HEADER IMMUNE SYSTEM 31-AUG-15 5DHV TITLE HIV-1 REV NTD DIMERS WITH VARIABLE CROSSING ANGLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-REV ANTIBODY FAB SINGLE-CHAIN VARIABLE FRAGMENT, HEAVY COMPND 3 CHAIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTI-REV ANTIBODY FAB SINGLE-CHAIN VARIABLE FRAGMENT, LIGHT COMPND 8 CHAIN; COMPND 9 CHAIN: B, L; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ANTI-REV ANTIBODY FAB SINGLE-CHAIN VARIABLE FRAGMENT, HEAVY COMPND 13 CHAIN; COMPND 14 CHAIN: H; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: PROTEIN REV; COMPND 18 CHAIN: M, N; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 9 ORGANISM_COMMON: RABBIT; SOURCE 10 ORGANISM_TAXID: 9986; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 15 ORGANISM_COMMON: RABBIT; SOURCE 16 ORGANISM_TAXID: 9986; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 21 ORGANISM_COMMON: HIV-1; SOURCE 22 ORGANISM_TAXID: 11676; SOURCE 23 GENE: REV; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV, HELICAL HAIRPIN, RNA-BINDING, NUCLEAR EXPORT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.A.DIMATTIA,N.R.WATTS,P.T.WINGFIELD,J.M.GRIMES,D.I.STUART,A.C.STEVEN REVDAT 4 30-AUG-17 5DHV 1 REMARK REVDAT 3 02-AUG-17 5DHV 1 REVDAT 2 20-JUL-16 5DHV 1 JRNL REVDAT 1 22-JUN-16 5DHV 0 JRNL AUTH M.A.DIMATTIA,N.R.WATTS,N.CHENG,R.HUANG,J.B.HEYMANN, JRNL AUTH 2 J.M.GRIMES,P.T.WINGFIELD,D.I.STUART,A.C.STEVEN JRNL TITL THE STRUCTURE OF HIV-1 REV FILAMENTS SUGGESTS A BILATERAL JRNL TITL 2 MODEL FOR REV-RRE ASSEMBLY. JRNL REF STRUCTURE V. 24 1068 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27265851 JRNL DOI 10.1016/J.STR.2016.04.015 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1542 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2964 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2271 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2842 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE : 0.2793 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.12 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 122 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4474 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.72640 REMARK 3 B22 (A**2) : 4.04910 REMARK 3 B33 (A**2) : 3.67730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.43380 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.353 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4588 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6244 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1518 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 87 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 677 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4588 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 608 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5005 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.42 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.03 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { N|8 - N|65 } REMARK 3 ORIGIN FOR THE GROUP (A): 26.9295 34.5970 19.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: -0.4645 REMARK 3 T33: -0.2653 T12: -0.0941 REMARK 3 T13: -0.2719 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 3.5852 L22: 3.6224 REMARK 3 L33: 5.2378 L12: 0.2511 REMARK 3 L13: -1.8941 L23: -2.8021 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: -0.0479 S13: 0.3328 REMARK 3 S21: 0.8175 S22: -0.5690 S23: -0.5907 REMARK 3 S31: -0.6671 S32: 0.4533 S33: 0.4900 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|1 - A|123 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.9556 9.9917 8.3000 REMARK 3 T TENSOR REMARK 3 T11: -0.0025 T22: -0.5211 REMARK 3 T33: -0.4734 T12: -0.0360 REMARK 3 T13: -0.1388 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4381 