HEADER LIGASE 01-SEP-15 5DIN TITLE STRUCTURAL BASIS FOR THE INDISPENSABLE ROLE OF A UNIQUE ZINC FINGER TITLE 2 MOTIF IN LNX2 UBIQUITINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGAND OF NUMB PROTEIN X 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-147; COMPND 5 SYNONYM: NUMB-BINDING PROTEIN 2,PDZ DOMAIN-CONTAINING RING FINGER COMPND 6 PROTEIN 1; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LNX2, PDZRN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3 LIGASE, UBIQUITINATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SIVARAMAN,D.NAYAK REVDAT 4 20-MAR-24 5DIN 1 REMARK REVDAT 3 23-DEC-15 5DIN 1 JRNL REVDAT 2 21-OCT-15 5DIN 1 JRNL REVDAT 1 14-OCT-15 5DIN 0 JRNL AUTH D.NAYAK,J.SIVARAMAN JRNL TITL STRUCTURAL BASIS FOR THE INDISPENSABLE ROLE OF A UNIQUE ZINC JRNL TITL 2 FINGER MOTIF IN LNX2 UBIQUITINATION. JRNL REF ONCOTARGET V. 6 34342 2015 JRNL REFN ESSN 1949-2553 JRNL PMID 26451611 JRNL DOI 10.18632/ONCOTARGET.5326 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 25094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.920 REMARK 3 FREE R VALUE TEST SET COUNT : 3881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.2420 - 5.6363 1.00 1641 141 0.1908 0.2074 REMARK 3 2 5.6363 - 4.4830 1.00 1629 142 0.1675 0.2020 REMARK 3 3 4.4830 - 3.9190 1.00 1629 141 0.1514 0.2043 REMARK 3 4 3.9190 - 3.5619 0.99 1630 143 0.1650 0.1915 REMARK 3 5 3.5619 - 3.3073 1.00 1613 139 0.1862 0.2169 REMARK 3 6 3.3073 - 3.1127 1.00 1630 146 0.2185 0.2676 REMARK 3 7 3.1127 - 2.9571 1.00 1644 150 0.1959 0.2111 REMARK 3 8 2.9571 - 2.8286 1.00 1666 140 0.1928 0.2139 REMARK 3 9 2.8286 - 2.7198 1.00 1581 136 0.2035 0.2293 REMARK 3 10 2.7198 - 2.6261 1.00 1640 140 0.1882 0.2328 REMARK 3 11 2.6261 - 2.5441 1.00 1629 149 0.2096 0.2613 REMARK 3 12 2.5441 - 2.4714 1.00 1623 142 0.2049 0.2671 REMARK 3 13 2.4714 - 2.4064 1.00 1665 134 0.2078 0.2429 REMARK 3 14 2.4064 - 2.3477 1.00 1619 132 0.1965 0.2943 REMARK 3 15 2.3477 - 2.2944 1.00 1650 148 0.2021 0.2127 REMARK 3 16 2.2944 - 2.2456 1.00 1604 143 0.1968 0.2896 REMARK 3 17 2.2456 - 2.2007 1.00 1632 132 0.1862 0.2414 REMARK 3 18 2.2007 - 2.1592 1.00 1652 141 0.2013 0.2874 REMARK 3 19 2.1592 - 2.1207 1.00 1622 135 0.1944 0.2411 REMARK 3 20 2.1207 - 2.0848 0.99 1630 144 0.1894 0.2478 REMARK 3 21 2.0848 - 2.0512 0.99 1598 127 0.1967 0.2677 REMARK 3 22 2.0512 - 2.0196 0.99 1618 149 0.1919 0.2751 REMARK 3 23 2.0196 - 1.9899 0.97 1596 131 0.1971 0.2426 REMARK 3 24 1.9899 - 1.9619 0.97 1590 144 0.1954 0.2491 REMARK 3 25 1.9619 - 1.9354 0.96 1558 127 0.2186 0.2550 REMARK 3 26 1.9354 - 1.9103 0.94 