HEADER HYDROLASE 03-SEP-15 5DK5 TITLE CRYSTAL STRUCTURE OF CRN-4-MES COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DEATH-RELATED NUCLEASE 4; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: CRN-4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T-2 KEYWDS DEDDH EXONUCLEASE, INHIBITOR, COMPLEX STRUCTURE, DNASE, RNASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-Y.HSIAO,H.S.YUAN REVDAT 3 08-NOV-23 5DK5 1 JRNL REMARK LINK REVDAT 2 28-SEP-16 5DK5 1 JRNL REVDAT 1 24-AUG-16 5DK5 0 JRNL AUTH K.-W.HUANG,K.-C.HSU,L.-Y.CHU,J.-M.YANG,H.S.YUAN,Y.-Y.HSIAO JRNL TITL IDENTIFICATION OF INHIBITORS FOR THE DEDDH FAMILY OF JRNL TITL 2 EXONUCLEASES AND A UNIQUE INHIBITION MECHANISM BY CRYSTAL JRNL TITL 3 STRUCTURE ANALYSIS OF CRN-4 BOUND WITH JRNL TITL 4 2-MORPHOLIN-4-YLETHANESULFONATE (MES) JRNL REF J.MED.CHEM. V. 59 8019 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27529560 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00794 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 47139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.770 REMARK 3 FREE R VALUE TEST SET COUNT : 3662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7540 - 6.2032 1.00 1851 148 0.1624 0.1842 REMARK 3 2 6.2032 - 4.9309 0.99 1747 138 0.1625 0.1780 REMARK 3 3 4.9309 - 4.3098 0.99 1718 133 0.1336 0.1581 REMARK 3 4 4.3098 - 3.9167 1.00 1720 138 0.1314 0.1858 REMARK 3 5 3.9167 - 3.6365 0.99 1681 149 0.1456 0.1772 REMARK 3 6 3.6365 - 3.4224 0.99 1691 143 0.1621 0.1990 REMARK 3 7 3.4224 - 3.2512 0.99 1685 141 0.1599 0.1945 REMARK 3 8 3.2512 - 3.1098 0.99 1686 143 0.1680 0.2173 REMARK 3 9 3.1098 - 2.9902 1.00 1671 137 0.1813 0.2200 REMARK 3 10 2.9902 - 2.8871 1.00 1666 137 0.1729 0.2262 REMARK 3 11 2.8871 - 2.7969 0.99 1660 148 0.1776 0.2269 REMARK 3 12 2.7969 - 2.7170 0.99 1671 138 0.1797 0.2176 REMARK 3 13 2.7170 - 2.6456 0.99 1660 127 0.1800 0.2393 REMARK 3 14 2.6456 - 2.5811 0.99 1654 149 0.1882 0.2437 REMARK 3 15 2.5811 - 2.5224 0.99 1653 139 0.1938 0.2477 REMARK 3 16 2.5224 - 2.4688 0.99 1625 158 0.1963 0.2366 REMARK 3 17 2.4688 - 2.4194 0.99 1644 150 0.2077 0.2441 REMARK 3 18 2.4194 - 2.3738 0.99 1640 137 0.2048 0.2656 REMARK 3 19 2.3738 - 2.3314 0.99 1644 143 0.2204 0.2461 REMARK 3 20 2.3314 - 2.2919 0.99 1651 147 0.2276 0.2482 REMARK 3 21 2.2919 - 2.2549 0.99 1656 129 0.2389 0.2595 REMARK 3 22 2.2549 - 2.2202 0.99 1631 150 0.2573 0.3032 REMARK 3 23 2.2202 - 2.1876 0.98 1641 129 0.2614 0.3035 REMARK 3 24 2.1876 - 2.1568 0.99 1661 139 0.2717 0.2868 REMARK 3 25 2.1568 - 2.1277 0.99 1643 134 0.2880 0.3204 REMARK 3 26 2.1277 - 2.1000 0.99 1627 138 0.2782 0.3137 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4964 REMARK 3 ANGLE : 0.696 6719 REMARK 3 CHIRALITY : 0.028 725 REMARK 3 PLANARITY : 0.002 864 REMARK 3 DIHEDRAL : 12.586 1838 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -12.5884 -4.7919 18.6382 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.1716 REMARK 3 T33: 0.2032 T12: -0.0404 REMARK 3 T13: -0.0013 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.7105 L22: 0.7520 REMARK 3 L33: 1.3294 L12: -0.1412 REMARK 3 L13: -0.6563 L23: 0.0380 REMARK 3 S TENSOR REMARK 3 S11: 