HEADER TRANSPORT PROTEIN, RECEPTOR 26-AUG-15 5DEX TITLE CRYSTAL STRUCTURE OF GLUN1/GLUN2A NMDA RECEPTOR AGONIST BINDING TITLE 2 DOMAINS WITH GLYCINE AND ANTAGONIST, PHENYL-ACEPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 394-544, 663-800; COMPND 5 SYNONYM: GLUN1,GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1,N-METHYL-D- COMPND 6 ASPARTATE RECEPTOR SUBUNIT NR1,NMD-R1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 402-539, 661-802; COMPND 12 SYNONYM: GLUN2A,GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-1,N-METHYL COMPND 13 D-ASPARTATE RECEPTOR SUBTYPE 2A,NR2A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIN1, NMDAR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: RAT; SOURCE 12 ORGANISM_TAXID: 10116; SOURCE 13 GENE: GRIN2A; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSPORT PROTEIN, RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR T.-C.MOU,P.CONTI,A.PINTO,L.TAMBORINI,S.R.SPRANG,K.B.HANSEN REVDAT 5 27-SEP-23 5DEX 1 REMARK REVDAT 4 25-DEC-19 5DEX 1 REMARK REVDAT 3 23-AUG-17 5DEX 1 JRNL REVDAT 2 02-AUG-17 5DEX 1 JRNL REMARK REVDAT 1 14-SEP-16 5DEX 0 JRNL AUTH G.E.LIND,T.C.MOU,L.TAMBORINI,M.G.POMPER,C.DE MICHELI, JRNL AUTH 2 P.CONTI,A.PINTO,K.B.HANSEN JRNL TITL STRUCTURAL BASIS OF SUBUNIT SELECTIVITY FOR COMPETITIVE NMDA JRNL TITL 2 RECEPTOR ANTAGONISTS WITH PREFERENCE FOR GLUN2A OVER GLUN2B JRNL TITL 3 SUBUNITS. JRNL REF PROC. NATL. ACAD. SCI. 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28760974 JRNL DOI 10.1073/PNAS.1707752114 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 23150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9693 - 5.5532 1.00 1780 149 0.1747 0.2503 REMARK 3 2 5.5532 - 4.4457 1.00 1710 143 0.1535 0.2223 REMARK 3 3 4.4457 - 3.8951 1.00 1683 140 0.1551 0.2350 REMARK 3 4 3.8951 - 3.5441 1.00 1680 140 0.1816 0.2651 REMARK 3 5 3.5441 - 3.2930 1.00 1659 139 0.2038 0.2910 REMARK 3 6 3.2930 - 3.1006 0.99 1634 136 0.2250 0.2947 REMARK 3 7 3.1006 - 2.9466 1.00 1653 137 0.2432 0.3161 REMARK 3 8 2.9466 - 2.8192 0.99 1643 138 0.2410 0.3415 REMARK 3 9 2.8192 - 2.7113 0.99 1621 135 0.2593 0.3515 REMARK 3 10 2.7113 - 2.6183 0.97 1605 135 0.2841 0.3477 REMARK 3 11 2.6183 - 2.5368 0.96 1573 129 0.2805 0.3532 REMARK 3 12 2.5368 - 2.4646 0.96 1571 131 0.2855 0.3758 REMARK 3 13 2.4646 - 2.4000 0.95 1555 131 0.3022 0.3707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4479 REMARK 3 ANGLE : 1.184 6047 REMARK 3 CHIRALITY : 0.063 669 REMARK 3 PLANARITY : 0.008 772 REMARK 3 DIHEDRAL : 16.303 2688 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25970 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4NF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE, PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.31450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.28600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.65100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.28600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.31450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.65100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 ASN A 48 REMARK 465 ASP A 49 REMARK 465 THR