HEADER LIGASE/LIGASE INHIBITOR 02-SEP-15 5DK4 TITLE CRYSTAL STRUCTURE ANALYSIS OF TRYPTOPHANYL-TRNA SYNTHETASE FROM TITLE 2 BACILLUS STEAROTHERMOPHILUS IN COMPLEX WITH INDOLMYCIN AND MG*ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHAN--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRYPTOPHANYL-TRNA SYNTHETASE,TRPRS; COMPND 5 EC: 6.1.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: TRPS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS AARS, INHIBITOR, LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.WILLIAMS,W.Y.YIN,C.W.CARTER JR. REVDAT 5 25-DEC-19 5DK4 1 REMARK REVDAT 4 20-SEP-17 5DK4 1 JRNL REMARK REVDAT 3 13-JAN-16 5DK4 1 JRNL REVDAT 2 25-NOV-15 5DK4 1 JRNL REVDAT 1 18-NOV-15 5DK4 0 JRNL AUTH T.L.WILLIAMS,Y.W.YIN,C.W.CARTER JRNL TITL SELECTIVE INHIBITION OF BACTERIAL TRYPTOPHANYL-TRNA JRNL TITL 2 SYNTHETASES BY INDOLMYCIN IS MECHANISM-BASED. JRNL REF J.BIOL.CHEM. V. 291 255 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26555258 JRNL DOI 10.1074/JBC.M115.690321 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.530 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 64339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.0244 - 5.3944 1.00 2708 103 0.1802 0.1589 REMARK 3 2 5.3944 - 4.2853 1.00 2664 134 0.1268 0.1343 REMARK 3 3 4.2853 - 3.7447 1.00 2637 161 0.1216 0.1322 REMARK 3 4 3.7447 - 3.4028 1.00 2627 155 0.1356 0.1277 REMARK 3 5 3.4028 - 3.1591 1.00 2633 165 0.1533 0.1788 REMARK 3 6 3.1591 - 2.9730 1.00 2679 128 0.1663 0.2377 REMARK 3 7 2.9730 - 2.8242 1.00 2637 142 0.1697 0.2106 REMARK 3 8 2.8242 - 2.7014 1.00 2672 130 0.1736 0.2154 REMARK 3 9 2.7014 - 2.5974 1.00 2647 151 0.1675 0.2041 REMARK 3 10 2.5974 - 2.5078 1.00 2623 169 0.1664 0.2216 REMARK 3 11 2.5078 - 2.4294 1.00 2675 137 0.1627 0.1996 REMARK 3 12 2.4294 - 2.3600 1.00 2666 133 0.1701 0.2160 REMARK 3 13 2.3600 - 2.2979 1.00 2640 125 0.1749 0.1951 REMARK 3 14 2.2979 - 2.2419 1.00 2725 127 0.1809 0.2448 REMARK 3 15 2.2419 - 2.1909 1.00 2614 140 0.1944 0.2266 REMARK 3 16 2.1909 - 2.1443 1.00 2646 127 0.1974 0.2392 REMARK 3 17 2.1443 - 2.1014 1.00 2710 138 0.2119 0.2268 REMARK 3 18 2.1014 - 2.0618 1.00 2661 133 0.2237 0.2471 REMARK 3 19 2.0618 - 2.0250 1.00 2617 189 0.2292 0.2550 REMARK 3 20 2.0250 - 1.9906 1.00 2647 132 0.2593 0.2559 REMARK 3 21 1.9906 - 1.9585 1.00 2648 155 0.2681 0.3161 REMARK 3 22 1.9585 - 1.9284 1.00 2647 144 0.2799 0.2916 REMARK 3 23 1.9284 - 1.9001 1.00 2692 106 0.2902 0.3133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2744 REMARK 3 ANGLE : 0.994 3729 REMARK 3 CHIRALITY : 0.070 411 REMARK 3 PLANARITY : 0.005 474 REMARK 3 DIHEDRAL : 17.189 1062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34849 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 31.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, POTASSIUM CITRATE, MAGNESIUM REMARK 280 CHLORIDE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.52900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.02050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.02050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 164.29350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.02050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.02050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.76450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.02050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.02050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 