HEADER HYDROLASE 02-SEP-15 5DJJ TITLE STRUCTURE OF M. TUBERCULOSIS CYSQ, A PAP PHOSPHATASE WITH PO4 AND 2MG TITLE 2 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3'-PHOSPHOADENOSINE 5'-PHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSQ, PAP PHOSPHATASE, 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, COMPND 5 5-BISPHOSPHONUCLEOSIDE 3'(2')-PHOSPHOHYDROLASE, D-FRUCTOSE-1,6- COMPND 6 BISPHOSPHATE 1-PHOSPHOHYDROLASE, DPNPASE, FRUCTOSE-1,6- COMPND 7 BISPHOSPHATASE, FBPASE, INOSITOL-1-MONOPHOSPHATASE,IMPASE, INOSITOL- COMPND 8 1-PHOSPHATASE; COMPND 9 EC: 3.1.3.7, 3.1.3.11, 3.1.3.25; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CYSQ, MT2189; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CYSQ, PAP PHOSPHATASE, PHOSPHATE, MAGNESIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.FISHER,A.I.ERICKSON REVDAT 4 27-SEP-23 5DJJ 1 LINK REVDAT 3 22-NOV-17 5DJJ 1 JRNL REMARK REVDAT 2 02-DEC-15 5DJJ 1 JRNL REVDAT 1 11-NOV-15 5DJJ 0 JRNL AUTH A.I.ERICKSON,R.D.SARSAM,A.J.FISHER JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS CYSQ, WITH JRNL TITL 2 SUBSTRATE AND PRODUCTS BOUND. JRNL REF BIOCHEMISTRY V. 54 6830 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26512869 JRNL DOI 10.1021/ACS.BIOCHEM.5B01000 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.230 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 38026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9334 - 4.3867 0.94 2610 135 0.1608 0.1682 REMARK 3 2 4.3867 - 3.4831 0.96 2659 136 0.1275 0.1431 REMARK 3 3 3.4831 - 3.0432 0.95 2603 139 0.1443 0.1401 REMARK 3 4 3.0432 - 2.7651 0.94 2601 169 0.1475 0.1859 REMARK 3 5 2.7651 - 2.5670 0.94 2587 158 0.1620 0.1706 REMARK 3 6 2.5670 - 2.4157 0.95 2581 150 0.1602 0.1619 REMARK 3 7 2.4157 - 2.2947 0.94 2628 135 0.1468 0.1737 REMARK 3 8 2.2947 - 2.1949 0.94 2585 154 0.1469 0.1683 REMARK 3 9 2.1949 - 2.1104 0.94 2622 136 0.1503 0.2076 REMARK 3 10 2.1104 - 2.0376 0.94 2669 114 0.1508 0.2099 REMARK 3 11 2.0376 - 1.9739 0.94 2566 140 0.1533 0.1476 REMARK 3 12 1.9739 - 1.9175 0.94 2577 146 0.1457 0.1959 REMARK 3 13 1.9175 - 1.8670 0.94 2600 144 0.1619 0.1726 REMARK 3 14 1.8670 - 1.8214 0.94 2605 122 0.1717 0.1920 REMARK 3 15 1.8214 - 1.7800 0.94 2630 163 0.1695 0.1925 REMARK 3 16 1.7800 - 1.7422 0.94 2557 129 0.1667 0.2154 REMARK 3 17 1.7422 - 1.7073 0.93 2631 102 0.1710 0.1905 REMARK 3 18 1.7073 - 1.6751 0.94 2580 131 0.1764 0.1935 REMARK 3 19 1.6751 - 1.6452 0.93 2579 165 0.1828 0.1974 REMARK 3 20 1.6452 - 1.6173 0.93 2565 148 0.1765 0.2025 REMARK 3 21 1.6173 - 1.5912 0.93 2525 155 0.1907 0.1683 REMARK 3 22 1.5912 - 1.5667 0.93 2603 125 0.1839 0.2240 REMARK 3 23 1.5667 - 1.5437 0.93 2554 129 0.2118 0.2145 REMARK 3 24 1.5437 - 1.5219 0.92 2571 133 0.2197 0.2365 REMARK 3 25 1.5219 - 1.5014 0.88 2427 128 0.2404 0.2913 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2047 REMARK 3 ANGLE : 1.332 2806 REMARK 3 CHIRALITY : 0.057 314 REMARK 3 PLANARITY : 0.007 370 REMARK 3 DIHEDRAL : 12.297 745 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -16:17) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4304 27.2434 19.2131 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.4789 REMARK 3 T33: 0.4462 T12: -0.0886 REMARK 3 T13: 0.0197 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 0.0133 L22: 0.4512 REMARK 3 L33: 0.0224 L12: 0.0796 REMARK 3 L13: -0.0124 L23: -0.0952 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: -0.2909 S13: -0.1034 