.2473 REMARK 3 9 1.7261 - 1.6596 0.99 2822 113 0.1937 0.2854 REMARK 3 10 1.6596 - 1.6024 0.98 2760 167 0.2013 0.2191 REMARK 3 11 1.6024 - 1.5523 0.98 2800 134 0.2002 0.2133 REMARK 3 12 1.5523 - 1.5079 0.98 2773 156 0.2083 0.2173 REMARK 3 13 1.5079 - 1.4682 0.93 2630 136 0.2226 0.2519 REMARK 3 14 1.4682 - 1.4324 0.97 2748 142 0.2397 0.2503 REMARK 3 15 1.4324 - 1.3998 0.97 2729 164 0.2569 0.2753 REMARK 3 16 1.3998 - 1.3700 0.98 2747 143 0.2778 0.3140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1819 REMARK 3 ANGLE : 1.073 2495 REMARK 3 CHIRALITY : 0.070 290 REMARK 3 PLANARITY : 0.006 316 REMARK 3 DIHEDRAL : 11.001 631 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9328 -0.2983 -29.9346 REMARK 3 T TENSOR REMARK 3 T11: 0.1680 T22: 0.1809 REMARK 3 T33: 0.1210 T12: 0.0262 REMARK 3 T13: -0.0057 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.2825 L22: 4.6460 REMARK 3 L33: 5.5734 L12: -0.4967 REMARK 3 L13: 2.7159 L23: -4.3229 REMARK 3 S TENSOR REMARK 3 S11: 0.2197 S12: 0.4184 S13: 0.2374 REMARK 3 S21: -0.7558 S22: -0.3996 S23: -0.2396 REMARK 3 S31: 0.3048 S32: 0.3387 S33: 0.1288 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5348 -0.9583 -25.5221 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.1499 REMARK 3 T33: 0.1455 T12: -0.0080 REMARK 3 T13: -0.0160 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 3.9355 L22: 2.1426 REMARK 3 L33: 0.9078 L12: -1.9485 REMARK 3 L13: 0.2942 L23: -0.4620 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: 0.0312 S13: -0.1151 REMARK 3 S21: 0.0214 S22: 0.0424 S23: 0.1852 REMARK 3 S31: -0.0160 S32: -0.0634 S33: -0.0101 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6421 -4.3851 -34.2165 REMARK 3 T TENSOR REMARK 3 T11: 0.1676 T22: 0.2342 REMARK 3 T33: 0.1716 T12: 0.0088 REMARK 3 T13: 0.0032 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.6681 L22: 8.3353 REMARK 3 L33: 5.1308 L12: -4.3139 REMARK 3 L13: 1.2646 L23: -3.9626 REMARK 3 S TENSOR REMARK 3 S11: 0.2776 S12: 0.6384 S13: -0.0565 REMARK 3 S21: -0.6665 S22: -0.4553 S23: -0.0979 REMARK 3 S31: 0.1901 S32: 0.1261 S33: 0.2245 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6982 7.1990 -28.9962 REMARK 3 T TENSOR REMARK 3 T11: 0.1200 T22: 0.1669 REMARK 3 T33: 0.1224 T12: 0.0294 REMARK 3 T13: -0.0525 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.3768 L22: 2.6247 REMARK 3 L33: 2.2660 L12: -1.4943 REMARK 3 L13: 0.8367 L23: -1.3611 REMARK 3 S TENSOR REMARK 3 S11: 0.1627 S12: 0.2498 S13: -0.1255 REMARK 3 S21: -0.2506 S22: -0.1262 S23: 0.3868 REMARK 3 S31: 0.0891 S32: -0.0862 S33: -0.0349 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0722 -13.8684 -20.4591 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.1263 REMARK 3 T33: 0.2274 T12: 0.0018 REMARK 3 T13: 0.0354 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 4.4626 L22: 6.3319 REMARK 3 L33: 3.3478 L12: 4.4742 REMARK 3 L13: -0.1742 L23: -2.5727 REMARK 3 S TENSOR REMARK 3 S11: -0.1760 S12: 0.1146 S13: -0.3333 REMARK 3 S21: -0.1579 S22: 0.0997 S23: 0.0019 REMARK 3 S31: 0.3681 S32: 0.0345 S33: 0.0473 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5749 -2.7022 -17.2630 REMARK 3 T TENSOR REMARK 3 T11: 0.1685 T22: 0.1408 REMARK 3 T33: 0.1453 T12: 0.0079 REMARK 3 T13: -0.0154 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.1963 L22: 5.4358 REMARK 3 L33: 1.7983 L12: -0.9241 REMARK 3 L13: 0.1463 L23: -3.0489 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: 0.0627 S13: -0.2077 REMARK 3 S21: -0.0857 S22: 0.1305 S23: 0.0980 REMARK 3 