HEADER TRANSPORT PROTEIN 28-AUG-15 5DGX TITLE 1.73 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE ABC-ATPASE DOMAIN TITLE 2 (RESIDUES 357-609) OF LIPID A TRANSPORT PROTEIN (MSBA) FROM TITLE 3 FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4 IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPID A EXPORT ATP-BINDING/PERMEASE PROTEIN MSBA; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS SOURCE 3 (STRAIN FSC 198); SOURCE 4 ORGANISM_TAXID: 393115; SOURCE 5 STRAIN: FSC 198; SOURCE 6 GENE: MSBA, FTF0109; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS LIPID A TRANSPORT PROTEIN, ABC TRANSPORTER, ATP-BINDING AND MEMBRANE KEYWDS 2 PROTEIN, FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4, CSGID, KEYWDS 3 STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 4 DISEASES, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,G.MINASOV,I.DUBROVSKA,O.KIRYUKHINA,S.GRIMSHAW, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 27-SEP-23 5DGX 1 REMARK REVDAT 1 16-SEP-15 5DGX 0 JRNL AUTH A.S.HALAVATY,G.MINASOV,I.DUBROVSKA,O.KIRYUKHINA,S.GRIMSHAW, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.73 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE ABC-ATPASE JRNL TITL 2 DOMAIN (RESIDUES 357-609) OF LIPID A TRANSPORT PROTEIN JRNL TITL 3 (MSBA) FROM FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4 JRNL TITL 4 IN COMPLEX WITH ADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 22233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1199 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1726 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1781 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.25000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 3.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1892 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1814 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2566 ; 1.614 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4175 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 3.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;37.662 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;10.243 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2181 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 424 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 358 A 452 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3079 41.0123 41.4769 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.0576 REMARK 3 T33: 0.0278 T12: 0.0041 REMARK 3 T13: 0.0231 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.9530 L22: 0.9181 REMARK 3 L33: 1.3552 L12: 0.0050 REMARK 3 L13: -0.6036 L23: 0.0924 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.0708 S13: 0.0539 REMARK 3 S21: 0.1275 S22: -0.0295 S23: -0.0752 REMARK 3 S31: -0.1034 S32: 0.0301 S33: -0.0108 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 453 A 487 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9012 37.6764 20.8002 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.2386 REMARK 3 T33: 0.0294 T12: -0.0180 REMARK 3 T13: 0.0427 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 5.4966 L22: 3.5509 REMARK 3 L33: 3.2076 L12: -2.9428 REMARK 3 L13: -0.4179 L23: -0.6349 REMARK 3 S TENSOR REMARK 3 S11: 0.1808 S12: 0.3426 S13: 0.2170 REMARK 3 S21: -0.3943 S22: -0.0318 S23: -0.2200 REMARK 3 S31: 0.0473 S32: 0.1098 S33: -0.1490 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 488 A 557 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4655 35.2177 27.0332 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.1540 REMARK 3 T33: 0.0383 T12: -0.0156 REMARK 3 T13: 0.0301 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 3.8737 L22: 1.1573 REMARK 3 L33: 1.5361 L12: -0.8839 REMARK 3 L13: 1.9204 L23: -0.6924 REMARK 3 S TENSOR REMARK 3 S11: 0.0780 S12: 0.2548 S13: -0.2986 REMARK 3 S21: -0.0815 S22: 0.0355 S23: 0.0839 REMARK 3 S31: 0.2060 S32: 0.0062 S33: -0.1135 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 558 A 609 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8174 25.1466 49.4527 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.0180 REMARK 3 T33: 0.0340 T12: 0.0032 REMARK 3 T13: 0.0420 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.9401 L22: 2.4260 REMARK 3 L33: 1.2322 L12: 0.5748 REMARK 3 L13: -0.6753 L23: -0.9021 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.0128 S13: -0.1010 REMARK 3 S21: 0.2374 S22: -0.0517 