1562 125 0.2071 0.2577 REMARK 3 27 1.9103 - 1.8864 0.94 1517 153 0.2232 0.3008 REMARK 3 28 1.8864 - 1.8637 0.88 1443 107 0.2370 0.2479 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2090 REMARK 3 ANGLE : 1.091 2825 REMARK 3 CHIRALITY : 0.073 300 REMARK 3 PLANARITY : 0.006 355 REMARK 3 DIHEDRAL : 14.467 789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25094 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.864 REMARK 200 RESOLUTION RANGE LOW (A) : 24.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 9.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES MONOHYDRATE, 12% W/V REMARK 280 POLYETHYLENE GLYCOL 20000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.69950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 ASN A 1 REMARK 465 SER A 122 REMARK 465 HIS A 123 REMARK 465 ARG A 124 REMARK 465 ARG A 125 REMARK 465 VAL A 126 REMARK 465 ALA A 127 REMARK 465 LEU A 128 REMARK 465 HIS B 123 REMARK 465 ARG B 124 REMARK 465 ARG B 125 REMARK 465 VAL B 126 REMARK 465 ALA B 127 REMARK 465 LEU B 128 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA B 121 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 399 O HOH B 382 2.08 REMARK 500 O HOH A 356 O HOH A 391 2.17 REMARK 500 O HOH A 315 O HOH A 400 2.17 REMARK 500 O HOH A 346 O HOH A 347 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 320 O HOH B 423 2656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 69 17.56 58.33 REMARK 500 ARG B 117 -44.70 -132.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 CYS A 7 SG 114.4 REMARK 620 3 HIS A 11 NE2 103.5 110.8 REMARK 620 4 HIS A 17 ND1 102.9 117.3 106.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 CYS A 34 SG 106.2 REMARK 620 3 CYS A 51 SG 100.0 114.0 REMARK 620 4 CYS A 54 SG 122.6 105.5 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 CYS A 65 SG 116.0 REMARK 620 3 ASP A 68 OD1 109.0 75.9 REMARK 620 4 ASP A 68 OD2 109.4 125.5 61.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 95 SG REMARK 620 2 CYS A 101 SG 112.0 REMARK 620 3 HIS A 113 NE2 110.2 101.4 REMARK 620 4 CYS A 118 SG 105.0 118.4 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 4 SG REMARK 620 2 CYS B 7 SG 114.0 REMARK 620 3 HIS B 11 NE2 106.8 105.8 REMARK 620 4 HIS B 17 ND1 104.2 122.2 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 31 SG REMARK 620 2 CYS B 34 SG 110.9 REMARK 620 3 CYS B 51 SG 100.3 109.8 REMARK 620 4 CYS B 54 SG 120.1 103.4 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 48 ND1 116.2 REMARK 620 3 CYS B 65 SG 106.8 112.1 REMARK 620 4 ASP B 68 OD2 105.1 93.4 123.