L22: 6.1739 REMARK 3 L33: 3.4160 L12: -0.1762 REMARK 3 L13: 0.6135 L23: 3.1582 REMARK 3 S TENSOR REMARK 3 S11: 0.1590 S12: -0.1160 S13: 0.0170 REMARK 3 S21: 0.4855 S22: -0.2794 S23: 0.0992 REMARK 3 S31: 0.5581 S32: -0.0677 S33: 0.1204 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|1 - B|110 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.1500 24.9418 -1.4405 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: -0.4399 REMARK 3 T33: -0.0745 T12: 0.1184 REMARK 3 T13: -0.4459 T23: -0.1971 REMARK 3 L TENSOR REMARK 3 L11: 1.5034 L22: 4.9914 REMARK 3 L33: 3.6529 L12: 0.6143 REMARK 3 L13: 1.1924 L23: 0.8485 REMARK 3 S TENSOR REMARK 3 S11: -0.1006 S12: -0.0870 S13: 0.3265 REMARK 3 S21: -0.9216 S22: -0.3808 S23: 1.4724 REMARK 3 S31: -0.3575 S32: -0.7143 S33: 0.4815 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { H|1 - H|115 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.2259 -4.3437 41.1392 REMARK 3 T TENSOR REMARK 3 T11: -0.2013 T22: -0.4552 REMARK 3 T33: -0.4500 T12: -0.0317 REMARK 3 T13: -0.1331 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 1.0579 L22: 5.1221 REMARK 3 L33: 3.5530 L12: -0.7013 REMARK 3 L13: 1.0773 L23: -0.3643 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: 0.3306 S13: -0.1247 REMARK 3 S21: -0.6594 S22: 0.0411 S23: 0.0170 REMARK 3 S31: 0.1888 S32: 0.2157 S33: -0.0853 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { L|1 - L|110 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.7192 11.3011 48.0696 REMARK 3 T TENSOR REMARK 3 T11: -0.3374 T22: -0.4663 REMARK 3 T33: -0.3471 T12: -0.0161 REMARK 3 T13: -0.0795 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 1.5233 L22: 5.2486 REMARK 3 L33: 2.4407 L12: -0.1743 REMARK 3 L13: 1.1525 L23: -0.3035 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: 0.0115 S13: 0.0586 REMARK 3 S21: -0.0848 S22: 0.0983 S23: 0.7919 REMARK 3 S31: -0.0954 S32: -0.2565 S33: -0.0456 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { M|5 - M|65 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.2874 -0.6774 66.6413 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: -0.3545 REMARK 3 T33: -0.3071 T12: 0.0510 REMARK 3 T13: -0.2626 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 3.5716 L22: 8.5726 REMARK 3 L33: 4.7025 L12: 1.7140 REMARK 3 L13: 1.9618 L23: 2.2161 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: -0.1422 S13: 0.0792 REMARK 3 S21: 1.1663 S22: 0.4856 S23: -1.0006 REMARK 3 S31: 0.0261 S32: 0.6013 S33: -0.3807 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.84600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3X7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF SCFV-REV WERE INITIALLY REMARK 280 GROWN IN 20% PEG 3350, A VARIETY OF SALTS (200 MM SODIUM SULFATE, REMARK 280 SODIUM BROMIDE, OR AMMONIUM PHOSPHATE DIBASIC), AND PH RANGING REMARK 280 FROM 6.5-8.5., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.93450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET M 1 REMARK 465 ALA M 2 REMARK 465 GLY M 3 REMARK 465 ARG M 4 REMARK 465 MET N 1 REMARK 465 ALA N 2 REMARK 465 GLY N 3 REMARK 465 ARG N 4 REMARK 465 SER N 5 REMARK 465 GLY N 6 REMARK 465 ASP N 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG M 38 CG CD NE CZ NH1 NH2 REMARK 470 ARG N 38 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -65.51 -95.60 REMARK 500 SER A 55 -160.56 -103.69 REMARK 500 ASP A 100 0.55 93.35 REMARK 500 SER B 30 -126.41 54.25 REMARK 500 ALA B 51 -36.37 69.00 REMARK 500 VAL B 78 126.31 -39.42 REMARK 500 ALA B 84 -174.68 -174.84 REMARK 500 ARG B 98 -156.36 61.60 REMARK 500 SER H 30 -63.78 -96.05 REMARK 500 SER H 55 -160.00 -103.43 REMARK 500 SER H 83 80.69 -155.06 REMARK 500 ASP H 100 6.62 89.36 REMARK 500 SER L 30 -126.65 53.51 REMARK 500 ALA L 51 -37.58 69.12 REMARK 500 ALA L 84 -174.93 -175.51 REMARK 500 ARG L 98 -157.09 62.02 REMARK 500 ASN M 26 69.79 -118.93 REMARK 500 ASN N 26 68.48 -119.