HEADER TRANSFERASE/TRANSFERASE INHIBITOR 27-AUG-15 5DG5 TITLE CRYSTAL STRUCTURE OF THE TYROSINE KINASE DOMAIN OF THE HEPATOCYTE TITLE 2 GROWTH FACTOR RECEPTOR C-MET IN COMPLEX WITH ALTIRATINIB ANALOG DP- TITLE 3 4157 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HGF RECEPTOR,HGF/SF RECEPTOR,PROTO-ONCOGENE C-MET,SCATTER COMPND 5 FACTOR RECEPTOR,SF RECEPTOR,TYROSINE-PROTEIN KINASE MET; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MET; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TYROSINE KINASE DOMAIN, HEPATOCYTE GROWTH FACTOR RECEPTOR C-MET, C- KEYWDS 2 MET, ALTIRATINIB ANALOG, DP-4157, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.D.SMITH,M.D.KAUFMAN,C.B.LEARY,B.A.TURNER,S.A.WISE,Y.M.AHN, AUTHOR 2 R.J.BOOTH,T.M.CALDWELL,C.L.ENSINGER,M.M.HOOD,W.-P.LU,T.W.PATT, AUTHOR 3 W.C.PATT,T.J.RUTKOSKI,T.SAMARAKOON,H.TELIKEPALLI,L.VOGETI,S.VOGETI, AUTHOR 4 K.M.YATES,L.CHUN,L.J.STEWART,M.CLARE,D.L.FLYNN REVDAT 2 27-SEP-23 5DG5 1 COMPND REMARK HETNAM REVDAT 1 31-AUG-16 5DG5 0 JRNL AUTH B.D.SMITH,M.D.KAUFMAN,C.B.LEARY,B.A.TURNER,S.C.WISE,Y.M.AHN, JRNL AUTH 2 R.J.BOOTH,T.M.CALDWELL,C.L.ENSINGER,M.M.HOOD,W.P.LU, JRNL AUTH 3 T.W.PATT,W.C.PATT,T.J.RUTKOSKI,T.SAMARAKOON,H.TELIKEPALLI, JRNL AUTH 4 L.VOGETI,S.VOGETI,K.M.YATES,L.CHUN,L.J.STEWART,M.CLARE, JRNL AUTH 5 D.L.FLYNN JRNL TITL ALTIRATINIB INHIBITS TUMOR GROWTH, INVASION, ANGIOGENESIS, JRNL TITL 2 AND MICROENVIRONMENT-MEDIATED DRUG RESISTANCE VIA BALANCED JRNL TITL 3 INHIBITION OF MET, TIE2, AND VEGFR2. JRNL REF MOL.CANCER THER. V. 14 2023 2015 JRNL REFN ESSN 1538-8514 JRNL PMID 26285778 JRNL DOI 10.1158/1535-7163.MCT-14-1105 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 21913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1161 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4603 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : -3.30000 REMARK 3 B33 (A**2) : 4.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.674 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.157 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4812 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4537 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6554 ; 1.196 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10405 ; 0.893 ; 2.988 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 5.515 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;37.051 ;23.