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 95 SG REMARK 620 2 CYS B 101 SG 107.2 REMARK 620 3 HIS B 113 NE2 109.1 101.7 REMARK 620 4 CYS B 118 SG 103.9 118.2 116.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 205 DBREF 5DIN A 1 128 UNP Q8N448 LNX2_HUMAN 20 147 DBREF 5DIN B 1 128 UNP Q8N448 LNX2_HUMAN 20 147 SEQADV 5DIN GLU A -1 UNP Q8N448 EXPRESSION TAG SEQADV 5DIN PHE A 0 UNP Q8N448 EXPRESSION TAG SEQADV 5DIN GLU B -1 UNP Q8N448 EXPRESSION TAG SEQADV 5DIN PHE B 0 UNP Q8N448 EXPRESSION TAG SEQRES 1 A 130 GLU PHE ASN PRO LEU CYS PHE GLU CYS GLY GLN GLN HIS SEQRES 2 A 130 TRP THR ARG GLU ASN HIS LEU TYR ASN TYR GLN ASN GLU SEQRES 3 A 130 VAL ASP ASP ASP LEU VAL CYS HIS ILE CYS LEU GLN PRO SEQRES 4 A 130 LEU LEU GLN PRO LEU ASP THR PRO CYS GLY HIS THR PHE SEQRES 5 A 130 CYS TYR LYS CYS LEU ARG ASN PHE LEU GLN GLU LYS ASP SEQRES 6 A 130 PHE CYS PRO LEU ASP ARG LYS ARG LEU HIS PHE LYS LEU SEQRES 7 A 130 CYS LYS LYS SER SER ILE LEU VAL HIS LYS LEU LEU ASP SEQRES 8 A 130 LYS LEU LEU VAL LEU CYS PRO PHE SER SER VAL CYS LYS SEQRES 9 A 130 ASP VAL MET GLN ARG CYS ASP LEU GLU ALA HIS LEU LYS SEQRES 10 A 130 ASN ARG CYS PRO GLY ALA SER HIS ARG ARG VAL ALA LEU SEQRES 1 B 130 GLU PHE ASN PRO LEU CYS PHE GLU CYS GLY GLN GLN HIS SEQRES 2 B 130 TRP THR ARG GLU ASN HIS LEU TYR ASN TYR GLN ASN GLU SEQRES 3 B 130 VAL ASP ASP ASP LEU VAL CYS HIS ILE CYS LEU GLN PRO SEQRES 4 B 130 LEU LEU GLN PRO LEU ASP THR PRO CYS GLY HIS THR PHE SEQRES 5 B 130 CYS TYR LYS CYS LEU ARG ASN PHE LEU GLN GLU LYS ASP SEQRES 6 B 130 PHE CYS PRO LEU ASP ARG LYS ARG LEU HIS PHE LYS LEU SEQRES 7 B 130 CYS LYS LYS SER SER ILE LEU VAL HIS LYS LEU LEU ASP SEQRES 8 B 130 LYS LEU LEU VAL LEU CYS PRO PHE SER SER VAL CYS LYS SEQRES 9 B 130 ASP VAL MET GLN ARG CYS ASP LEU GLU ALA HIS LEU LYS SEQRES 10 B 130 ASN ARG CYS PRO GLY ALA SER HIS ARG ARG VAL ALA LEU HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN B 201 1 HET ZN B 202 1 HET ZN B 203 1 HET ZN B 204 1 HET MES B 205 12 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 ZN 8(ZN 2+) FORMUL 11 MES C6 H13 N O4 S FORMUL 12 HOH *243(H2 O) HELIX 1 AA1 ASP A 26 VAL A 30 5 5 HELIX 2 AA2 TYR A 52 LEU A 59 1 8 HELIX 3 AA3 HIS A 73 CYS A 77 5 5 HELIX 4 AA4 SER A 81 LYS A 90 1 10 HELIX 5 AA5 ASP A 109 ARG A 117 1 9 HELIX 6 AA6 ASP B 26 VAL B 30 5 5 HELIX 7 AA7 TYR B 52 LEU B 59 1 8 HELIX 8 AA8 HIS B 73 CYS B 77 5 5 HELIX 9 AA9 SER B 81 LYS B 90 1 10 HELIX 10 AB1 ASP B 109 ARG B 117 1 9 SHEET 1 AA1 3 ASN A 20 TYR A 21 0 SHEET 2 AA1 3 LEU A 92 LEU A 94 -1 O LEU A 94 N ASN A 20 SHEET 3 AA1 3 VAL A 104 GLN A 106 -1 O MET A 105 N VAL A 93 SHEET 1 AA2 3 THR A 