REMARK 3 S21: 0.1640 S22: 0.0457 S23: 0.9680 REMARK 3 S31: 0.3449 S32: -1.0427 S33: 0.0217 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 18:123) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9506 33.1065 21.9401 REMARK 3 T TENSOR REMARK 3 T11: 0.0815 T22: 0.1168 REMARK 3 T33: 0.0963 T12: -0.0021 REMARK 3 T13: -0.0039 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.9518 L22: 2.1703 REMARK 3 L33: 0.7549 L12: 0.2077 REMARK 3 L13: 0.1793 L23: 0.1570 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.0557 S13: -0.0214 REMARK 3 S21: 0.0474 S22: 0.0396 S23: -0.1239 REMARK 3 S31: 0.0155 S32: 0.0550 S33: -0.0301 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 124:164) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0297 38.3626 4.5017 REMARK 3 T TENSOR REMARK 3 T11: 0.1463 T22: 0.1355 REMARK 3 T33: 0.1141 T12: -0.0046 REMARK 3 T13: -0.0168 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.3230 L22: 0.9377 REMARK 3 L33: 1.7247 L12: -0.0206 REMARK 3 L13: -1.0381 L23: -0.1982 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: 0.1217 S13: 0.0300 REMARK 3 S21: -0.1849 S22: 0.0101 S23: 0.0153 REMARK 3 S31: -0.1107 S32: -0.0697 S33: -0.0510 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 165:249) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2713 30.5743 2.9087 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.1461 REMARK 3 T33: 0.1408 T12: 0.0069 REMARK 3 T13: 0.0245 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.6068 L22: 0.4945 REMARK 3 L33: 1.4371 L12: 0.6470 REMARK 3 L13: -0.9756 L23: -0.8097 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: -0.0267 S13: -0.0882 REMARK 3 S21: -0.1201 S22: -0.0614 S23: -0.1037 REMARK 3 S31: 0.1110 S32: 0.1425 S33: 0.0953 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 250:267) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1639 28.1523 -9.2521 REMARK 3 T TENSOR REMARK 3 T11: 0.3944 T22: 0.1835 REMARK 3 T33: 0.1441 T12: -0.0397 REMARK 3 T13: 0.0844 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.8441 L22: 3.0549 REMARK 3 L33: 4.9835 L12: 0.4124 REMARK 3 L13: -2.4372 L23: 1.9919 REMARK 3 S TENSOR REMARK 3 S11: -0.1960 S12: 0.2781 S13: -0.0479 REMARK 3 S21: -0.1320 S22: 0.1531 S23: -0.0909 REMARK 3 S31: 0.4269 S32: -0.1053 S33: 0.0864 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000212576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12709 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL, ASYMMETRIC CUT REMARK 200 4.9650 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012, XDS REMARK 200 NOVEMBER 11, 2013 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 32.925 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.530 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.42 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5DJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 35% PEG550 REMARK 280 MME, 0.1 M BIS-TRIS-HCL, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.02500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.82150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.91600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.82150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.02500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.91600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 ASP A 11 REMARK 465 SER A 117 REMARK 465 SER A 118 REMARK 465 ASN A 119 REMARK 465 GLY A 120 REMARK 465 GLN A 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 622 O HOH A 632 1.81 REMARK 500 O ARG A 116 O HOH A 401 1.88 REMARK 500 O PRO A 245 O HOH A 402 1.91 REMARK 500 O HOH A 496 O HOH A 620 1.92 REMARK 500 O HOH A 534 O HOH A 557 1.98 REMARK 500 OG1 THR A 156 O HOH A 403 2.08 REMARK 500 O HOH A 498 O HOH A 598 2.09 REMARK 500 O HOH A 588 O HOH A 607 2.17 REMARK 500 O HOH A 637 O HOH A 641 2.19 REMARK 500 O GLY A 185 NZ LYS A 190 2.19 REMARK 500 OE1 GLU A 47 O HOH A 404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 586 O HOH A 630 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 162 110.68 -166.82 REMARK 500 SER A 186 148.10 41.01 REMARK 500 PRO A 242 46.86 -83.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD1 REMARK 620 2 LYS A 83 O 65.1 REMARK 620 3 HOH A 411 O 52.8 104.4 REMARK 620 4 HOH A 515 O 122.8 153.2 71.7 REMARK 620 5 HOH A 551 O 150.5 89.4 127.1 73.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE1 REMARK 620 2 ASP A 91 OD1 89.5 REMARK 620 3 LEU A 93 O 170.5 86.2 REMARK 620 4 PO4 A 304 O3 94.7 97.0 94.2 REMARK 620 5 PO4 A 304 O4 97.3 168.0 88.4 72.7 REMARK 620 6 HOH A 440 O 86.9 96.4 85.2 166.6 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 91 OD2 REMARK 620 2 ASP A 94 OD1 89.6 REMARK 620 3 ASP A 212 OD1 95.8 96.3 REMARK 620 4 PO4 A 304 O3 88.6 108.4 155.0 REMARK 620 5 HOH A 421 O 106.3 161.2 72.7 82.4 REMARK 620 6 HOH A 464 O 172.1 83.6 81.0 97.4 79.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DJF RELATED DB: PDB REMARK 900 RELATED ID: 5DJI RELATED DB: PDB REMARK 900 RELATED ID: 5DJH RELATED DB: PDB REMARK 900 RELATED ID: 5DJG RELATED DB: PDB REMARK 900 RELATED ID: 5DJK RELATED DB: PDB DBREF 5DJJ A 2 267 UNP P9WKJ0 CYSQ_MYCTO 2 267 SEQADV 5DJJ MET A -21 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ GLY A -20 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ SER A -19 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ SER A -18 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ HIS A -17 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ HIS A -16 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ HIS A -15 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ HIS A -14 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ HIS A -13 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ HIS A -12 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ SER A -11 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ SER A -9 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ GLY A -8 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ LEU A -7 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ VAL A -6 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ PRO A -5 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ ARG A -4 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ GLY A -3 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ SER A -2 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ HIS A -1 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ MET A 0 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJJ VAL A 1 UNP P9WKJ0 EXPRESSION TAG SEQRES 1 A 288 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 288 LEU VAL PRO ARG GLY SER HIS MET VAL VAL SER PRO ALA SEQRES 3 A 288 ALA PRO ASP LEU THR ASP ASP LEU THR ASP ALA GLU LEU SEQRES 4 A 288 ALA ALA ASP LEU ALA ALA ASP ALA GLY LYS LEU LEU LEU SEQRES 5 A 288 GLN VAL ARG ALA GLU ILE GLY PHE ASP GLN PRO TRP THR SEQRES 6 A 288 LEU GLY GLU ALA GLY ASP ARG GLN