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 767 ;16.758 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.521 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 737 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5390 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1131 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2376 ; 2.258 ; 4.376 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2375 ; 2.255 ; 4.375 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2967 ; 3.823 ; 6.562 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1050 1346 B 1050 1346 17561 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5DG5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2G15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 9.5MG/ML IN 20 MM TRIS PH REMARK 280 8.5, 100MM NACL, 14MM 2-MERCAPTOETHANOL WITH 5-MOLAR EXCESS OF REMARK 280 COMPOUND; CRYSTALLIZATION CONDITION: 1.0M DIAMMONIUM HYDROGEN REMARK 280 PHOSPHATE, 0.2M SODIUM CHLORIDE, 0.1M CITRATE PH 5.0 AND 7.5% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.94000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1029 REMARK 465 GLY A 1030 REMARK 465 HIS A 1031 REMARK 465 HIS A 1032 REMARK 465 HIS A 1033 REMARK 465 HIS A 1034 REMARK 465 HIS A 1035 REMARK 465 HIS A 1036 REMARK 465 MET A 1037 REMARK 465 GLY A 1038 REMARK 465 ASP A 1039 REMARK 465 SER A 1040 REMARK 465 ASP A 1041 REMARK 465 ILE A 1042 REMARK 465 SER A 1043 REMARK 465 SER A 1044 REMARK 465 PRO A 1045 REMARK 465 LEU A 1046 REMARK 465 LEU A 1047 REMARK 465 GLN A 1048 REMARK 465 ASN A 1049 REMARK 465 MET B 1029 REMARK 465 GLY B 1030 REMARK 465 HIS B 1031 REMARK 465 HIS B 1032 REMARK 465 HIS B 1033 REMARK 465 HIS B 1034 REMARK 465 HIS B 1035 REMARK 465 HIS B 1036 REMARK 465 MET B 1037 REMARK 465 GLY B 1038 REMARK 465 ASP B 1039 REMARK 465 SER B 1040 REMARK 465 ASP B 1041 REMARK 465 ILE B 1042 REMARK 465 SER B 1043 REMARK 465 SER B 1044 REMARK 465 PRO B 1045 REMARK 465 LEU B 1046 REMARK 465 LEU B 1047 REMARK 465 GLN B 1048 REMARK 465 ASN B 1049 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A1051 CG1 CG2 REMARK 470 GLN A1064 CG CD OE1 NE2 REMARK 470 ASP A1099 CG OD1 OD2 REMARK 470 ASN A1100 CG OD1 ND2 REMARK 470 ASP A1101 CG OD1 OD2 REMARK 470 LYS A1103 CG CD CE NZ REMARK 470 ARG A1114 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1132 CG CD CE NZ REMARK 470 ARG A1148 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1150 CG CD OE1 OE2 REMARK 470 GLU A1172 CG CD OE1 OE2 REMARK 470 ASN A1175 CG OD1 ND2 REMARK 470 LYS A1232 CG CD CE NZ REMARK 470 LYS A1240 CG CD CE NZ REMARK 470 LYS A1244 CG CD CE NZ REMARK 470 LYS A1259 CG CD CE NZ REMARK 470 ASP A1286 CG OD1 OD2 REMARK 470 LYS A1318 CG CD CE NZ REMARK 470 VAL B1051 CG1 CG2 REMARK 470 GLN B1064 CG CD OE1 NE2 REMARK 470 ASP B1099 CG OD1 OD2 REMARK 470 ASN B1100 CG OD1 ND2 REMARK 470 ASP B1101 CG OD1 OD2 REMARK 470 LYS B1103 CG CD CE NZ REMARK 470 ARG B1114 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1150 CG CD OE1 OE2 REMARK 470 ASN B1175 CG OD1 ND2 REMARK 470 LYS B1232 CG