164.29350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.02050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.02050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.76450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.52900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 219.05800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 631 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 86 HH TYR A 136 1.18 REMARK 500 O HOH A 693 O HOH A 748 2.15 REMARK 500 O HOH A 595 O HOH A 655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 48.43 -82.90 REMARK 500 ALA A 22 -68.54 -139.85 REMARK 500 GLU A 116 -95.51 59.20 REMARK 500 LEU A 168 -43.16 -135.00 REMARK 500 ARG A 182 77.51 -152.69 REMARK 500 PRO A 189 1.73 -64.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 114 LYS A 115 -147.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O3G REMARK 620 2 ATP A 401 O2B 76.6 REMARK 620 3 ATP A 401 O2A 93.6 82.1 REMARK 620 4 HOH A 525 O 166.9 90.4 84.8 REMARK 620 5 HOH A 591 O 80.1 82.4 164.2 98.1 REMARK 620 6 HOH A 589 O 91.7 167.5 103.1 101.3 91.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5BX A 404 DBREF 5DK4 A 2 328 UNP P00953 SYW_GEOSE 2 328 SEQADV 5DK4 GLY A 0 UNP P00953 EXPRESSION TAG SEQADV 5DK4 MSE A 1 UNP P00953 EXPRESSION TAG SEQADV 5DK4 LEU A 64 UNP P00953 LYS 64 CONFLICT SEQRES 1 A 329 GLY MSE LYS THR ILE PHE SER GLY ILE GLN PRO SER GLY SEQRES 2 A 329 VAL ILE THR ILE GLY ASN TYR ILE GLY ALA LEU ARG GLN SEQRES 3 A 329 PHE VAL GLU LEU GLN HIS GLU TYR ASN CYS TYR PHE CYS SEQRES 4 A 329 ILE VAL ASP GLN HIS ALA ILE THR VAL TRP GLN ASP PRO SEQRES 5 A 329 HIS GLU LEU ARG GLN ASN ILE ARG ARG LEU ALA ALA LEU SEQRES 6 A 329 TYR LEU ALA VAL GLY ILE ASP PRO THR GLN ALA THR LEU SEQRES 7 A 329 PHE ILE GLN SER GLU VAL PRO ALA HIS ALA GLN ALA ALA SEQRES 8 A 329 TRP MSE LEU GLN CYS ILE VAL TYR ILE GLY GLU LEU GLU SEQRES 9 A 329 ARG MSE THR GLN PHE LYS GLU LYS SER ALA GLY LYS GLU SEQRES 10 A 329 ALA VAL SER ALA GLY LEU LEU THR TYR PRO PRO LEU MSE SEQRES 11 A 329 ALA ALA ASP ILE LEU LEU TYR ASN THR ASP ILE VAL PRO SEQRES 12 A 329 VAL GLY GLU ASP GLN LYS GLN HIS ILE GLU LEU THR ARG SEQRES 13 A 329 ASP LEU ALA GLU ARG PHE ASN LYS ARG TYR GLY GLU LEU SEQRES 14 A 329 PHE THR ILE PRO GLU ALA ARG ILE PRO LYS VAL GLY ALA SEQRES 15 A 329 ARG ILE MSE SER LEU VAL ASP PRO THR LYS LYS MSE SER SEQRES 16 A 329 LYS SER ASP PRO ASN PRO LYS ALA TYR ILE THR LEU LEU SEQRES 17 A 329 ASP ASP ALA LYS THR ILE GLU LYS LYS ILE LYS SER ALA SEQRES 18 A 329 VAL THR ASP SER GLU GLY THR ILE ARG TYR ASP LYS GLU SEQRES 19 A 329 ALA LYS PRO GLY ILE SER ASN LEU LEU ASN ILE TYR SER SEQRES 20 A 329 THR LEU SER GLY GLN SER ILE GLU GLU LEU GLU ARG GLN SEQRES 21 A 329 TYR GLU GLY LYS GLY TYR GLY VAL PHE LYS ALA ASP LEU SEQRES 22 A 329 ALA GLN VAL VAL ILE GLU THR LEU ARG PRO ILE GLN GLU SEQRES 23 A 329 ARG TYR HIS HIS TRP MSE GLU SER GLU GLU LEU ASP ARG SEQRES 24 A 329 VAL LEU ASP GLU GLY ALA GLU LYS ALA ASN ARG VAL ALA SEQRES 25 A 329 SER GLU MSE VAL ARG LYS MSE GLU GLN ALA MSE GLY LEU SEQRES 26 A 329 GLY ARG ARG ARG MODRES 5DK4 MSE A 92 MET MODIFIED RESIDUE MODRES 5DK4 MSE A 105 MET MODIFIED RESIDUE MODRES 5DK4 MSE A 129 MET MODIFIED RESIDUE MODRES 5DK4 MSE A 184 MET MODIFIED RESIDUE MODRES 5DK4 MSE A 193 MET MODIFIED RESIDUE MODRES 5DK4 MSE A 291 MET MODIFIED RESIDUE MODRES 5DK4 MSE A 314 MET MODIFIED RESIDUE MODRES 5DK4 MSE A 318 MET MODIFIED RESIDUE MODRES 5DK4 MSE A 322 MET MODIFIED