ALA ASN SER LEU LEU SEQRES 7 A 288 LEU ARG ARG LEU GLN ALA GLU ARG PRO GLY ASP ALA VAL SEQRES 8 A 288 LEU SER GLU GLU ALA HIS ASP ASP LEU ALA ARG LEU LYS SEQRES 9 A 288 SER ASP ARG VAL TRP ILE ILE ASP PRO LEU ASP GLY THR SEQRES 10 A 288 ARG GLU PHE SER THR PRO GLY ARG ASP ASP TRP ALA VAL SEQRES 11 A 288 HIS ILE ALA LEU TRP ARG ARG SER SER ASN GLY GLN PRO SEQRES 12 A 288 GLU ILE THR ASP ALA ALA VAL ALA LEU PRO ALA ARG GLY SEQRES 13 A 288 ASN VAL VAL TYR ARG THR ASP THR VAL THR SER GLY ALA SEQRES 14 A 288 ALA PRO ALA GLY VAL PRO GLY THR LEU ARG ILE ALA VAL SEQRES 15 A 288 SER ALA THR ARG PRO PRO ALA VAL LEU HIS ARG ILE ARG SEQRES 16 A 288 GLN THR LEU ALA ILE GLN PRO VAL SER ILE GLY SER ALA SEQRES 17 A 288 GLY ALA LYS ALA MET ALA VAL ILE ASP GLY TYR VAL ASP SEQRES 18 A 288 ALA TYR LEU HIS ALA GLY GLY GLN TRP GLU TRP ASP SER SEQRES 19 A 288 ALA ALA PRO ALA GLY VAL MET LEU ALA ALA GLY MET HIS SEQRES 20 A 288 ALA SER ARG LEU ASP GLY SER PRO LEU ARG TYR ASN GLN SEQRES 21 A 288 LEU ASP PRO TYR LEU PRO ASP LEU LEU MET CYS ARG ALA SEQRES 22 A 288 GLU VAL ALA PRO ILE LEU LEU GLY ALA ILE ALA ASP ALA SEQRES 23 A 288 TRP ARG HET MG A 301 1 HET MG A 302 1 HET NA A 303 1 HET PO4 A 304 5 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 MG 2(MG 2+) FORMUL 4 NA NA 1+ FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *241(H2 O) HELIX 1 AA1 THR A 14 GLY A 38 1 25 HELIX 2 AA2 GLN A 41 ARG A 65 1 25 HELIX 3 AA3 LEU A 79 SER A 84 5 6 HELIX 4 AA4 GLY A 95 SER A 100 1 6 HELIX 5 AA5 PRO A 167 LEU A 177 1 11 HELIX 6 AA6 SER A 186 ASP A 196 1 11 HELIX 7 AA7 GLU A 210 ALA A 223 1 14 HELIX 8 AA8 VAL A 254 TRP A 266 1 13 SHEET 1 AA1 5 ALA A 69 SER A 72 0 SHEET 2 AA1 5 ARG A 86 ASP A 94 1 O TRP A 88 N LEU A 71 SHEET 3 AA1 5 ALA A 108 ARG A 115 -1 O ALA A 108 N ASP A 94 SHEET 4 AA1 5 GLU A 123 LEU A 131 -1 O ASP A 126 N LEU A 113 SHEET 5 AA1 5 VAL A 137 ARG A 140 -1 O TYR A 139 N VAL A 129 SHEET 1 AA2 5 ILE A 179 SER A 183 0 SHEET 2 AA2 5 LEU A 157 VAL A 161 1 N ILE A 159 O VAL A 182 SHEET 3 AA2 5 ALA A 201 TRP A 209 1 O ALA A 201 N ALA A 160 SHEET 4 AA2 5 TYR A 243 CYS A 250 -1 O LEU A 244 N GLN A 208 SHEET 5 AA2 5 HIS A 226 SER A 228 -1 N SER A 228 O LEU A 248 LINK OD1 ASP A 25 NA NA A 303 1555 1555 3.06 LINK OE1 GLU A 73 MG MG A 301 1555 1555 1.99 LINK O LYS A 83 NA NA A 303 1555 3545 2.71 LINK OD1 ASP A 91 MG MG A 301 1555 1555 2.07 LINK OD2 ASP A 91 MG MG A 302 1555 1555 2.09 LINK O LEU A 93 MG MG A 301 1555 1555 2.04 LINK OD1 ASP A 94 MG MG A 302 1555 1555 2.14 LINK OD1 ASP A 212 MG MG A 302 1555 1555 2.00 LINK MG MG A 301 O3 PO4 A 304 1555 1555 2.14 LINK MG MG A 301 O4 PO4 A 304 1555 1555 2.13 LINK MG MG A 301 O HOH A 440 1555 1555 2.10 LINK MG MG A 302 O3 PO4 A 304 1555 1555 1.96 LINK MG MG A 302 O HOH A 421 1555 1555 2.39 LINK MG MG A 302 O HOH A 464 1555 1555 2.23 LINK NA NA A 303 O HOH A 411 1555 1555 2.32 LINK NA NA A 303 O HOH A 515 1555 3555 2.72 LINK NA NA A 303 O HOH A 551 1555 3555 2.17 SITE 1 AC1 5 GLU A 73 ASP A 91 LEU A 93 PO4 A 304 SITE 2 AC1 5 HOH A 440 SITE 1 AC2 6 ASP A 91 ASP A 94 ASP A 212 PO4 A 304 SITE 2 AC2 6 HOH A 421 HOH A 464 SITE 1 AC3 6 ASP A 25 LEU A 56 LYS A 83 HOH A 411 SITE 2 AC3 6 HOH A 515 HOH A 551 SITE 1 AC4 13 ASP A 50 GLU A 73 ASP A 91 LEU A 93 SITE 2 AC4 13 ASP A 94 GLY A 95 THR A 96 MG A 301 SITE 3 AC4 13 MG A 302 HOH A 421 HOH A 440 HOH A 477 SITE 4 AC4 13 HOH A 544 CRYST1 40.050 57.832 101.643 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009838 0.00000