0.0920 S12: -0.0654 S13: 0.0831 REMARK 3 S21: 0.1989 S22: -0.0240 S23: 0.0234 REMARK 3 S31: -0.1750 S32: 0.0761 S33: -0.0724 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3CG7 REMARK 200 REMARK 200 REMARK: RECTANGULAR COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES MONOHYDRATE, 20MM MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE, 15%(V/V) 2-PROPANOL, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.12950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.00100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.81200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.00100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.12950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.81200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 PRO A -7 REMARK 465 GLY A -6 REMARK 465 ILE A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 THR A -1 REMARK 465 ARG A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 TYR A 3 REMARK 465 GLN A 4 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 PRO B -7 REMARK 465 GLY B -6 REMARK 465 ILE B -5 REMARK 465 PRO B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 THR B -1 REMARK 465 ARG B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 TYR B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 118 -66.24 -97.21 REMARK 500 ARG B 118 -66.86 -99.88 REMARK 500 ARG B 177 -70.90 -102.92 REMARK 500 ASP B 180 -155.17 -149.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD2 REMARK 620 2 ASP A 184 OD2 61.3 REMARK 620 3 HOH A 405 O 53.8 79.5 REMARK 620 4 HOH A 479 O 142.8 112.5 89.3 REMARK 620 5 HOH A 566 O 93.7 154.4 90.0 90.4 REMARK 620 6 HOH A 570 O 125.8 100.2 179.6 91.1 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 210 SG REMARK 620 2 CYS A 260 SG 103.6 REMARK 620 3 CYS A 263 SG 114.4 103.5 REMARK 620 4 CYS A 270 SG 111.3 110.1 113.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 15 OD2 REMARK 620 2 HOH B 401 O 50.0 REMARK 620 3 HOH B 426 O 138.7 89.7 REMARK 620 4 HOH B 505 O 130.4 179.5 89.9 REMARK 620 5 HOH B 534 O 97.9 90.2 89.6 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 210 SG REMARK 620 2 CYS B 260 SG 118.4 REMARK 620 3 CYS B 263 SG 112.2 102.9 REMARK 620 4 CYS B 270 SG 113.5 107.5 100.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 307 DBREF 5DK5 A 1 298 UNP Q10905 CRN4_CAEEL 1 298 DBREF 5DK5 B 1 298 UNP Q10905 CRN4_CAEEL 1 298 SEQADV 5DK5 GLY A -9 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 SER A -8 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 PRO A -7 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 GLY A -6 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 ILE A -5 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 PRO A -4 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 GLY A -3 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 SER A -2 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 THR A -1 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 ARG A 0 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 GLY B -9 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 SER B -8 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 