49 CYS A 51 0 SHEET 2 AA2 3 PRO A 41 ASP A 43 -1 N LEU A 42 O PHE A 50 SHEET 3 AA2 3 LYS A 78 LYS A 79 -1 O LYS A 78 N ASP A 43 SHEET 1 AA3 3 ASN B 20 TYR B 21 0 SHEET 2 AA3 3 LEU B 92 LEU B 94 -1 O LEU B 94 N ASN B 20 SHEET 3 AA3 3 VAL B 104 GLN B 106 -1 O MET B 105 N VAL B 93 SHEET 1 AA4 3 THR B 49 CYS B 51 0 SHEET 2 AA4 3 PRO B 41 ASP B 43 -1 N LEU B 42 O PHE B 50 SHEET 3 AA4 3 LYS B 78 LYS B 79 -1 O LYS B 78 N ASP B 43 LINK SG CYS A 4 ZN ZN A 203 1555 1555 2.28 LINK SG CYS A 7 ZN ZN A 203 1555 1555 2.27 LINK NE2 HIS A 11 ZN ZN A 203 1555 1555 2.05 LINK ND1 HIS A 17 ZN ZN A 203 1555 1555 2.03 LINK SG CYS A 31 ZN ZN A 201 1555 1555 2.38 LINK SG CYS A 34 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 46 ZN ZN A 202 1555 1555 2.19 LINK SG CYS A 51 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 54 ZN ZN A 201 1555 1555 2.27 LINK SG CYS A 65 ZN ZN A 202 1555 1555 2.27 LINK OD1 ASP A 68 ZN ZN A 202 1555 1555 2.14 LINK OD2 ASP A 68 ZN ZN A 202 1555 1555 2.08 LINK SG CYS A 95 ZN ZN A 204 1555 1555 2.35 LINK SG CYS A 101 ZN ZN A 204 1555 1555 2.29 LINK NE2 HIS A 113 ZN ZN A 204 1555 1555 2.08 LINK SG CYS A 118 ZN ZN A 204 1555 1555 2.27 LINK SG CYS B 4 ZN ZN B 202 1555 1555 2.28 LINK SG CYS B 7 ZN ZN B 202 1555 1555 2.20 LINK NE2 HIS B 11 ZN ZN B 202 1555 1555 2.06 LINK ND1 HIS B 17 ZN ZN B 202 1555 1555 2.05 LINK SG CYS B 31 ZN ZN B 203 1555 1555 2.37 LINK SG CYS B 34 ZN ZN B 203 1555 1555 2.24 LINK SG CYS B 46 ZN ZN B 204 1555 1555 2.18 LINK ND1 HIS B 48 ZN ZN B 204 1555 1555 2.06 LINK SG CYS B 51 ZN ZN B 203 1555 1555 2.32 LINK SG CYS B 54 ZN ZN B 203 1555 1555 2.27 LINK SG CYS B 65 ZN ZN B 204 1555 1555 2.18 LINK OD2 ASP B 68 ZN ZN B 204 1555 1555 2.17 LINK SG CYS B 95 ZN ZN B 201 1555 1555 2.32 LINK SG CYS B 101 ZN ZN B 201 1555 1555 2.37 LINK NE2 HIS B 113 ZN ZN B 201 1555 1555 2.04 LINK SG CYS B 118 ZN ZN B 201 1555 1555 2.27 SITE 1 AC1 4 CYS A 31 CYS A 34 CYS A 51 CYS A 54 SITE 1 AC2 4 CYS A 46 HIS A 48 CYS A 65 ASP A 68 SITE 1 AC3 4 CYS A 4 CYS A 7 HIS A 11 HIS A 17 SITE 1 AC4 4 CYS A 95 CYS A 101 HIS A 113 CYS A 118 SITE 1 AC5 4 CYS B 95 CYS B 101 HIS B 113 CYS B 118 SITE 1 AC6 4 CYS B 4 CYS B 7 HIS B 11 HIS B 17 SITE 1 AC7 4 CYS B 31 CYS B 34 CYS B 51 CYS B 54 SITE 1 AC8 4 CYS B 46 HIS B 48 CYS B 65 ASP B 68 SITE 1 AC9 8 TRP A 12 THR A 13 ARG A 14 HOH A 336 SITE 2 AC9 8 ASN B 16 ASN B 57 HOH B 338 HOH B 399 CRYST1 46.969 69.399 52.249 90.00 115.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021291 0.000000 0.010112 0.00000 SCALE2 0.000000 0.014409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021188 0.00000