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DHX RELATED DB: PDB REMARK 900 RELATED ID: 5DHY RELATED DB: PDB REMARK 900 RELATED ID: 5DHZ RELATED DB: PDB DBREF 5DHV A 1 123 PDB 5DHV 5DHV 1 123 DBREF 5DHV B 1 110 PDB 5DHV 5DHV 1 110 DBREF 5DHV H 1 117 PDB 5DHV 5DHV 1 117 DBREF 5DHV L 1 110 PDB 5DHV 5DHV 1 110 DBREF 5DHV M 1 65 UNP Q76PP8 Q76PP8_9HIV1 1 65 DBREF 5DHV N 1 65 UNP Q76PP8 Q76PP8_9HIV1 1 65 SEQRES 1 A 123 GLN GLU GLN LEU VAL GLU SER GLY GLY ARG LEU VAL THR SEQRES 2 A 123 PRO GLY THR ALA LEU THR LEU THR CYS LYS VAL SER GLY SEQRES 3 A 123 PHE SER LEU SER GLY PHE TRP LEU ASN TRP VAL ARG GLN SEQRES 4 A 123 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY ALA ILE TYR SEQRES 5 A 123 ARG GLY SER GLY SER GLU TRP TYR ALA SER TRP ALA LYS SEQRES 6 A 123 GLY ARG PHE THR ILE SER ASP THR SER THR THR VAL THR SEQRES 7 A 123 LEU LYS LEU THR SER PRO THR THR GLU ASP THR ALA THR SEQRES 8 A 123 TYR PHE CYS ALA ALA ASP THR THR ASP ASN GLY TYR PHE SEQRES 9 A 123 THR ILE TRP GLY PRO GLY THR LEU VAL THR VAL SER SER SEQRES 10 A 123 HIS HIS HIS HIS HIS HIS SEQRES 1 B 110 GLU LEU VAL MET THR GLN THR PRO SER SER VAL SER GLU SEQRES 2 B 110 PRO VAL GLY GLY THR VAL THR ILE LYS CYS GLN ALA SER SEQRES 3 B 110 GLN SER ILE SER SER TRP LEU SER TRP TYR GLN GLN LYS SEQRES 4 B 110 PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 B 110 ASN LEU ALA SER GLY VAL PRO SER ARG PHE MET GLY SER SEQRES 6 B 110 GLY SER GLY THR GLU TYR THR LEU THR ILE SER GLY VAL SEQRES 7 B 110 GLN ARG GLU ASP ALA ALA THR TYR TYR CYS LEU GLY GLY SEQRES 8 B 110 TYR PRO ALA ALA SER TYR ARG THR ALA PHE GLY GLY GLY SEQRES 9 B 110 THR GLU LEU GLU ILE ILE SEQRES 1 H 117 GLN GLU GLN LEU VAL GLU SER GLY GLY ARG LEU VAL THR SEQRES 2 H 117 PRO GLY THR ALA LEU THR LEU THR CYS LYS VAL SER GLY SEQRES 3 H 117 PHE SER LEU SER GLY PHE TRP LEU ASN TRP VAL ARG GLN SEQRES 4 H 117 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY ALA ILE TYR SEQRES 5 H 117 ARG GLY SER GLY SER GLU TRP TYR ALA SER TRP ALA LYS SEQRES 6 H 117 GLY ARG PHE THR ILE SER ASP THR SER THR THR VAL THR SEQRES 7 H 117 LEU LYS LEU THR SER PRO THR THR GLU ASP THR ALA THR SEQRES 8 H 117 TYR PHE CYS ALA ALA ASP THR THR ASP ASN GLY TYR PHE SEQRES 9 H 117 THR ILE TRP GLY PRO GLY THR LEU VAL THR VAL SER SER SEQRES 1 L 110 GLU LEU VAL MET THR GLN THR PRO SER SER VAL SER GLU SEQRES 2 L 110 PRO VAL GLY GLY THR VAL THR ILE LYS CYS GLN ALA SER SEQRES 3 L 110 GLN SER ILE SER SER TRP LEU SER TRP TYR GLN GLN LYS SEQRES 4 L 110 PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 110 ASN LEU ALA SER GLY VAL PRO SER ARG PHE MET GLY SER SEQRES 6 L 110 GLY SER GLY THR GLU TYR THR LEU THR ILE SER GLY VAL SEQRES 7 L 110 GLN ARG GLU ASP ALA ALA THR TYR TYR CYS LEU GLY GLY SEQRES 8 L 110 TYR PRO ALA ALA SER TYR ARG THR ALA PHE GLY GLY GLY SEQRES 9 L 110 THR GLU LEU GLU ILE ILE SEQRES 1 M 65 MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP LEU LEU SEQRES 2 M 65 LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SER ASN SEQRES 3 M 65 PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA ARG ARG SEQRES 4 M 65 ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG GLN ILE SEQRES 5 M 65 HIS SER ILE SER GLU ARG ILE LEU SER THR TYR LEU GLY SEQRES 1 N 65 MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP LEU LEU SEQRES 2 N 65 LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SER ASN SEQRES 3 N 65 PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA ARG ARG SEQRES 4 N 65 ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG GLN ILE SEQRES 5 N 65 HIS SER ILE SER GLU ARG ILE LEU SER THR TYR LEU GLY HET CL A 201 1 HET CL H 201 1 HETNAM CL CHLORIDE ION FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *175(H2 O) HELIX 1 AA1 THR A 85 THR A 89 5 5 HELIX 2 AA2 GLN B 79 ALA B 83 5 5 HELIX 3 AA3 THR H 85 THR H 89 5 5 HELIX 4 AA4 GLN L 79 ALA L 83 5 5 HELIX 5 AA5 GLY M 6 SER M 25 1 20 HELIX 6 AA6 ARG M 35 THR M 62 1 28 HELIX 7 AA7 ASP N 9 SER N 25 1 17 HELIX 8 AA8 ARG N 35 GLY N 65 1 31 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA1 4 THR A 76 LEU A 81 -1 O LEU A 81 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 72 -1 N SER A 71 O THR A 78 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 111 VAL A 115 1 O THR A 114 N VAL A 12 SHEET 3 AA2 6 ALA A 90 ASP A 97 -1 N TYR A 92 O THR A 111 SHEET 4 AA2 6 TRP A 33 GLN A 39 -1 N VAL A 37 O PHE A 93 SHEET 5 AA2 6 LEU A 45 TYR A 52 -1 O GLY A 49 N TRP A 36 SHEET 6 AA2 6 SER A 57 TYR A 60 -1 O TRP A 59 N ALA A 50 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 111 VAL A 115 1 O THR A 114 N VAL A 12 SHEET 3 AA3 4 ALA A 90 ASP A 97 -1 N TYR A 92 O THR A 111 SHEET 4 AA3 4 ILE A 106 TRP A 107 -1 O ILE A 106 N ALA A 96 SHEET 1 AA4 4 MET B 4 THR B 7 0 SHEET 2 AA4 4 VAL B 19 ALA B 25 -1 O LYS B 22 N THR B 7 SHEET 3 AA4 4 GLU B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA4 4 PHE B 62 SER B 67 -1 N SER B 65 O THR B 72 SHEET 1 AA5 6 SER B 10 GLU B 13 0 SHEET 2 AA5 6 THR B 105 ILE B 109 1 O GLU B 108 N VAL B 11 SHEET 3 AA5 6 ALA B 84 GLY B 91 -1 N ALA B 84 O LEU B 107 SHEET 4 AA5 6 LEU B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 AA5 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA5 6 ASN B 53 LEU B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 AA6 4 SER B 10 GLU B 13 0 SHEET 2 AA6 4 THR B 105 ILE B 109 1 O GLU B 108 N VAL B 11 SHEET 3 AA6 4 ALA B 84 GLY B 91 -1 N ALA B 84 O LEU B 107 SHEET 4 AA6 4 THR B 99 PHE B 101 -1 O ALA B 100 N GLY B 90 SHEET 1 AA7 4 GLN H 3 SER H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA7 4 THR H 76 LEU H 81 -1 O LEU H 81 N LEU H 18 SHEET 4 AA7 4 PHE H 68 ASP H 72 -1 N THR H 69 O LYS H 80 SHEET 1 AA8 6 LEU H 11 VAL H 12 0 SHEET 2 AA8 6 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA8 6 ALA H 90 ASP H 97 -1 N TYR H 92 O THR H 111 SHEET 4 AA8 6 TRP H 33 GLN H 39 -1 N VAL H 37 O PHE H 93 SHEET 5 AA8 6 LEU H 45 TYR H 52 -1 O GLY H 49 N TRP H 36 SHEET 6 AA8 6 SER H 57 TYR H 60 -1 O TRP H 59 N ALA H 50 SHEET 1 AA9 4 LEU H 11 VAL H 12 0 SHEET 2 AA9 4 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA9 4 ALA H 90 ASP H 97 -1 N TYR H 92 O THR H 111 SHEET 4 AA9 4 ILE H 106 TRP H 107 -1 O ILE H 106 N ALA H 96 SHEET 1 AB1 4 MET L 4 THR L 7 0 SHEET 2 AB1 4 VAL L 19 ALA L 25 -1 O LYS L 22 N THR L 7 SHEET 3 AB1 4 GLU L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AB1 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AB2 6 SER L 10 GLU L 13 0 SHEET 2 AB2 6 THR L 105 ILE L 109 1 O GLU L 108 N VAL L 11 SHEET 3 AB2 6 ALA L 84 GLY L 91 -1 N ALA L 84 O LEU L 107 SHEET 4 AB2 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AB2 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB2 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AB3 4 SER L 10 GLU L 13 0 SHEET 2 AB3 4 THR L 105 ILE L 109 1 O GLU L 108 N VAL L 11 SHEET 3 AB3 4 ALA L 84 GLY L 91 -1 N ALA L 84 O LEU L 107 SHEET 4 AB3 4 THR L 99 PHE L 101 -1 O ALA L 100 N GLY L 90 SSBOND 1 CYS A 22 CYS A 94 1555 1555 2.04 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 94 1555 1555 2.05 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04 CISPEP 1 THR B 7 PRO B 8 0 -4.95 CISPEP 2 THR L 7 PRO L 8 0 -5.49 SITE 1 AC1 2 SER A 62 GLU B 1 SITE 1 AC2 2 SER H 62 GLU L 1 CRYST1 43.895 81.869 98.809 90.00 101.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022782 0.000000 0.004465 0.00000 SCALE2 0.000000 0.012215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010313 0.00000