HEADER HYDROLASE 01-SEP-15 5DIY TITLE THERMOBACULUM TERRENUM O-GLCNAC HYDROLASE MUTANT - D120N COMPND MOL_ID: 1; COMPND 2 MOLECULE: TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1; COMPND 3 CHAIN: P, Q; COMPND 4 FRAGMENT: UNP RESIDUES 392-398; COMPND 5 SYNONYM: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING COMPND 6 PROTEIN 1,TGF-BETA-ACTIVATED KINASE 1-BINDING PROTEIN 1,TAK1-BINDING COMPND 7 PROTEIN 1; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: HEPTAMERIC TAB1-O-GLCNAC PEPTIDE.; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: HYALURONIDASE; COMPND 12 CHAIN: A, B; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMOBACULUM TERRENUM; SOURCE 9 ORGANISM_TAXID: 166501; SOURCE 10 GENE: TTER_0116; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS GH84, OGA, O-GLCNAC HYDROLASE, O-GLCNACASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.OSTROWSKI,M.GUNDOGDU,A.T.FERENBACH,A.LEBEDEV,D.M.F.VAN AALTEN REVDAT 5 29-JUL-20 5DIY 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 30-AUG-17 5DIY 1 REMARK ATOM REVDAT 3 30-DEC-15 5DIY 1 JRNL REVDAT 2 04-NOV-15 5DIY 1 JRNL REVDAT 1 28-OCT-15 5DIY 0 JRNL AUTH A.OSTROWSKI,M.GUNDOGDU,A.T.FERENBACH,A.A.LEBEDEV, JRNL AUTH 2 D.M.VAN AALTEN JRNL TITL EVIDENCE FOR A FUNCTIONAL O-LINKED N-ACETYLGLUCOSAMINE JRNL TITL 2 (O-GLCNAC) SYSTEM IN THE THERMOPHILIC BACTERIUM JRNL TITL 3 THERMOBACULUM TERRENUM. JRNL REF J.BIOL.CHEM. V. 290 30291 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26491011 JRNL DOI 10.1074/JBC.M115.689596 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 54843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4012 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.247 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.992 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7861 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7240 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10671 ; 1.179 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16650 ; 0.908 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 929 ; 5.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 402 ;35.059 ;24.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1304 ;13.334 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;20.312 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1143 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8880 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1900 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3734 ; 1.140 ; 3.241 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3733 ; 1.140 ; 3.240 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4657 ; 1.906 ; 4.852 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4658 ; 1.906 ; 4.853 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4127 ; 1.245 ; 3.360 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4128 ; 1.245 ; 3.360 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6015 ; 2.136 ; 4.982 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9217 ; 3.580 ;25.732 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9121 ; 3.530 ;25.676 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000208805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57769 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 49.