PRO B -7 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 GLY B -6 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 ILE B -5 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 PRO B -4 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 GLY B -3 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 SER B -2 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 THR B -1 UNP Q10905 EXPRESSION TAG SEQADV 5DK5 ARG B 0 UNP Q10905 EXPRESSION TAG SEQRES 1 A 308 GLY SER PRO GLY ILE PRO GLY SER THR ARG MET ALA TYR SEQRES 2 A 308 GLN HIS CYS PRO PHE ASP THR LEU LEU ILE LEU ASP PHE SEQRES 3 A 308 GLU THR THR SER ASP ALA ALA ASN GLN ASP TYR PRO CYS SEQRES 4 A 308 GLU VAL ILE GLN PHE ALA ILE VAL ALA TYR ASP VAL PRO SEQRES 5 A 308 ASN ASP LYS ILE ARG GLU ASP ILE SER PHE ASN LYS TYR SEQRES 6 A 308 VAL LYS PRO VAL LEU ASN ARG THR LEU THR LYS ASN CYS SEQRES 7 A 308 VAL ASP PHE THR GLY ILE PRO GLN ARG SER ILE ASP THR SEQRES 8 A 308 ALA ASP THR PHE ASP VAL VAL TYR GLU GLN PHE GLN GLN SEQRES 9 A 308 TRP LEU ILE THR LEU GLY LEU GLU GLU GLY LYS PHE ALA SEQRES 10 A 308 PHE VAL CYS ASP SER ARG GLN ASP LEU TRP ARG ILE ALA SEQRES 11 A 308 GLN TYR GLN MET LYS LEU SER ASN ILE GLN MET PRO ALA SEQRES 12 A 308 PHE PHE ARG GLN TYR ILE ASN LEU TYR LYS ILE PHE THR SEQRES 13 A 308 ASN GLU MET ASP ARG MET GLY PRO LYS GLU LEU SER ALA SEQRES 14 A 308 THR THR ASN ILE GLY LYS MET ASN GLU TYR TYR ASP LEU SEQRES 15 A 308 PRO THR ILE GLY ARG ALA HIS ASP ALA MET ASP ASP CYS SEQRES 16 A 308 LEU ASN ILE ALA THR ILE LEU GLN ARG MET ILE ASN MET SEQRES 17 A 308 GLY ALA LYS VAL THR VAL ASN GLU LEU LEU THR CYS CYS SEQRES 18 A 308 ALA SER TRP ARG ARG GLN PRO LEU VAL TYR ASN LYS GLU SEQRES 19 A 308 TRP ARG SER SER PHE MET ASP ALA GLY LYS ILE PHE GLU SEQRES 20 A 308 ARG VAL LEU PRO LEU VAL VAL THR THR ILE ARG ALA GLY SEQRES 21 A 308 ASP PHE ARG LEU GLU MET TYR GLY VAL CYS ARG TYR CYS SEQRES 22 A 308 ARG LYS GLY MET ASP VAL CYS GLY THR SER HIS GLN GLN SEQRES 23 A 308 THR PRO HIS ASP LEU TYR LYS ASN GLU GLU ASP PRO ILE SEQRES 24 A 308 HIS PHE ALA LYS ILE ALA GLY TYR TYR SEQRES 1 B 308 GLY SER PRO GLY ILE PRO GLY SER THR ARG MET ALA TYR SEQRES 2 B 308 GLN HIS CYS PRO PHE ASP THR LEU LEU ILE LEU ASP PHE SEQRES 3 B 308 GLU THR THR SER ASP ALA ALA ASN GLN ASP TYR PRO CYS SEQRES 4 B 308 GLU VAL ILE GLN PHE ALA ILE VAL ALA TYR ASP VAL PRO SEQRES 5 B 308 ASN ASP LYS ILE ARG GLU ASP ILE SER PHE ASN LYS TYR SEQRES 6 B 308 VAL LYS PRO VAL LEU ASN ARG THR LEU THR LYS ASN CYS SEQRES 7 B 308 VAL ASP PHE THR GLY ILE PRO GLN ARG SER ILE ASP THR SEQRES 8 B 308 ALA ASP THR PHE ASP VAL VAL TYR GLU GLN PHE GLN GLN SEQRES 9 B 308 TRP LEU ILE THR LEU GLY LEU GLU GLU GLY LYS PHE ALA SEQRES 10 B 308 PHE VAL CYS ASP SER ARG GLN ASP LEU TRP ARG ILE ALA SEQRES 11 B 308 GLN TYR GLN MET LYS LEU SER ASN ILE GLN MET PRO ALA SEQRES 12 B 308 PHE PHE ARG GLN TYR ILE ASN LEU TYR LYS ILE PHE THR SEQRES 13 B 308 ASN GLU MET ASP ARG MET GLY PRO LYS GLU LEU SER ALA SEQRES 14 B 308 THR THR ASN ILE GLY LYS MET ASN GLU TYR TYR ASP LEU SEQRES 15 B 308 PRO THR ILE GLY ARG ALA HIS ASP ALA MET ASP ASP CYS SEQRES 16 B 308 LEU ASN ILE ALA THR ILE LEU GLN ARG MET ILE ASN MET