A 50 REMARK 465 SER A 51 REMARK 465 PRO A 52 REMARK 465 GLY A 53 REMARK 465 SER A 54 REMARK 465 PRO A 55 REMARK 465 ARG A 56 REMARK 465 HIS A 57 REMARK 465 ASN A 99 REMARK 465 ASN A 100 REMARK 465 SER A 101 REMARK 465 TYR A 287 REMARK 465 GLN A 288 REMARK 465 GLU A 289 REMARK 465 CYS A 290 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 LEU B 28 REMARK 465 ASN B 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 162 CG CD REMARK 470 SER B 236 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 142 O CYS B 229 1.71 REMARK 500 O HOH A 1103 O HOH A 1119 1.91 REMARK 500 OE2 GLU A 105 O HOH A 1101 2.05 REMARK 500 O HOH A 1103 O HOH A 1116 2.09 REMARK 500 ND2 ASN A 102 O HOH A 1102 2.09 REMARK 500 O HOH A 1152 O HOH B 443 2.10 REMARK 500 O VAL A 98 O HOH A 1103 2.14 REMARK 500 O GLU B 133 O HOH B 401 2.18 REMARK 500 OE1 GLN B 258 O HOH B 402 2.18 REMARK 500 O ILE A 43 O HOH A 1104 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -172.67 -171.31 REMARK 500 GLN A 13 88.64 -166.14 REMARK 500 PRO A 21 161.75 -48.43 REMARK 500 ASN A 79 75.16 57.52 REMARK 500 MET A 120 135.02 -179.14 REMARK 500 PRO A 124 64.07 -68.91 REMARK 500 GLU A 130 -70.04 -50.63 REMARK 500 ARG A 163 4.11 -64.74 REMARK 500 SER A 168 138.53 -177.38 REMARK 500 THR A 175 -149.73 -125.50 REMARK 500 ASN A 216 -9.92 61.00 REMARK 500 VAL A 285 -60.38 -92.17 REMARK 500 GLU B 16 90.16 -172.02 REMARK 500 GLU B 30 67.23 38.97 REMARK 500 ARG B 34 -150.31 75.61 REMARK 500 ASN B 35 20.84 -76.56 REMARK 500 LYS B 75 72.36 57.90 REMARK 500 LYS B 87 -108.88 -110.82 REMARK 500 ASN B 97 -158.48 -105.49 REMARK 500 THR B 243 -146.94 -169.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1177 DISTANCE = 5.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5E0 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DDN RELATED DB: PDB REMARK 900 RELATED ID: 5DDX RELATED DB: PDB REMARK 900 RELATED ID: 5DE4 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THIS SEQUENCE CORRESPONDS TO THE NCBI REFERENCE REMARK 999 SEQUENCE NP_036705.3 FOR GLUN2A. RESIDUE THR 758 IN THIS SEQUENCE REMARK 999 IS A SER758 IN UNP Q00959. DBREF 5DEX A 2 152 UNP P35439 NMDZ1_RAT 394 544 DBREF 5DEX A 155 292 UNP P35439 NMDZ1_RAT 663 800 DBREF 5DEX B 5 142 UNP Q00959 NMDE1_RAT 402 539 DBREF 5DEX B 145 286 UNP Q00959 NMDE1_RAT 661 802 SEQADV 5DEX GLY A 1 UNP P35439 EXPRESSION TAG SEQADV 5DEX GLY A 153 UNP P35439 LINKER SEQADV 5DEX THR A 154 UNP P35439 LINKER SEQADV 5DEX SER B 4 UNP Q00959 EXPRESSION TAG SEQADV 5DEX GLY B 143 UNP Q00959 LINKER SEQADV 5DEX THR B 144 UNP Q00959 LINKER SEQADV 5DEX THR B 242 UNP Q00959 SER 758 SEE REMARK 999 SEQRES 1 A 292 GLY MET SER THR ARG LEU LYS ILE VAL THR ILE HIS GLN SEQRES 2 A 292 GLU PRO PHE VAL TYR VAL LYS PRO THR MET SER ASP GLY SEQRES 3 A 292 THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO VAL SEQRES 4 A 292 LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER PRO SEQRES 5 A 292 GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR GLY SEQRES 6 A 292 PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR MET SEQRES 7 A 292 ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY LYS SEQRES 8 A 292 PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS LYS SEQRES 9 A 292 GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY GLN SEQRES 10 A 292 ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN GLU SEQRES 11 A 292 ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS TYR SEQRES 12 A 292 GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG ILE SEQRES 13 A 292 THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER ASP SEQRES 14 A 292 LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL ASP SEQRES 15 A 292 ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET TYR SEQRES 16 A 292 ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA GLU SEQRES 17 A 292 ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA PHE SEQRES 18 A 292 ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER GLN SEQRES 19 A 292 LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE ARG SEQRES 20 A 292 SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO TRP SEQRES 21 A 292 LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS GLU SEQRES 22 A 292 ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL ARG SEQRES 23 A 292 TYR GLN GLU CYS ASP SER SEQRES 1 B 283 SER ASP ASP ASN HIS LEU SER ILE VAL THR LEU GLU GLU SEQRES 2 B 283 ALA PRO PHE VAL ILE VAL GLU ASP ILE ASP PRO LEU THR SEQRES 3 B 283 GLU THR CYS VAL ARG ASN THR VAL PRO CYS ARG LYS PHE SEQRES 4 B 283 VAL LYS ILE ASN ASN SER THR ASN GLU GLY MET ASN VAL SEQRES 5 B 283 LYS LYS CYS CYS LYS GLY PHE CYS ILE ASP ILE LEU LYS SEQRES 6 B 283 LYS LEU SER ARG THR VAL LYS PHE THR TYR ASP LEU TYR SEQRES 7 B 283 LEU VAL THR ASN GLY LYS HIS GLY LYS LYS VAL ASN ASN SEQRES 8 B 283 VAL TRP ASN GLY MET ILE GLY GLU VAL VAL TYR GLN ARG SEQRES 9 B 283 ALA VAL MET ALA VAL GLY SER LEU THR ILE ASN GLU GLU SEQRES 10 B 283 ARG SER GLU VAL VAL ASP PHE SER VAL PRO PHE VAL GLU SEQRES 11 B 283 THR GLY ILE SER VAL MET VAL SER ARG GLY THR GLN VAL SEQRES 12 B 283 THR GLY LEU SER ASP LYS LYS PHE GLN ARG PRO HIS ASP SEQRES 13 B 283 TYR SER PRO PRO PHE ARG PHE GLY THR VAL PRO ASN GLY SEQRES 14 B 283 SER THR GLU ARG ASN ILE ARG ASN ASN TYR PRO TYR MET SEQRES 15 B 283 HIS GLN TYR MET THR ARG PHE ASN GLN ARG GLY VAL GLU SEQRES 16 B 283 ASP ALA LEU VAL SER LEU LYS THR GLY LYS LEU ASP ALA SEQRES 17 B 283 PHE ILE TYR ASP ALA ALA VAL LEU ASN TYR LYS ALA GLY SEQRES 18 B 283 ARG ASP GLU GLY CYS LYS LEU VAL THR ILE GLY SER GLY SEQRES 19 B 283 TYR ILE PHE ALA THR THR GLY TYR GLY ILE ALA LEU GLN SEQRES 20 B 283 LYS GLY SER PRO TRP LYS ARG GLN ILE ASP LEU ALA LEU SEQRES 21 B 283 LEU GLN PHE VAL GLY ASP GLY GLU MET GLU GLU LEU GLU SEQRES 22 B 283 THR LEU TRP LEU THR GLY ILE CYS HIS ASN HET GLY A1001 5 HET 5E0 B 301 20 HETNAM GLY GLYCINE HETNAM 5E0 5-[(2R)-2-AMINO-2-CARBOXYETHYL]-1-PHENYL-1H-PYRAZOLE-3- HETNAM 2 5E0 CARBOXYLIC ACID FORMUL 3 GLY C2 H5 N O2 FORMUL 4 5E0 C13 H13 N3 O4 FORMUL 5 HOH *149(H2 O) HELIX 1 AA1 GLY A 65 MET A 78 1 14 HELIX 2 AA2 ASN A 107 SER A 115 1 9 HELIX 3 AA3 ASN A 128 GLN A 133 1 6 HELIX 4 AA4 ASP A 161 ASN A 166 1 6 HELIX 5 AA5 SER A 179 ARG A 187 1 9 HELIX 6 AA6 GLN A 188 GLU A 190 5 3 HELIX 7 AA7 LEU A 191 GLU A 199 1 9 HELIX 8 AA8 SER A 205 ASP