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 38% PEG-4000, 400 MM SODIUM ACETATE, REMARK 280 0.1 M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.58800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.58800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Q, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA P 6 REMARK 465 GLN P 7 REMARK 465 ALA Q 6 REMARK 465 GLN Q 7 REMARK 465 MET A 1 REMARK 465 PHE A 400 REMARK 465 PHE A 401 REMARK 465 THR A 402 REMARK 465 ALA A 403 REMARK 465 ASP A 404 REMARK 465 GLU A 405 REMARK 465 GLU A 406 REMARK 465 GLN A 407 REMARK 465 ALA A 408 REMARK 465 ARG A 409 REMARK 465 MET B 1 REMARK 465 THR B 398 REMARK 465 GLY B 399 REMARK 465 PHE B 400 REMARK 465 PHE B 401 REMARK 465 THR B 402 REMARK 465 ALA B 403 REMARK 465 ASP B 404 REMARK 465 GLU B 405 REMARK 465 GLU B 406 REMARK 465 GLN B 407 REMARK 465 ASP B 474 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 57 CE NZ REMARK 480 GLU A 58 OE1 REMARK 480 GLU A 59 CG CD OE1 OE2 REMARK 480 GLN A 60 CD OE1 NE2 REMARK 480 LYS A 65 NZ REMARK 480 GLU A 66 CG CD OE1 OE2 REMARK 480 GLU A 128 CD OE1 OE2 REMARK 480 LYS A 212 CD CE NZ REMARK 480 GLN A 281 CD OE1 NE2 REMARK 480 LEU A 449 CD2 REMARK 480 LYS B 57 CE NZ REMARK 480 GLU B 59 CG CD OE1 OE2 REMARK 480 GLU B 129 CB CG CD OE1 OE2 REMARK 480 GLU B 175 CG CD OE1 OE2 REMARK 480 PHE B 340 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG B 409 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU B 410 CD OE1 OE2 REMARK 480 LEU B 412 CG CD1 CD2 REMARK 480 GLN B 413 CG CD OE1 NE2 REMARK 480 LYS B 414 NZ REMARK 480 GLU B 463 CG CD OE1 OE2 REMARK 480 TRP B 464 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 480 TRP B 464 CZ2 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 175 NH2 ARG B 178 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 57 CD LYS A 57 CE -0.181 REMARK 500 GLU A 58 CD GLU A 58 OE1 -0.118 REMARK 500 LYS A 65 CE LYS A 65 NZ -0.249 REMARK 500 GLU A 66 CB GLU A 66 CG -0.174 REMARK 500 GLU B 410 CG GLU B 410 CD -0.108 REMARK 500 GLN B 413 CB GLN B 413 CG -0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 58 OE1 - CD - OE2 ANGL. DEV. = -8.7 DEGREES REMARK 500 LEU A 449 CB - CG - CD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 41 42.90 -156.40 REMARK 500 ARG A 49 -79.86 -132.06 REMARK 500 LEU A 51 46.25 -98.18 REMARK 500 ASN A 170 -100.25 78.15 REMARK 500 VAL A 226 129.56 -32.75 REMARK 500 SER A 278 77.39 -154.18 REMARK 500 ARG A 339 57.39 -108.78 REMARK 500 ALA B 41 45.68 -153.33 REMARK 500 ARG B 49 -78.05 -132.12 REMARK 500 LEU B 51 49.64 -99.53 REMARK 500 ASN B 170 -102.94 76.37 REMARK 500 VAL B 226 127.26 -33.72 REMARK 500 SER B 278 79.35 -158.02 REMARK 500 PRO B 321 122.77 -37.93 REMARK 500 ARG B 339 46.31 -96.