HEADER TRANSFERASE/TRANSFERASE INHIBITOR 29-AUG-15 5DGZ TITLE DISCOVERY OF 3,5-SUBSTITUTED 6-AZAINDAZOLES AS POTENT PAN-PIM TITLE 2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 120-404); COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PIM-1, KINASE, ATP-COMPETITIVE, STRUCTURE-BASED DRUG DESIGN, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,H.WALLWEBER,M.STEFFEK REVDAT 3 06-MAR-24 5DGZ 1 JRNL REMARK REVDAT 2 11-NOV-15 5DGZ 1 JRNL REVDAT 1 28-OCT-15 5DGZ 0 JRNL AUTH H.HU,X.WANG,G.K.CHAN,J.H.CHANG,S.DO,J.DRUMMOND,A.EBENS, JRNL AUTH 2 W.LEE,J.LY,J.P.LYSSIKATOS,J.MURRAY,J.G.MOFFAT,Q.CHAO,V.TSUI, JRNL AUTH 3 H.WALLWEBER,A.KOLESNIKOV JRNL TITL DISCOVERY OF 3,5-SUBSTITUTED 6-AZAINDAZOLES AS POTENT JRNL TITL 2 PAN-PIM INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 5258 2015 JRNL REFN ESSN 1464-3405 JRNL PMID 26459208 JRNL DOI 10.1016/J.BMCL.2015.09.052 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2103 - 4.2757 1.00 2959 142 0.1474 0.1851 REMARK 3 2 4.2757 - 3.3950 1.00 2902 160 0.1650 0.1990 REMARK 3 3 3.3950 - 2.9662 1.00 2916 149 0.2013 0.2270 REMARK 3 4 2.9662 - 2.6951 1.00 2871 167 0.2416 0.2511 REMARK 3 5 2.6951 - 2.5020 1.00 2884 147 0.2449 0.2861 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2325 REMARK 3 ANGLE : 0.634 3158 REMARK 3 CHIRALITY : 0.028 332 REMARK 3 PLANARITY : 0.003 408 REMARK 3 DIHEDRAL : 14.238 845 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 33:49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8096 8.7150 3.1166 REMARK 3 T TENSOR REMARK 3 T11: 0.7429 T22: 0.3690 REMARK 3 T33: 0.7401 T12: 0.0464 REMARK 3 T13: 0.0722 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 3.3363 L22: 3.8271 REMARK 3 L33: 6.8225 L12: 0.1041 REMARK 3 L13: -0.9593 L23: 0.4217 REMARK 3 S TENSOR REMARK 3 S11: 0.2142 S12: -0.4181 S13: 1.2057 REMARK 3 S21: 0.0519 S22: -0.0954 S23: -0.4006 REMARK 3 S31: -1.0118 S32: -0.0241 S33: -0.0826 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 50:73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4382 5.8484 4.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.5065 T22: 0.3279 REMARK 3 T33: 0.3222 T12: 0.0208 REMARK 3 T13: 0.0423 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 4.8558 L22: 6.0993 REMARK 3 L33: 4.2554 L12: -3.1167 REMARK 3 L13: -2.3101 L23: -1.2245 REMARK 3 S TENSOR REMARK 3 S11: -0.1351 S12: -0.4783 S13: 0.4077 REMARK 3 S21: 0.2991 S22: 0.2969 S23: 0.0636 REMARK 3 S31: -0.4908 S32: -0.2105 S33: -0.1973 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 74:96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9977 -3.8371 13.8426 REMARK 3 T TENSOR REMARK 3 T11: 0.8903 T22: 0.6330 REMARK 3 T33: 0.5484 T12: -0.0025 REMARK 3 T13: 0.2265 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 5.8878 L22: 5.3025 REMARK 3 L33: 4.0643 L12: -2.8958 REMARK 3 L13: 1.6226 L23: -0.6238 REMARK 3 S TENSOR REMARK 3 S11: -0.2557 S12: -0.7230 S13: -0.3144 REMARK 3 S21: 1.0964 S22: 0.4203 S23: 0.9666 REMARK 3 S31: -0.1747 S32: -0.9672 S33: -0.0448 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 97:140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4908 -3.6897 2.1799 REMARK 3 T TENSOR REMARK 3 T11: 0.4201 T22: 0.2922 REMARK 3 T33: 0.3154 T12: -0.0553 REMARK 3 T13: 0.0633 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 2.5668 L22: 4.6485 REMARK 3 L33: 3.2958 L12: -1.9153 REMARK 3 L13: -0.7441 L23: 2.4131 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.0885 S13: 0.3000 REMARK 3 S21: 0.1900 S22: 0.2292 S23: -0.2518 REMARK 3 S31: -0.2889 S32: 0.1365 S33: -0.1794 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 141:204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2779 -15.2809 3.3848 REMARK 3 T TENSOR REMARK 3 T11: 0.3818 T22: 0.2684 REMARK 3 T33: 0.3157 T12: -0.0417 REMARK 3 T13: -0.0186 