S31: 0.0622 S32: -0.1355 S33: -0.0721 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5051 8.6237 -27.4151 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.1618 REMARK 3 T33: 0.1603 T12: -0.0030 REMARK 3 T13: -0.0446 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.3022 L22: 3.0895 REMARK 3 L33: 3.5776 L12: -0.8912 REMARK 3 L13: 0.2940 L23: -3.1607 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: 0.2026 S13: 0.1676 REMARK 3 S21: -0.0093 S22: -0.1566 S23: 0.0191 REMARK 3 S31: -0.1687 S32: 0.0716 S33: 0.0308 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8076 3.4399 -22.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.1545 REMARK 3 T33: 0.1201 T12: -0.0144 REMARK 3 T13: -0.0261 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.9081 L22: 3.8139 REMARK 3 L33: 7.0496 L12: -0.0927 REMARK 3 L13: -0.1503 L23: -5.1801 REMARK 3 S TENSOR REMARK 3 S11: -0.1044 S12: 0.1378 S13: 0.0794 REMARK 3 S21: -0.2953 S22: -0.0354 S23: -0.1545 REMARK 3 S31: 0.1853 S32: -0.0293 S33: 0.1129 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5703 2.5036 -1.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1233 REMARK 3 T33: 0.1366 T12: -0.0006 REMARK 3 T13: 0.0577 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 6.5204 L22: 3.9288 REMARK 3 L33: 1.1517 L12: 2.9687 REMARK 3 L13: -0.5337 L23: -0.6778 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: -0.2463 S13: -0.3657 REMARK 3 S21: 0.6371 S22: -0.1045 S23: -0.0373 REMARK 3 S31: -0.1447 S32: -0.0340 S33: -0.0138 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8485 12.6455 -5.5713 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1703 REMARK 3 T33: 0.1538 T12: -0.0297 REMARK 3 T13: -0.0016 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 4.1705 L22: 0.0411 REMARK 3 L33: 5.8044 L12: -0.4100 REMARK 3 L13: -4.9288 L23: 0.4836 REMARK 3 S TENSOR REMARK 3 S11: 0.0775 S12: -0.4324 S13: 0.5111 REMARK 3 S21: 0.1484 S22: 0.1160 S23: -0.0876 REMARK 3 S31: -0.0591 S32: 0.5027 S33: -0.3602 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5963 0.5606 -8.0004 REMARK 3 T TENSOR REMARK 3 T11: 0.1799 T22: 0.1676 REMARK 3 T33: 0.2531 T12: -0.0142 REMARK 3 T13: -0.0350 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 4.1344 L22: 4.7351 REMARK 3 L33: 1.5827 L12: 2.4960 REMARK 3 L13: 0.4182 L23: 0.2245 REMARK 3 S TENSOR REMARK 3 S11: -0.1643 S12: 0.2554 S13: 0.1470 REMARK 3 S21: -0.4393 S22: 0.2336 S23: 0.6924 REMARK 3 S31: -0.0080 S32: -0.2160 S33: 0.0367 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6433 5.4978 -0.2638 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.1519 REMARK 3 T33: 0.1423 T12: 0.0092 REMARK 3 T13: 0.0235 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.7132 L22: 3.0570 REMARK 3 L33: 0.9050 L12: 1.6583 REMARK 3 L13: -0.0172 L23: 0.4701 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: -0.2642 S13: 0.1086 REMARK 3 S21: 0.1214 S22: -0.1417 S23: 0.1301 REMARK 3 S31: 0.0111 S32: 0.1292 S33: -0.0041 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3294 -2.1366 -2.9646 REMARK 3 T TENSOR REMARK 3 T11: 0.1536 T22: 0.1167 REMARK 3 T33: 0.1480 T12: -0.0021 REMARK 3 T13: 0.0321 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.5333 L22: 4.8372 REMARK 3 L33: 2.2038 L12: 2.8230 REMARK 3 L13: -1.2491 L23: -1.9843 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: -0.1000 S13: 0.0324 REMARK 3 S21: 0.1063 S22: -0.0838 S23: 0.2838 REMARK 3 S31: 0.0558 S32: 0.0924 S33: -0.0138 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7657 