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 5DIY P 1 7 UNP Q15750 TAB1_HUMAN 392 398 DBREF 5DIY Q 1 7 UNP Q15750 TAB1_HUMAN 392 398 DBREF 5DIY A 1 474 UNP D1CDN2 D1CDN2_THET1 1 474 DBREF 5DIY B 1 474 UNP D1CDN2 D1CDN2_THET1 1 474 SEQADV 5DIY ASN A 120 UNP D1CDN2 ASP 120 CONFLICT SEQADV 5DIY ASN B 120 UNP D1CDN2 ASP 120 CONFLICT SEQRES 1 P 7 VAL PRO TYR SER SER ALA GLN SEQRES 1 Q 7 VAL PRO TYR SER SER ALA GLN SEQRES 1 A 474 MET GLU TYR PHE ARG TYR ARG GLY ILE ILE GLU GLY PHE SEQRES 2 A 474 TYR GLY LYS PRO TRP GLU HIS GLN GLU ARG LEU ASP MET SEQRES 3 A 474 PHE GLU PHE MET GLN ALA ASN ASN LEU ASN ALA TYR ILE SEQRES 4 A 474 TYR ALA PRO LYS GLN ASP LEU TYR HIS ARG GLU LEU TRP SEQRES 5 A 474 ARG GLU PRO TYR LYS GLU GLU GLN LEU GLN LEU PHE LYS SEQRES 6 A 474 GLU LEU ILE GLU LYS ALA GLY SER CYS GLY ILE ASN PHE SEQRES 7 A 474 THR PHE ALA ILE SER PRO GLY LEU SER LEU VAL TYR SER SEQRES 8 A 474 SER GLU GLU GLU LEU GLU THR LEU ILE ARG LYS ILE THR SEQRES 9 A 474 PRO PHE LEU GLU MET GLY VAL HIS SER ILE GLY ILE PHE SEQRES 10 A 474 PHE ASP ASN VAL PRO PHE ASP LEU ILE HIS GLU GLU ASP SEQRES 11 A 474 ARG ASN SER TYR SER ASN LEU ALA GLU ALA GLN ALA ASP SEQRES 12 A 474 PHE LEU THR ARG VAL LEU GLN ARG LEU GLU SER THR ILE SEQRES 13 A 474 SER THR PRO GLN ILE ILE MET CYS PRO THR PHE TYR CYS SEQRES 14 A 474 ASN ASP PRO ASN LEU GLU TYR LEU ARG ILE LEU GLY GLN SEQRES 15 A 474 ARG LEU PRO LYS ASN ILE ASP VAL PHE TRP THR GLY PRO SEQRES 16 A 474 ASN VAL CYS SER HIS GLU ILE THR THR SER HIS MET GLN SEQRES 17 A 474 GLU VAL GLN LYS SER LEU GLN ARG PRO ALA THR LEU TRP SEQRES 18 A 474 ASP ASN TYR PRO VAL ASN ASP GLY GLY MET MET PRO GLU SEQRES 19 A 474 LEU HIS ILE GLY PRO TYR ASP HIS ARG ASP PRO GLU LEU SEQRES 20 A 474 HIS THR HIS VAL VAL GLY ILE TYR ALA ASN PRO MET ALA SEQRES 21 A 474 LEU PRO GLU ALA SER LYS LEU PRO LEU TYR THR PHE ALA SEQRES 22 A 474 GLN TYR LEU ASN SER PRO SER GLN TYR ASN PRO GLN ASP SEQRES 23 A 474 SER TRP ARG GLN ALA VAL SER THR LEU LEU GLY GLU ASP SEQRES 24 A 474 ASN LEU SER ALA MET GLU LYS PHE TYR GLN SER ASN THR SEQRES 25 A 474 ILE SER CYS LEU GLU PRO GLU GLU PRO ALA TYR LEU THR SEQRES 26 A 474 ASN LEU PHE LYS LYS VAL GLN GLU ASP PHE ALA SER PHE SEQRES 27 A 474 ARG PHE GLU GLN GLY LEU ARG THR LEU ARG GLU GLU ILE SEQRES 28 A 474 ILE SER MET GLN THR THR TYR SER ARG LEU SER THR GLN SEQRES 29 A 474 ASP SER LYS PHE PHE TRP GLU ILE ARG PRO TRP LEU GLU SEQRES 30 A 474 GLU TYR LYS LEU TRP THR ASP TYR LEU ASP GLN ALA MET SEQRES 31 A 474 ILE THR PHE SER ASN LEU PHE THR GLY PHE PHE THR ALA SEQRES 32 A 474 ASP GLU GLU GLN ALA ARG GLU SER LEU GLN LYS ALA LEU SEQRES 33 A 474 GLN GLY ARG THR TYR LEU ARG GLU VAL LEU LYS ASP ALA SEQRES 34 A 474 VAL