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.5981 L22: 1.5894 REMARK 3 L33: 2.9334 L12: 0.0030 REMARK 3 L13: -0.9588 L23: -0.1351 REMARK 3 S TENSOR REMARK 3 S11: 0.2658 S12: 0.0573 S13: 0.0067 REMARK 3 S21: 0.1311 S22: -0.0898 S23: -0.0296 REMARK 3 S31: -0.2380 S32: -0.0288 S33: -0.1422 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 205:250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0394 -22.1207 -6.3902 REMARK 3 T TENSOR REMARK 3 T11: 0.3534 T22: 0.3416 REMARK 3 T33: 0.3353 T12: 0.0057 REMARK 3 T13: -0.0536 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 5.3525 L22: 1.9187 REMARK 3 L33: 4.0161 L12: -0.0291 REMARK 3 L13: -2.0464 L23: 1.1699 REMARK 3 S TENSOR REMARK 3 S11: 0.1874 S12: 0.4080 S13: 0.0526 REMARK 3 S21: -0.0843 S22: 0.0024 S23: 0.2058 REMARK 3 S31: 0.0941 S32: -0.4717 S33: -0.1598 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 251:290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7485 -30.3863 -4.6141 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.2810 REMARK 3 T33: 0.3355 T12: -0.0293 REMARK 3 T13: -0.0117 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.5748 L22: 2.6716 REMARK 3 L33: 5.5431 L12: 0.2954 REMARK 3 L13: 0.1018 L23: 0.0390 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.0432 S13: -0.3213 REMARK 3 S21: 0.1632 S22: -0.0531 S23: -0.1457 REMARK 3 S31: 0.3145 S32: 0.0242 S33: 0.1098 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 291:305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.9670 -18.2591 -0.9593 REMARK 3 T TENSOR REMARK 3 T11: 0.3515 T22: 0.5077 REMARK 3 T33: 0.4999 T12: -0.0452 REMARK 3 T13: -0.0283 T23: -0.0883 REMARK 3 L TENSOR REMARK 3 L11: 7.3304 L22: 6.1343 REMARK 3 L33: 7.1484 L12: -1.0644 REMARK 3 L13: 0.6374 L23: 0.3138 REMARK 3 S TENSOR REMARK 3 S11: -0.2041 S12: 0.1457 S13: 0.3449 REMARK 3 S21: 0.4229 S22: 0.5696 S23: -0.9546 REMARK 3 S31: -0.3579 S32: 0.7888 S33: -0.3998 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15344 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.93100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, 0.2M LISO4, 0.1M TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.45400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.72700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.09050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.36350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.81750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 SER A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 PRO A 309 REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 LYS A 313 REMARK 465 LYS A 314 REMARK 465 LEU A 315 REMARK 465 ALA A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 LEU A 319 REMARK 465 GLU A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 93 OG SER A 97 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 125 C - N - CD ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 19.61 -142.34 REMARK 500 SER A 98 -144.47 -141.17 REMARK 500 GLU A 124 118.57 -161.26 REMARK 500 ASP A 167 47.12 -153.57 REMARK 500 ASP A 186 88.72 60.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L20 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DHJ RELATED DB: PDB REMARK 900 RELATED ID: 5DIA RELATED DB: PDB DBREF 5DGZ A 29 313 UNP P11309 PIM1_HUMAN 120 404 SEQADV 5DGZ MET A 28 UNP P11309 INITIATING METHIONINE SEQADV 5DGZ LYS A 314 UNP P11309 EXPRESSION TAG SEQADV 5DGZ LEU A 315 UNP P11309 EXPRESSION TAG SEQADV 5DGZ ALA A 316 UNP P11309 EXPRESSION TAG SEQADV 5DGZ ALA A 317 UNP P11309 EXPRESSION TAG SEQADV 5DGZ ALA A 318 UNP P11309 EXPRESSION TAG SEQADV 5DGZ LEU A 319 UNP P11309 EXPRESSION TAG SEQADV 5DGZ GLU A 320 UNP P11309 EXPRESSION TAG SEQADV 5DGZ HIS A 321 UNP P11309 EXPRESSION TAG SEQADV 5DGZ HIS A 322 UNP P11309 EXPRESSION TAG SEQADV 5DGZ HIS A 323 UNP P11309 EXPRESSION TAG SEQADV 5DGZ HIS A 324 UNP P11309 EXPRESSION TAG SEQADV 5DGZ HIS A 325 UNP P11309 EXPRESSION TAG SEQADV 5DGZ HIS A 326 UNP P11309 EXPRESSION TAG SEQRES 1 A 299 MET LYS GLU LYS GLU PRO LEU GLU SER GLN TYR GLN VAL SEQRES 2 A 299 GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER VAL TYR SEQRES 3 A 299 SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA ILE SEQRES 4 A 299 LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY GLU SEQRES 5 A 299 LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL LEU SEQRES 6 A 299 LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE ARG SEQRES 7 A 299 LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL LEU SEQRES 8 A 299 ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE ASP SEQRES 9 A 299 PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU ALA SEQRES 10 A 299 ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG HIS SEQRES 11 A 299 CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE LYS ASP SEQRES 12 A 299 GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU LYS SEQRES 13 A 299 LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP THR SEQRES 14 A 299 VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO SEQRES 15 A 299 PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG SER SEQRES 16 A 299 ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET SEQRES 17 A 299 VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU ILE SEQRES 18 A 299 ILE ARG GLY GLN VAL PHE PHE ARG GLN ARG VAL SER SER SEQRES 19 A 299 GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU ARG SEQRES 20 A 299 PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN HIS SEQRES 21 A 299 PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR ALA SEQRES 22 A 299 GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SER LYS SEQRES 23 A 299 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET L20 A 401 30 HET PO4 A 402 5 HET PO4 A 403 5 HETNAM L20 (2S)-1-(1H-INDOL-3-YL)-3-{[5-(3-METHYL-1H-INDAZOL-5- HETNAM 2 L20 YL)PYRIDIN-3-YL]OXY}PROPAN-2-AMINE HETNAM PO4 PHOSPHATE ION FORMUL 2 L20 C24 H23 N5 O FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *87(H2 O) HELIX 1 AA1 ASP A 72 ILE A 74 5 3 HELIX 2 AA2 MET A 88 SER A 97 1 10 HELIX 3 AA3 LEU A 129 GLY A 137 1 9 HELIX 4 AA4 GLN A 140 CYS A 161 1 22 HELIX 5 AA5 LYS A 169 GLU A 171 5 3 HELIX 6 AA6 THR A 204 SER A 208 5 5 HELIX 7 AA7 PRO A 209 HIS A 216 1 8 HELIX 8 AA8 HIS A 219 GLY A 238 1 20 HELIX 9 AA9 HIS A 244 GLY A 251 1 8 HELIX 10 AB1 SER A 260 LEU A 271 1 12 HELIX 11 AB2 ARG A 274 ARG A 278 5 5 HELIX 12 AB3 THR A 280 ASN A 286 1 7 HELIX 13 AB4 HIS A 287 GLN A 291 5 5 HELIX 14 AB5 LEU A 295 LEU A 304 1 10 SHEET 1 AA1 5 TYR A 38 GLY A 47 0 SHEET 2 AA1 5 GLY A 50 ARG A 57 -1 O SER A 54 N PRO A 42 SHEET 3 AA1 5 PRO A 63 GLU A 70 -1 O HIS A 68 N SER A 51 SHEET 4 AA1 5 SER A 115 GLU A 121 -1 O LEU A 118 N LYS A 67 SHEET 5 AA1 5 LEU A 106 GLU A 111 -1 N ASP A 108 O ILE A 119 SHEET 1 AA2 2 TRP A 77 GLU A 79 0 SHEET 2 AA2 2 ARG A 85 PRO A 87 -1 O VAL A 86 N GLY A 78 SHEET 1 AA3 3 VAL A 126 ASP A 128 0 SHEET 2 AA3 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 AA3 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176 SHEET 1 AA4 2 VAL A 163 LEU A 164 0 SHEET 2 AA4 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 CISPEP 1 GLU A 124 PRO A 125 0 -0.50 SITE 1 AC1 12 LEU A 44 GLY A 45 PHE A 49 ALA A 65 SITE 2 AC1 12 LYS A 67 GLU A 121 GLU A 171 ASN A 172 SITE 3 AC1 12 LEU A 174 ILE A 185 ASP A 186 HOH A 503 SITE 1 AC2 4 ARG A 156 ARG A 258 SER A 261 PHE A 281 SITE 1 AC3 2 GLU A 142 ARG A 145 CRYST1 98.396 98.396 80.181 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010163 0.005868 0.000000 0.00000 SCALE2 0.000000 0.011735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012472 0.00000