RESIDUE HET MSE A 1 17 HET MSE A 92 17 HET MSE A 105 17 HET MSE A 129 17 HET MSE A 184 17 HET MSE A 193 17 HET MSE A 291 17 HET MSE A 314 17 HET MSE A 318 17 HET MSE A 322 17 HET ATP A 401 43 HET MG A 402 1 HET GOL A 403 11 HET 5BX A 404 34 HETNAM MSE SELENOMETHIONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM 5BX (5S)-5-[(1R)-1-(1H-INDOL-3-YL)ETHYL]-2-(METHYLAMINO)-1, HETNAM 2 5BX 3-OXAZOL-4(5H)-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 5BX INDOLEMYCIN, INDOLMYCIN FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 5BX C14 H15 N3 O2 FORMUL 6 HOH *250(H2 O) HELIX 1 AA1 THR A 15 ALA A 22 1 8 HELIX 2 AA2 ALA A 22 GLN A 30 1 9 HELIX 3 AA3 VAL A 40 ILE A 45 1 6 HELIX 4 AA4 ASP A 50 VAL A 68 1 19 HELIX 5 AA5 SER A 81 VAL A 83 5 3 HELIX 6 AA6 PRO A 84 CYS A 95 1 12 HELIX 7 AA7 TYR A 98 ARG A 104 1 7 HELIX 8 AA8 MSE A 105 ALA A 113 1 9 HELIX 9 AA9 SER A 119 LEU A 135 1 17 HELIX 10 AB1 GLY A 144 ASP A 146 5 3 HELIX 11 AB2 GLN A 147 GLY A 166 1 20 HELIX 12 AB3 ASN A 199 TYR A 203 5 5 HELIX 13 AB4 ASP A 209 SER A 219 1 11 HELIX 14 AB5 LYS A 235 GLY A 250 1 16 HELIX 15 AB6 SER A 252 TYR A 260 1 9 HELIX 16 AB7 GLY A 264 GLU A 292 1 29 HELIX 17 AB8 GLU A 294 GLY A 323 1 30 SHEET 1 AA1 3 THR A 3 ILE A 8 0 SHEET 2 AA1 3 ASN A 34 ILE A 39 1 O ASN A 34 N ILE A 4 SHEET 3 AA1 3 ALA A 75 ILE A 79 1 O THR A 76 N PHE A 37 SHEET 1 AA2 2 ILE A 140 PRO A 142 0 SHEET 2 AA2 2 GLU A 173 ARG A 175 1 O GLU A 173 N VAL A 141 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C TRP A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N LEU A 93 1555 1555 1.33 LINK C ARG A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N THR A 106 1555 1555 1.33 LINK C LEU A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N ALA A 130 1555 1555 1.33 LINK C ILE A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N SER A 185 1555 1555 1.33 LINK C LYS A 192 N MSE A 193 1555 1555 1.33 LINK C MSE A 193 N SER A 194 1555 1555 1.33 LINK C TRP A 290 N MSE A 291 1555 1555 1.33 LINK C MSE A 291 N GLU A 292 1555 1555 1.33 LINK C GLU A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N VAL A 315 1555 1555 1.33 LINK C LYS A 317 N MSE A 318 1555 1555 1.33 LINK C MSE A 318 N GLU A 319 1555 1555 1.33 LINK C ALA A 321 N MSE A 322 1555 1555 1.33 LINK C MSE A 322 N GLY A 323 1555 1555 1.33 LINK O3G ATP A 401 MG MG A 402 1555 1555 2.19 LINK O2B ATP A 401 MG MG A 402 1555 1555 2.20 LINK O2A ATP A 401 MG MG A 402 1555 1555 2.15 LINK MG MG A 402 O HOH A 525 1555 1555 2.07 LINK MG MG A 402 O HOH A 591 1555 1555 2.08 LINK MG MG A 402 O HOH A 589 1555 1555 2.03 SITE 1 AC1 28 ILE A 8 GLN A 9 SER A 11 GLY A 17 SITE 2 AC1 28 ASN A 18 GLY A 21 LYS A 111 VAL A 143 SITE 3 AC1 28 GLY A 144 ASP A 146 GLY A 180 ALA A 181 SITE 4 AC1 28 ARG A 182 ILE A 183 LYS A 192 MSE A 193 SITE 5 AC1 28 SER A 194 LYS A 195 SER A 196 MG A 402 SITE 6 AC1 28 5BX A 404 HOH A 520 HOH A 525 HOH A 537 SITE 7 AC1 28 HOH A 548 HOH A 589 HOH A 591 HOH A 619 SITE 1 AC2 6 GLN A 9 ATP A 401 5BX A 404 HOH A 525 SITE 2 AC2 6 HOH A 589 HOH A 591 SITE 1 AC3 5 LYS A 218 THR A 222 TYR A 265 GLY A 266 SITE 2 AC3 5 LYS A 269 SITE 1 AC4 14 PHE A 5 SER A 6 GLY A 7 GLN A 9 SITE 2 AC4 14 HIS A 43 TYR A 125 MSE A 129 ASP A 132 SITE 3 AC4 14 VAL A 143 GLN A 147 ATP A 401 MG A 402 SITE 4 AC4 14 HOH A 525 HOH A 589 CRYST1 62.041 62.041 219.058 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016119 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004565 0.00000