15.4925 -14.3034 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.0892 REMARK 3 T33: 0.1567 T12: -0.0071 REMARK 3 T13: 0.0099 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 3.3663 L22: 2.8568 REMARK 3 L33: 8.0390 L12: -2.4921 REMARK 3 L13: 0.3816 L23: 0.8367 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.0534 S13: 0.3121 REMARK 3 S21: 0.0910 S22: -0.0166 S23: -0.0368 REMARK 3 S31: -0.1788 S32: -0.0700 S33: -0.0629 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6863 -2.7050 -10.3324 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.1280 REMARK 3 T33: 0.1169 T12: 0.0132 REMARK 3 T13: 0.0474 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 3.9413 L22: 3.3531 REMARK 3 L33: 4.1538 L12: 1.2992 REMARK 3 L13: -3.6666 L23: -0.4473 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0089 S13: 0.0114 REMARK 3 S21: -0.9016 S22: -0.0661 S23: -0.3373 REMARK 3 S31: 0.2544 S32: 0.1058 S33: 0.0518 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3298 -14.7938 -0.6367 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.2537 REMARK 3 T33: 0.5395 T12: -0.0013 REMARK 3 T13: 0.1466 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 1.9433 L22: 3.6777 REMARK 3 L33: 9.1610 L12: -1.0118 REMARK 3 L13: 3.5708 L23: 0.8812 REMARK 3 S TENSOR REMARK 3 S11: 0.4298 S12: -0.0535 S13: -0.3305 REMARK 3 S21: -0.0572 S22: 0.1304 S23: -0.6309 REMARK 3 S31: 0.1461 S32: 0.6443 S33: -0.3066 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1359 0.0311 -8.8327 REMARK 3 T TENSOR REMARK 3 T11: 0.1449 T22: 0.1238 REMARK 3 T33: 0.1334 T12: 0.0087 REMARK 3 T13: 0.0068 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.2896 L22: 3.4753 REMARK 3 L33: 6.9296 L12: 1.6711 REMARK 3 L13: -2.0070 L23: -4.7191 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.1211 S13: -0.1623 REMARK 3 S21: -0.1303 S22: -0.1692 S23: -0.0180 REMARK 3 S31: 0.2145 S32: 0.1790 S33: 0.0784 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 41.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 200 MM CACL2 AND 28% REMARK 280 PEG400, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.96500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.96500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.87500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 59 CG OD1 OD2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ARG A 124 NE CZ NH1 NH2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 LEU B 102 CD2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 124 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 82 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 121 O HOH B 201 1.96 REMARK 500 O CYS A 30 O HOH A 301 1.99 REMARK 500 O HOH B 205 O HOH B 238 1.99 REMARK 500 O HOH A 369 O HOH A 401 2.02 REMARK 500 O HOH B 237 O HOH B 313 2.04 REMARK 500 O HOH A 305 O HOH A 319 2.05 REMARK 500 OE2 GLU A 83 O HOH A 302 2.07 REMARK 500 O HOH B 251 O HOH B 267 2.08 REMARK 500 OH TYR A 136 O HOH A 303 2.11 REMARK 500 O HOH B 201 O HOH B 298 2.13 REMARK 500 O HOH A 362 O HOH A 381 2.16 REMARK 500 O HOH B 206 O HOH B 209 2.17 REMARK 500 O HOH B 207 O HOH B 272 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 304 O HOH B 315 3455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 120 -165.07 -165.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 410 DISTANCE = 5.85 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CA A 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 86 OE1 REMARK 620 2 ASP A 119 O 90.6 REMARK 620 3 ASP A 119 OD1 69.3 67.9 REMARK 620 4 HOH A 347 O 78.7 156.3 125.