CD CE NZ REMARK 470 LYS B1240 CG CD CE NZ REMARK 470 LYS B1244 CG CD CE NZ REMARK 470 LYS B1259 CG CD CE NZ REMARK 470 LYS B1318 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 1176 NH2 ARG B 1279 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1100 -18.48 -48.79 REMARK 500 ASN A1175 74.48 -119.23 REMARK 500 ARG A1203 -30.01 83.37 REMARK 500 TYR A1284 61.05 38.75 REMARK 500 PRO B1073 -3.18 -53.07 REMARK 500 ASN B1100 -17.09 -47.92 REMARK 500 ASN B1175 73.16 -119.56 REMARK 500 ARG B1203 -30.49 83.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5B4 A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5B4 B 1401 DBREF 5DG5 A 1038 1346 UNP P08581 MET_HUMAN 1056 1364 DBREF 5DG5 B 1038 1346 UNP P08581 MET_HUMAN 1056 1364 SEQADV 5DG5 MET A 1029 UNP P08581 INITIATING METHIONINE SEQADV 5DG5 GLY A 1030 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS A 1031 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS A 1032 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS A 1033 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS A 1034 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS A 1035 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS A 1036 UNP P08581 EXPRESSION TAG SEQADV 5DG5 MET A 1037 UNP P08581 EXPRESSION TAG SEQADV 5DG5 MET B 1029 UNP P08581 INITIATING METHIONINE SEQADV 5DG5 GLY B 1030 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS B 1031 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS B 1032 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS B 1033 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS B 1034 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS B 1035 UNP P08581 EXPRESSION TAG SEQADV 5DG5 HIS B 1036 UNP P08581 EXPRESSION TAG SEQADV 5DG5 MET B 1037 UNP P08581 EXPRESSION TAG SEQRES 1 A 318 MET GLY HIS HIS HIS HIS HIS HIS MET GLY ASP SER ASP SEQRES 2 A 318 ILE SER SER PRO LEU LEU GLN ASN THR VAL HIS ILE ASP SEQRES 3 A 318 LEU SER ALA LEU ASN PRO GLU LEU VAL GLN ALA VAL GLN SEQRES 4 A 318 HIS VAL VAL ILE GLY PRO SER SER LEU ILE VAL HIS PHE SEQRES 5 A 318 ASN GLU VAL ILE GLY ARG GLY HIS PHE GLY CYS VAL TYR SEQRES 6 A 318 HIS GLY THR LEU LEU ASP ASN ASP GLY LYS LYS ILE HIS SEQRES 7 A 318 CYS ALA VAL LYS SER LEU ASN ARG ILE THR ASP ILE GLY SEQRES 8 A 318 GLU VAL SER GLN PHE LEU THR GLU GLY ILE ILE MET LYS SEQRES 9 A 318 ASP PHE SER HIS PRO ASN VAL LEU SER LEU LEU GLY ILE SEQRES 10 A 318 CYS LEU ARG SER GLU GLY SER PRO LEU VAL VAL LEU PRO SEQRES 11 A 318 TYR MET LYS HIS GLY ASP LEU ARG ASN PHE ILE ARG ASN SEQRES 12 A 318 GLU THR HIS ASN PRO THR VAL LYS ASP LEU ILE GLY PHE SEQRES 13 A 318 GLY LEU GLN VAL ALA LYS GLY MET LYS TYR LEU ALA SER SEQRES 14 A 318 LYS LYS PHE VAL HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 15 A 318 MET LEU ASP GLU LYS PHE THR VAL LYS VAL ALA ASP PHE SEQRES 16 A 318 GLY LEU ALA ARG ASP MET TYR ASP LYS GLU TYR TYR SER SEQRES 17 A 318 VAL HIS ASN LYS THR GLY ALA LYS LEU PRO VAL LYS TRP SEQRES 18 A 318 MET ALA LEU GLU SER LEU GLN THR GLN LYS PHE THR THR SEQRES 19 A 318 LYS SER ASP VAL TRP SER PHE GLY VAL LEU LEU TRP GLU SEQRES 20 A 318 LEU MET THR ARG GLY ALA PRO PRO TYR PRO ASP VAL ASN SEQRES 21 A 318 THR PHE ASP ILE THR VAL TYR LEU LEU GLN GLY ARG ARG SEQRES 22 A 318 LEU LEU GLN PRO GLU TYR CYS PRO ASP PRO LEU TYR GLU SEQRES 23 A 318 VAL MET LEU LYS CYS TRP HIS PRO LYS ALA GLU MET ARG SEQRES 24 A 318 PRO SER PHE SER GLU LEU VAL SER ARG ILE SER ALA ILE SEQRES 25 A 318 PHE SER THR PHE ILE GLY SEQRES 1 B 318 MET GLY HIS HIS HIS HIS HIS HIS MET GLY ASP SER ASP SEQRES 2 B 318 ILE SER SER PRO LEU LEU GLN ASN THR VAL HIS ILE ASP SEQRES 3 B 318 LEU SER ALA LEU ASN PRO GLU LEU VAL GLN ALA VAL GLN SEQRES 4 B 318 HIS VAL VAL ILE GLY PRO SER SER LEU ILE VAL HIS PHE SEQRES 5 B 318 ASN GLU VAL ILE GLY ARG GLY HIS PHE GLY CYS VAL TYR SEQRES 6 B 318 HIS GLY THR LEU LEU ASP ASN ASP GLY LYS LYS ILE HIS SEQRES 7 B 318 CYS ALA VAL LYS SER LEU ASN ARG ILE THR ASP ILE GLY SEQRES 8 B 318 GLU VAL SER GLN PHE LEU THR GLU GLY ILE ILE MET LYS SEQRES 9 B 318 ASP PHE SER HIS PRO ASN VAL LEU SER LEU LEU GLY ILE SEQRES 10 B 318 CYS LEU ARG SER GLU GLY SER PRO LEU VAL VAL LEU PRO SEQRES 11 B 318 TYR MET LYS HIS GLY ASP LEU ARG ASN PHE ILE ARG ASN SEQRES 12 B 318 GLU THR HIS ASN PRO THR VAL LYS ASP LEU ILE GLY PHE SEQRES 13 B 318 GLY LEU GLN VAL ALA LYS GLY MET LYS TYR LEU ALA SER SEQRES 14 B 318 LYS LYS PHE VAL HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 15 B 318 MET LEU ASP GLU LYS PHE THR VAL LYS VAL ALA ASP PHE SEQRES 16 B 318 GLY LEU ALA ARG ASP MET TYR ASP LYS GLU TYR TYR SER SEQRES 17 B 318 VAL HIS ASN LYS THR GLY ALA LYS LEU PRO VAL LYS TRP SEQRES 18 B 318 MET ALA LEU GLU SER LEU GLN THR GLN LYS PHE THR THR SEQRES 19 B 318 LYS SER ASP VAL TRP SER PHE GLY VAL LEU LEU TRP GLU SEQRES 20 B 318 LEU MET THR ARG GLY ALA PRO PRO TYR PRO ASP VAL ASN SEQRES 21 B 318 THR PHE ASP ILE THR VAL TYR LEU LEU GLN GLY ARG ARG SEQRES 22 B 318 LEU LEU GLN PRO GLU TYR CYS PRO ASP PRO LEU TYR GLU SEQRES 23 B 318 VAL MET LEU LYS CYS TRP HIS PRO LYS ALA GLU MET ARG SEQRES 24 B 318 PRO SER PHE SER GLU LEU VAL SER ARG ILE SER ALA ILE SEQRES 25 B 318 PHE SER THR PHE ILE GLY HET 5B4 A1401 37 HET 5B4 B1401 37 HETNAM 5B4 N-(2,5-DIFLUORO-4-{[2-(1-METHYL-1H-PYRAZOL-4-YL) HETNAM 2 5B4 PYRIDIN-4-YL]OXY}PHENYL)-N'-(4-FLUOROPHENYL) HETNAM 3 5B4 CYCLOPROPANE-1,1-DICARBOXAM IDE HETSYN 5B4 ALTIRATINIB ANALOG DP-4157 FORMUL 3 5B4 2(C26 H20 F3 N5 O3) FORMUL 5 HOH *33(H2 O) HELIX 