S23: 0.0373 REMARK 3 S31: 0.1008 S32: -0.0194 S33: 0.0475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : SINGLE DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 2FGK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 8.2 MG/ML IN 10 MM TRIS-HCL REMARK 280 PH 8.3 0.5 MM TCEP 10 MM ADP 10 MM MGCL2 CRYSTALLIZATION: THE REMARK 280 CLASSICS II F11 (71): 0.2 M NACL 0.1 M BIS-TRIS PH 6.5 25% (W/V) REMARK 280 PEG 3350 CRYO: CRYSTALLIZATION CONDITION, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.44300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 354 REMARK 465 ASN A 355 REMARK 465 ALA A 356 REMARK 465 GLU A 357 REMARK 465 LEU A 469 REMARK 465 SER A 470 REMARK 465 ARG A 471 REMARK 465 ALA A 535 REMARK 465 THR A 536 REMARK 465 SER A 537 REMARK 465 ALA A 538 REMARK 465 LEU A 539 REMARK 465 ASP A 540 REMARK 465 ASN A 541 REMARK 465 GLU A 542 REMARK 465 SER A 543 REMARK 465 GLU A 544 REMARK 465 ARG A 545 REMARK 465 VAL A 546 REMARK 465 VAL A 547 REMARK 465 GLN A 548 REMARK 465 GLN A 549 REMARK 465 ALA A 550 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 609 O HOH A 801 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 493 -7.15 -59.90 REMARK 500 SER A 553 -75.28 -53.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP91077 RELATED DB: TARGETTRACK DBREF 5DGX A 357 609 UNP Q14JW6 MSBA_FRAT1 357 609 SEQADV 5DGX SER A 354 UNP Q14JW6 EXPRESSION TAG SEQADV 5DGX ASN A 355 UNP Q14JW6 EXPRESSION TAG SEQADV 5DGX ALA A 356 UNP Q14JW6 EXPRESSION TAG SEQRES 1 A 256 SER ASN ALA GLU LYS GLU THR GLY SER LYS GLU LEU ALA SEQRES 2 A 256 LYS VAL ASP GLY ASN VAL THR ILE LYS ASP LEU SER PHE SEQRES 3 A 256 ALA PHE GLY GLU HIS LYS VAL LEU SER GLY VAL SER VAL SEQRES 4 A 256 ASP ILE LYS ALA GLY GLN THR VAL ALA PHE VAL GLY LYS SEQRES 5 A 256 SER GLY SER GLY LYS THR THR LEU THR SER ILE ILE SER SEQRES 6 A 256 ARG PHE TYR THR GLN HIS GLU GLY GLU ILE LEU LEU ASP SEQRES 7 A 256 GLY VAL ASP THR ARG GLU LEU THR LEU GLU ASN LEU ARG SEQRES 8 A 256 SER HIS LEU SER ILE VAL SER GLN ASN VAL HIS LEU PHE SEQRES 9 A 256 ASP ASP THR VAL TYR ASN ASN ILE ALA PHE GLY LEU SER SEQRES 10 A 256 ARG GLU VAL SER GLU GLU GLU VAL ILE ASP ALA LEU LYS SEQRES 11 A 256 ARG ALA ASN ALA TYR GLU PHE VAL GLN GLU LEU SER ASP SEQRES 12 A 256 GLY ILE ASN THR ASN ILE GLY ASN ASN GLY SER LYS LEU SEQRES 13 A 256 SER GLY GLY GLN ARG GLN ARG ILE SER ILE ALA ARG ALA SEQRES 14 A 256 LEU LEU LYS ASN ALA PRO VAL LEU ILE PHE ASP GLU ALA SEQRES 15 A 256 THR SER ALA LEU ASP ASN GLU SER GLU ARG VAL VAL GLN SEQRES 16 A 256 GLN ALA LEU GLU SER LEU THR LYS SER CYS THR THR ILE SEQRES 17 A 256 VAL ILE ALA HIS ARG LEU SER THR VAL GLU ASN ALA ASP SEQRES 18 A 256 LYS ILE VAL VAL MET ASP GLY GLY ARG VAL VAL GLU SER SEQRES 19 A 256 GLY LYS HIS GLN GLU LEU LEU GLU GLN GLY GLY LEU TYR SEQRES 20 A 256 THR ARG LEU TYR GLN SER GLY LEU GLN HET ADP A 701 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *193(H2 O) HELIX 1 AA1 GLY A 409 SER A 418 1 10 HELIX 2 AA2 ARG A 436 LEU A 438 5 3 HELIX 3 AA3 THR A 439 HIS A 446 1 8 HELIX 4 AA4 THR A 460 PHE A 467 1 8 HELIX 5 AA5 SER A 474 ALA A 485 1 12 HELIX 6 AA6 ALA A 487 GLU A 493 1 7 HELIX 7 AA7 ASP A 496 THR A 500 5 5 HELIX 8 AA8 GLY A 503 SER A 507 5 5 HELIX 9 AA9 SER A 510 ASN A 526 1 17 HELIX 10 AB1 GLU A 552 SER A 557 1 6 HELIX 11 AB2 ARG A 566 ALA A 573 1 8 HELIX 12 AB3 LYS A 589 GLN A 596 1 8 HELIX 13 AB4 GLY A 598 SER A 606 1 9 SHEET 1 AA1 4 HIS A 384 ILE A 394 0 SHEET 2 AA1 4 VAL A 372 PHE A 381 -1 N VAL A 372 O ILE A 394 SHEET 3 AA1 4 GLU A 425 LEU A 430 -1 O LEU A 429 N THR A 373 SHEET 4 AA1 4 VAL A 433 ASP A 434 -1 O VAL A 433 N LEU A 430 SHEET 1 AA2 6 LEU A 447 VAL A 450 0 SHEET 2 AA2 6 VAL A 529 ASP A 533 1 O ILE A 531 N SER A 448 SHEET 3 AA2 6 THR A 559 ILE A 563 1 O THR A 559 N LEU A 530 SHEET 4 AA2 6 THR A 399 VAL A 403 1 N PHE A 402 O VAL A 562 SHEET 5 AA2 6 LYS A 575 ASP A 580 1 O MET A 579 N VAL A 403 SHEET 6 AA2 6 ARG A 583 GLY A 588 -1 O VAL A 585 N VAL A 578 SITE 1 AC1 19 PHE A 381 HIS A 384 VAL A 386 SER A 406 SITE 2 AC1 19 GLY A 407 SER A 408 GLY A 409 LYS A 410 SITE 3 AC1 19 THR A 411 THR A 412 GLU A 472 HOH A 842 SITE 4 AC1 19 HOH A 870 HOH A 875 HOH A 881 HOH A 884 SITE 5 AC1 19 HOH A 900 HOH A 903 HOH A 905 CRYST1 39.597 70.886 46.647 90.00 103.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025254 0.000000 0.006188 0.00000 SCALE2 0.000000 0.014107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022072 0.00000