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TFB RELATED DB: PDB REMARK 900 TRANSTHYRETIN NATURAL MUTANT A25T DBREF 5DEJ A 30 145 UNP P02766 TTHY_HUMAN 30 145 DBREF 5DEJ B 30 145 UNP P02766 TTHY_HUMAN 30 145 SEQADV 5DEJ ASP A 39 UNP P02766 ALA 39 ENGINEERED MUTATION SEQADV 5DEJ ASP B 39 UNP P02766 ALA 39 ENGINEERED MUTATION SEQRES 1 A 116 CYS PRO LEU MET VAL LYS VAL LEU ASP ASP VAL ARG GLY SEQRES 2 A 116 SER PRO ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS SEQRES 3 A 116 ALA ALA ASP ASP THR TRP GLU PRO PHE ALA SER GLY LYS SEQRES 4 A 116 THR SER GLU SER GLY GLU LEU HIS GLY LEU THR THR GLU SEQRES 5 A 116 GLU GLU PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP SEQRES 6 A 116 THR LYS SER TYR TRP LYS ALA LEU GLY ILE SER PRO PHE SEQRES 7 A 116 HIS GLU HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SER SEQRES 8 A 116 GLY PRO ARG ARG TYR THR ILE ALA ALA LEU LEU SER PRO SEQRES 9 A 116 TYR SER TYR SER THR THR ALA VAL VAL THR ASN PRO SEQRES 1 B 116 CYS PRO LEU MET VAL LYS VAL LEU ASP ASP VAL ARG GLY SEQRES 2 B 116 SER PRO ALA ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS SEQRES 3 B 116 ALA ALA ASP ASP THR TRP GLU PRO PHE ALA SER GLY LYS SEQRES 4 B 116 THR SER GLU SER GLY GLU LEU HIS GLY LEU THR THR GLU SEQRES 5 B 116 GLU GLU PHE VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP SEQRES 6 B 116 THR LYS SER TYR TRP LYS ALA LEU GLY ILE SER PRO PHE SEQRES 7 B 116 HIS GLU HIS ALA GLU VAL VAL PHE THR ALA ASN ASP SER SEQRES 8 B 116 GLY PRO ARG ARG TYR THR ILE ALA ALA LEU LEU SER PRO SEQRES 9 B 116 TYR SER TYR SER THR THR ALA VAL VAL THR ASN PRO HET CA A 201 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ FORMUL 4 HOH *232(H2 O) HELIX 1 AA1 ASP A 94 GLY A 103 1 10 HELIX 2 AA2 ASP B 94 LEU B 102 1 9 SHEET 1 AA1 8 SER A 43 PRO A 44 0 SHEET 2 AA1 8 LEU A 32 ASP A 38 -1 N ASP A 38 O SER A 43 SHEET 3 AA1 8 ARG A 124 SER A 132 1 O LEU A 131 N LEU A 37 SHEET 4 AA1 8 SER A 135 THR A 143 -1 O THR A 143 N ARG A 124 SHEET 5 AA1 8 SER B 135 THR B 143 -1 O THR B 138 N TYR A 136 SHEET 6 AA1 8 ARG B 124 SER B 132 -1 N LEU B 130 O SER B 137 SHEET 7 AA1 8 LEU B 32 ASP B 38 1 N LEU B 37 O LEU B 131 SHEET 8 AA1 8 SER B 43 PRO B 44 -1 O SER B 43 N ASP B 38 SHEET 1 AA2 8 GLU A 74 LEU A 75 0 SHEET 2 AA2 8 LEU A 32 ASP A 38 -1 N VAL A 34 O LEU A 75 SHEET 3 AA2 8 ARG A 124 SER A 132 1 O LEU A 131 N LEU A 37 SHEET 4 AA2 8 SER A 135 THR A 143 -1 O THR A 143 N ARG A 124 SHEET 5 AA2 8 SER B 135 THR B 143 -1 O THR B 138 N TYR A 136 SHEET 6 AA2 8 ARG B 124 SER B 132 -1 N LEU B 130 O SER B 137 SHEET 7 AA2 8 LEU B 32 ASP B 38 1 N LEU B 37 O LEU B 131 SHEET 8 AA2 8 GLU B 74 LEU B 75 -1 O LEU B 75 N VAL B 34 SHEET 1 AA3 8 TRP A 61 LYS A 68 0 SHEET 2 AA3 8 ALA A 49 LYS A 55 -1 N VAL A 52 O ALA A 65 SHEET 3 AA3 8 GLY A 87 ILE A 93 -1 O GLU A 92 N HIS A 51 SHEET 4 AA3 8 HIS A 108 ALA A 117 -1 O VAL A 113 N VAL A 91 SHEET 5 AA3 8 HIS B 108 ALA B 117 -1 O GLU B 109 N VAL A 114 SHEET 6 AA3 8 GLY B 87 ILE B 93 -1 N GLY B 87 O ALA B 117 SHEET 7 AA3 8 ALA B 49 LYS B 55 -1 N HIS B 51 O GLU B 92 SHEET 8 AA3 8 TRP B 61 LYS B 68 -1 O ALA B 65 N VAL B 52 LINK OE1 GLU A 86 CA CA A 201 1555 1555 2.81 LINK O ASP A 119 CA CA A 201 1555 1555 2.35 LINK OD1 ASP A 119 CA CA A 201 1555 1555 2.69 LINK CA CA A 201 O HOH A 347 1555 1555 2.38 CRYST1 85.930 41.750 62.740 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011637 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015939 0.00000