ASP PHE ARG THR ARG VAL CYS GLY ASP VAL VAL ARG SEQRES 35 A 474 ASN PHE LEU GLN GLN VAL LEU ARG SER THR VAL SER ILE SEQRES 36 A 474 GLU LEU GLN ALA GLU GLY LYS GLU TRP THR ALA LEU PRO SEQRES 37 A 474 PRO GLY ILE VAL ARG ASP SEQRES 1 B 474 MET GLU TYR PHE ARG TYR ARG GLY ILE ILE GLU GLY PHE SEQRES 2 B 474 TYR GLY LYS PRO TRP GLU HIS GLN GLU ARG LEU ASP MET SEQRES 3 B 474 PHE GLU PHE MET GLN ALA ASN ASN LEU ASN ALA TYR ILE SEQRES 4 B 474 TYR ALA PRO LYS GLN ASP LEU TYR HIS ARG GLU LEU TRP SEQRES 5 B 474 ARG GLU PRO TYR LYS GLU GLU GLN LEU GLN LEU PHE LYS SEQRES 6 B 474 GLU LEU ILE GLU LYS ALA GLY SER CYS GLY ILE ASN PHE SEQRES 7 B 474 THR PHE ALA ILE SER PRO GLY LEU SER LEU VAL TYR SER SEQRES 8 B 474 SER GLU GLU GLU LEU GLU THR LEU ILE ARG LYS ILE THR SEQRES 9 B 474 PRO PHE LEU GLU MET GLY VAL HIS SER ILE GLY ILE PHE SEQRES 10 B 474 PHE ASP ASN VAL PRO PHE ASP LEU ILE HIS GLU GLU ASP SEQRES 11 B 474 ARG ASN SER TYR SER ASN LEU ALA GLU ALA GLN ALA ASP SEQRES 12 B 474 PHE LEU THR ARG VAL LEU GLN ARG LEU GLU SER THR ILE SEQRES 13 B 474 SER THR PRO GLN ILE ILE MET CYS PRO THR PHE TYR CYS SEQRES 14 B 474 ASN ASP PRO ASN LEU GLU TYR LEU ARG ILE LEU GLY GLN SEQRES 15 B 474 ARG LEU PRO LYS ASN ILE ASP VAL PHE TRP THR GLY PRO SEQRES 16 B 474 ASN VAL CYS SER HIS GLU ILE THR THR SER HIS MET GLN SEQRES 17 B 474 GLU VAL GLN LYS SER LEU GLN ARG PRO ALA THR LEU TRP SEQRES 18 B 474 ASP ASN TYR PRO VAL ASN ASP GLY GLY MET MET PRO GLU SEQRES 19 B 474 LEU HIS ILE GLY PRO TYR ASP HIS ARG ASP PRO GLU LEU SEQRES 20 B 474 HIS THR HIS VAL VAL GLY ILE TYR ALA ASN PRO MET ALA SEQRES 21 B 474 LEU PRO GLU ALA SER LYS LEU PRO LEU TYR THR PHE ALA SEQRES 22 B 474 GLN TYR LEU ASN SER PRO SER GLN TYR ASN PRO GLN ASP SEQRES 23 B 474 SER TRP ARG GLN ALA VAL SER THR LEU LEU GLY GLU ASP SEQRES 24 B 474 ASN LEU SER ALA MET GLU LYS PHE TYR GLN SER ASN THR SEQRES 25 B 474 ILE SER CYS LEU GLU PRO GLU GLU PRO ALA TYR LEU THR SEQRES 26 B 474 ASN LEU PHE LYS LYS VAL GLN GLU ASP PHE ALA SER PHE SEQRES 27 B 474 ARG PHE GLU GLN GLY LEU ARG THR LEU ARG GLU GLU ILE SEQRES 28 B 474 ILE SER MET GLN THR THR TYR SER ARG LEU SER THR GLN SEQRES 29 B 474 ASP SER LYS PHE PHE TRP GLU ILE ARG PRO TRP LEU GLU SEQRES 30 B 474 GLU TYR LYS LEU TRP THR ASP TYR LEU ASP GLN ALA MET SEQRES 31 B 474 ILE THR PHE SER ASN LEU PHE THR GLY PHE PHE THR ALA SEQRES 32 B 474 ASP GLU GLU GLN ALA ARG GLU SER LEU GLN LYS ALA LEU SEQRES 33 B 474 GLN GLY ARG THR TYR LEU ARG GLU VAL LEU LYS ASP ALA SEQRES 34 B 474 VAL ASP PHE ARG THR ARG VAL CYS GLY ASP VAL VAL ARG SEQRES 35 B 474 ASN PHE LEU GLN GLN VAL LEU ARG SER THR VAL SER ILE SEQRES 36 B 474 GLU LEU GLN ALA GLU GLY LYS GLU TRP THR ALA LEU PRO SEQRES 37 B 474 PRO GLY ILE VAL ARG ASP HET NAG P 101 14 HET NAG Q 101 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 5 NAG 2(C8 H15 N O6) FORMUL 7 HOH *297(H2 O) HELIX 1 AA1 GLU A 19 ASN A 33 1 15 HELIX 2 AA2 ASP A 45 ARG A 49 5 5 HELIX 