1 AA1 ASP A 1054 LEU A 1058 5 5 HELIX 2 AA2 ASN A 1059 HIS A 1068 1 10 HELIX 3 AA3 ASP A 1117 ASP A 1133 1 17 HELIX 4 AA4 ASP A 1164 ASN A 1171 1 8 HELIX 5 AA5 THR A 1177 LYS A 1198 1 22 HELIX 6 AA6 ALA A 1206 ARG A 1208 5 3 HELIX 7 AA7 PRO A 1246 MET A 1250 5 5 HELIX 8 AA8 ALA A 1251 GLN A 1258 1 8 HELIX 9 AA9 THR A 1261 THR A 1278 1 18 HELIX 10 AB1 ASP A 1291 GLN A 1298 1 8 HELIX 11 AB2 PRO A 1309 TRP A 1320 1 12 HELIX 12 AB3 LYS A 1323 ARG A 1327 5 5 HELIX 13 AB4 SER A 1329 THR A 1343 1 15 HELIX 14 AB5 ASP B 1054 LEU B 1058 5 5 HELIX 15 AB6 ASN B 1059 HIS B 1068 1 10 HELIX 16 AB7 ASP B 1117 ASP B 1133 1 17 HELIX 17 AB8 ASP B 1164 ASN B 1171 1 8 HELIX 18 AB9 THR B 1177 LYS B 1198 1 22 HELIX 19 AC1 ALA B 1206 ARG B 1208 5 3 HELIX 20 AC2 PRO B 1246 MET B 1250 5 5 HELIX 21 AC3 ALA B 1251 GLN B 1258 1 8 HELIX 22 AC4 THR B 1261 THR B 1278 1 18 HELIX 23 AC5 ASP B 1291 GLN B 1298 1 8 HELIX 24 AC6 PRO B 1309 TRP B 1320 1 12 HELIX 25 AC7 LYS B 1323 ARG B 1327 5 5 HELIX 26 AC8 SER B 1329 THR B 1343 1 15 SHEET 1 AA1 5 LEU A1076 ARG A1086 0 SHEET 2 AA1 5 GLY A1090 LEU A1098 -1 O VAL A1092 N ILE A1084 SHEET 3 AA1 5 LYS A1104 LEU A1112 -1 O ILE A1105 N LEU A1097 SHEET 4 AA1 5 LEU A1154 PRO A1158 -1 O VAL A1155 N LYS A1110 SHEET 5 AA1 5 GLY A1144 CYS A1146 -1 N GLY A1144 O VAL A1156 SHEET 1 AA2 2 CYS A1210 LEU A1212 0 SHEET 2 AA2 2 VAL A1218 VAL A1220 -1 O LYS A1219 N MET A1211 SHEET 1 AA3 2 LEU A1225 ALA A1226 0 SHEET 2 AA3 2 TYR A1235 SER A1236 -1 O TYR A1235 N ALA A1226 SHEET 1 AA4 5 LEU B1076 ARG B1086 0 SHEET 2 AA4 5 GLY B1090 LEU B1098 -1 O VAL B1092 N ILE B1084 SHEET 3 AA4 5 LYS B1104 LEU B1112 -1 O ILE B1105 N LEU B1097 SHEET 4 AA4 5 LEU B1154 PRO B1158 -1 O VAL B1155 N LYS B1110 SHEET 5 AA4 5 GLY B1144 CYS B1146 -1 N GLY B1144 O VAL B1156 SHEET 1 AA5 2 CYS B1210 LEU B1212 0 SHEET 2 AA5 2 VAL B1218 VAL B1220 -1 O LYS B1219 N MET B1211 SHEET 1 AA6 2 LEU B1225 ALA B1226 0 SHEET 2 AA6 2 TYR B1235 SER B1236 -1 O TYR B1235 N ALA B1226 SITE 1 AC1 20 VAL A1092 ALA A1108 LYS A1110 MET A1131 SITE 2 AC1 20 VAL A1139 LEU A1140 LEU A1157 PRO A1158 SITE 3 AC1 20 TYR A1159 MET A1160 LYS A1161 GLY A1163 SITE 4 AC1 20 LEU A1195 PHE A1200 MET A1211 VAL A1220 SITE 5 AC1 20 ALA A1221 ASP A1222 PHE A1223 TYR A1234 SITE 1 AC2 20 VAL B1092 ALA B1108 LYS B1110 MET B1131 SITE 2 AC2 20 VAL B1139 LEU B1140 LEU B1157 PRO B1158 SITE 3 AC2 20 TYR B1159 MET B1160 LYS B1161 GLY B1163 SITE 4 AC2 20 LEU B1195 PHE B1200 MET B1211 VAL B1220 SITE 5 AC2 20 ALA B1221 ASP B1222 PHE B1223 TYR B1234 CRYST1 37.130 115.880 90.160 90.00 92.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026932 0.000000 0.001372 0.00000 SCALE2 0.000000 0.008630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011106 0.00000