A 215 1 11 HELIX 9 AA9 SER A 225 LYS A 235 1 11 HELIX 10 AB1 TRP A 260 ASN A 274 1 15 HELIX 11 AB2 GLY A 275 TRP A 284 1 10 HELIX 12 AB3 GLY B 61 VAL B 74 1 14 HELIX 13 AB4 ASN B 97 TYR B 105 1 9 HELIX 14 AB5 ASN B 118 GLU B 123 1 6 HELIX 15 AB6 ASP B 151 ARG B 156 1 6 HELIX 16 AB7 PRO B 157 TYR B 160 5 4 HELIX 17 AB8 GLY B 172 TYR B 182 1 11 HELIX 18 AB9 TYR B 182 THR B 190 1 9 HELIX 19 AC1 ARG B 191 ASN B 193 5 3 HELIX 20 AC2 GLY B 196 THR B 206 1 11 HELIX 21 AC3 ALA B 216 ARG B 225 1 10 HELIX 22 AC4 GLY B 235 ILE B 239 5 5 HELIX 23 AC5 TRP B 255 ASP B 269 1 15 HELIX 24 AC6 GLY B 270 LEU B 280 1 11 SHEET 1 AA110 TYR A 18 LYS A 20 0 SHEET 2 AA110 VAL A 59 TYR A 64 -1 O TYR A 64 N TYR A 18 SHEET 3 AA110 VAL A 42 GLY A 46 -1 N VAL A 42 O CYS A 63 SHEET 4 AA110 TYR A 82 LEU A 86 1 O LEU A 86 N THR A 45 SHEET 5 AA110 LEU A 6 THR A 10 1 N ILE A 8 O GLU A 83 SHEET 6 AA110 MET A 120 THR A 126 1 O VAL A 122 N VAL A 9 SHEET 7 AA110 PHE A 246 ARG A 255 -1 O GLY A 253 N ILE A 121 SHEET 8 AA110 LYS A 142 LYS A 151 -1 N GLN A 144 O SER A 248 SHEET 9 AA110 ALA A 220 ASP A 224 -1 O PHE A 221 N LEU A 149 SHEET 10 AA110 TYR A 173 ALA A 174 1 N ALA A 174 O ILE A 222 SHEET 1 AA2 4 ILE A 135 PHE A 137 0 SHEET 2 AA2 4 PHE A 246 ARG A 255 -1 O MET A 254 N GLU A 136 SHEET 3 AA2 4 LYS A 142 LYS A 151 -1 N GLN A 144 O SER A 248 SHEET 4 AA2 4 LEU A 238 THR A 240 -1 O VAL A 239 N VAL A 150 SHEET 1 AA3 2 GLN A 95 ARG A 97 0 SHEET 2 AA3 2 LYS A 104 TRP A 106 -1 O GLU A 105 N GLU A 96 SHEET 1 AA4 5 THR B 77 LEU B 82 0 SHEET 2 AA4 5 HIS B 8 THR B 13 1 N LEU B 9 O THR B 77 SHEET 3 AA4 5 MET B 110 ALA B 111 1 O MET B 110 N VAL B 12 SHEET 4 AA4 5 ALA B 248 GLN B 250 -1 O ALA B 248 N ALA B 111 SHEET 5 AA4 5 VAL B 125 PHE B 127 -1 N ASP B 126 O LEU B 249 SHEET 1 AA5 3 ILE B 21 ASP B 24 0 SHEET 2 AA5 3 GLY B 52 LYS B 60 -1 O LYS B 60 N ILE B 21 SHEET 3 AA5 3 VAL B 37 LYS B 44 -1 N LYS B 41 O VAL B 55 SHEET 1 AA6 2 LYS B 91 VAL B 92 0 SHEET 2 AA6 2 VAL B 95 TRP B 96 -1 O VAL B 95 N VAL B 92 SHEET 1 AA7 4 PHE B 166 GLY B 167 0 SHEET 2 AA7 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA7 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 AA7 4 LEU B 231 THR B 233 -1 O VAL B 232 N VAL B 140 SHEET 1 AA8 4 PHE B 166 GLY B 167 0 SHEET 2 AA8 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA8 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 AA8 4 PHE B 240 TYR B 245 -1 O PHE B 240 N ILE B 136 SSBOND 1 CYS A 28 CYS A 62 1555 1555 2.03 SSBOND 2 CYS A 44 CYS A 63 1555 1555 2.05 SSBOND 3 CYS B 32 CYS B 58 1555 1555 2.01 SSBOND 4 CYS B 39 CYS B 59 1555 1555 2.03 SSBOND 5 CYS B 229 CYS B 284 1555 1555 2.01 CISPEP 1 GLU A 14 PRO A 15 0 3.40 CISPEP 2 ALA B 17 PRO B 18 0 0.71 CISPEP 3 SER B 161 PRO B 162 0 8.52 SITE 1 AC1 8 PHE A 92 PRO A 124 LEU A 125 THR A 126 SITE 2 AC1 8 ARG A 131 SER A 179 SER A 180 ASP A 224 SITE 1 AC2 15 HIS B 88 SER B 114 THR B 116 ARG B 121 SITE 2 AC2 15 THR B 134 GLY B 135 ILE B 136 GLY B 172 SITE 3 AC2 15 SER B 173 THR B 174 TYR B 214 ASP B 215 SITE 4 AC2 15 HOH B 407 HOH B 408 HOH B 421 CRYST1 54.629 87.302 122.572 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008158 0.00000