3 AA3 LYS A 57 CYS A 74 1 18 HELIX 4 AA4 SER A 92 MET A 109 1 18 HELIX 5 AA5 HIS A 127 TYR A 134 1 8 HELIX 6 AA6 ASN A 136 SER A 154 1 19 HELIX 7 AA7 LEU A 174 LEU A 184 1 11 HELIX 8 AA8 THR A 203 GLN A 215 1 13 HELIX 9 AA9 ASP A 228 MET A 232 5 5 HELIX 10 AB1 GLU A 246 THR A 249 5 4 HELIX 11 AB2 LEU A 261 SER A 278 1 18 HELIX 12 AB3 ASN A 283 GLY A 297 1 15 HELIX 13 AB4 ASN A 300 GLN A 309 1 10 HELIX 14 AB5 PRO A 321 SER A 337 1 17 HELIX 15 AB6 ARG A 339 THR A 363 1 25 HELIX 16 AB7 SER A 366 ILE A 372 1 7 HELIX 17 AB8 ILE A 372 GLY A 399 1 28 HELIX 18 AB9 SER A 411 ALA A 429 1 19 HELIX 19 AC1 VAL A 430 PHE A 432 5 3 HELIX 20 AC2 ASP A 439 THR A 452 1 14 HELIX 21 AC3 THR A 452 GLU A 460 1 9 HELIX 22 AC4 GLU B 19 ASN B 33 1 15 HELIX 23 AC5 LYS B 57 CYS B 74 1 18 HELIX 24 AC6 SER B 92 MET B 109 1 18 HELIX 25 AC7 HIS B 127 TYR B 134 1 8 HELIX 26 AC8 ASN B 136 SER B 154 1 19 HELIX 27 AC9 LEU B 174 LEU B 184 1 11 HELIX 28 AD1 THR B 203 GLN B 215 1 13 HELIX 29 AD2 ASP B 228 MET B 232 5 5 HELIX 30 AD3 GLU B 246 THR B 249 5 4 HELIX 31 AD4 LEU B 261 SER B 278 1 18 HELIX 32 AD5 ASN B 283 GLY B 297 1 15 HELIX 33 AD6 ASN B 300 GLN B 309 1 10 HELIX 34 AD7 PRO B 321 SER B 337 1 17 HELIX 35 AD8 ARG B 339 THR B 363 1 25 HELIX 36 AD9 SER B 366 ILE B 372 1 7 HELIX 37 AE1 ILE B 372 PHE B 397 1 26 HELIX 38 AE2 ARG B 409 ALA B 429 1 21 HELIX 39 AE3 VAL B 430 PHE B 432 5 3 HELIX 40 AE4 ASP B 439 THR B 452 1 14 HELIX 41 AE5 THR B 452 GLU B 460 1 9 SHEET 1 AA1 9 TYR A 6 GLU A 11 0 SHEET 2 AA1 9 ALA A 37 TYR A 40 1 O ILE A 39 N GLU A 11 SHEET 3 AA1 9 ASN A 77 ILE A 82 1 O THR A 79 N TYR A 40 SHEET 4 AA1 9 SER A 113 PHE A 117 1 O GLY A 115 N PHE A 80 SHEET 5 AA1 9 GLN A 160 CYS A 164 1 O GLN A 160 N ILE A 114 SHEET 6 AA1 9 ASP A 189 TRP A 192 1 O ASP A 189 N MET A 163 SHEET 7 AA1 9 ALA A 218 ASP A 222 1 O THR A 219 N VAL A 190 SHEET 8 AA1 9 VAL A 251 ALA A 256 1 O TYR A 255 N LEU A 220 SHEET 9 AA1 9 TYR A 6 GLU A 11 1 N GLY A 8 O ILE A 254 SHEET 1 AA2 9 TYR B 6 GLU B 11 0 SHEET 2 AA2 9 ALA B 37 TYR B 40 1 O ILE B 39 N GLU B 11 SHEET 3 AA2 9 ASN B 77 ILE B 82 1 O THR B 79 N TYR B 38 SHEET 4 AA2 9 SER B 113 PHE B 117 1 O GLY B 115 N ILE B 82 SHEET 5 AA2 9 GLN B 160 CYS B 164 1 O GLN B 160 N ILE B 114 SHEET 6 AA2 9 ASP B 189 TRP B 192 1 O ASP B 189 N MET B 163 SHEET 7 AA2 9 ALA B 218 ASP B 222 1 O THR B 219 N VAL B 190 SHEET 8 AA2 9 VAL B 251 ALA B 256 1 O TYR B 255 N LEU B 220 SHEET 9 AA2 9 TYR B 6 GLU B 11 1 N GLY B 8 O ILE B 254 LINK OG SER P 4 C1 NAG P 101 1555 1555 1.44 LINK OG SER Q 4 C1 NAG Q 101 1555 1555 1.44 CISPEP 1 TYR A 224 PRO A 225 0 9.81 CISPEP 2 PRO A 468 PRO A 469 0 10.44 CISPEP 3 TYR B 224 PRO B 225 0 10.46 CISPEP 4 PRO B 468 PRO B 469 0 14.29 CRYST1 161.176 52.550 131.511 90.00 122.35 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006204 0.000000 0.003930 0.00000 SCALE2 0.000000 0.019029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009001 0.00000