SEQRES 17 B 308 GLY ALA LYS VAL THR VAL ASN GLU LEU LEU THR CYS CYS SEQRES 18 B 308 ALA SER TRP ARG ARG GLN PRO LEU VAL TYR ASN LYS GLU SEQRES 19 B 308 TRP ARG SER SER PHE MET ASP ALA GLY LYS ILE PHE GLU SEQRES 20 B 308 ARG VAL LEU PRO LEU VAL VAL THR THR ILE ARG ALA GLY SEQRES 21 B 308 ASP PHE ARG LEU GLU MET TYR GLY VAL CYS ARG TYR CYS SEQRES 22 B 308 ARG LYS GLY MET ASP VAL CYS GLY THR SER HIS GLN GLN SEQRES 23 B 308 THR PRO HIS ASP LEU TYR LYS ASN GLU GLU ASP PRO ILE SEQRES 24 B 308 HIS PHE ALA LYS ILE ALA GLY TYR TYR HET ZN A 301 1 HET MES A 302 25 HET MG A 303 1 HET IPA A 304 12 HET IPA A 305 12 HET IPA A 306 12 HET ZN B 301 1 HET MES B 302 25 HET MG B 303 1 HET IPA B 304 12 HET IPA B 305 12 HET IPA B 306 12 HET IPA B 307 12 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM MG MAGNESIUM ION HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 5 MG 2(MG 2+) FORMUL 6 IPA 7(C3 H8 O) FORMUL 16 HOH *452(H2 O) HELIX 1 AA1 THR A 65 GLY A 73 1 9 HELIX 2 AA2 PRO A 75 THR A 81 1 7 HELIX 3 AA3 THR A 84 LEU A 99 1 16 HELIX 4 AA4 ARG A 113 ARG A 118 1 6 HELIX 5 AA5 ARG A 118 ASN A 128 1 11 HELIX 6 AA6 PRO A 132 PHE A 135 5 4 HELIX 7 AA7 LEU A 141 GLU A 148 1 8 HELIX 8 AA8 GLU A 148 GLY A 153 1 6 HELIX 9 AA9 THR A 161 TYR A 170 1 10 HELIX 10 AB1 ASP A 180 MET A 198 1 19 HELIX 11 AB2 ALA A 212 ARG A 216 5 5 HELIX 12 AB3 GLU A 224 SER A 227 5 4 HELIX 13 AB4 SER A 228 LEU A 240 1 13 HELIX 14 AB5 ARG A 253 TYR A 257 5 5 HELIX 15 AB6 PRO A 278 LYS A 283 5 6 HELIX 16 AB7 ILE A 289 GLY A 296 1 8 HELIX 17 AB8 THR B 65 GLY B 73 1 9 HELIX 18 AB9 PRO B 75 THR B 81 1 7 HELIX 19 AC1 THR B 84 GLY B 100 1 17 HELIX 20 AC2 ARG B 113 ARG B 118 1 6 HELIX 21 AC3 ARG B 118 SER B 127 1 10 HELIX 22 AC4 PRO B 132 PHE B 135 5 4 HELIX 23 AC5 LEU B 141 MET B 152 1 12 HELIX 24 AC6 THR B 161 TYR B 170 1 10 HELIX 25 AC7 ASP B 180 MET B 198 1 19 HELIX 26 AC8 ALA B 212 ARG B 216 5 5 HELIX 27 AC9 GLU B 224 SER B 227 5 4 HELIX 28 AD1 SER B 228 LEU B 240 1 13 HELIX 29 AD2 ARG B 253 TYR B 257 5 5 HELIX 30 AD3 PRO B 278 TYR B 282 5 5 HELIX 31 AD4 ILE B 289 GLY B 296 1 8 SHEET 1 AA1 7 LYS A 45 TYR A 55 0 SHEET 2 AA1 7 VAL A 31 ASP A 40 -1 N ILE A 36 O PHE A 52 SHEET 3 AA1 7 THR A 10 THR A 18 -1 N GLU A 17 O ILE A 32 SHEET 4 AA1 7 PHE A 106 CYS A 110 1 O ALA A 107 N LEU A 12 SHEET 5 AA1 7 GLN A 137 ASN A 140 1 O ILE A 139 N PHE A 108 SHEET 6 AA1 7 GLU A 206 THR A 209 -1 O GLU A 206 N TYR A 138 SHEET 7 AA1 7 VAL A 243 THR A 246 -1 O VAL A 243 N THR A 209 SHEET 1 AA2 7 LYS B 45 TYR B 55 0 SHEET 2 AA2 7 VAL B 31 ASP B 40 -1 N PHE B 34 O LYS B 54 SHEET 3 AA2 7 THR B 10 THR B 18 -1 N GLU B 17 O ILE B 32 SHEET 4 AA2 7 PHE B 106 CYS B 110 1 O VAL B 109 N LEU B 12 SHEET 5 AA2 7 GLN B 137 ASN B 140 1 O ILE B 139 N PHE B 108 SHEET 6 AA2 7 GLU B 206 THR B 209 -1 O GLU B 206 N TYR B 138 SHEET 7 AA2 7 VAL B 243 THR B 246 -1 O THR B 245 N LEU B 207 LINK OD2 ASP A 15 MG MG A 303 1555 1555 2.81 LINK OD2 ASP A 184 MG MG A 303 1555 1555 2.87 LINK SG CYS A 210 ZN ZN A 301 1555 1555 2.35 LINK SG CYS A 260 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 263 ZN ZN A 301 1555 1555 2.28 LINK SG CYS A 270 ZN ZN A 301 1555 1555 2.27 LINK MG MG A 303 O HOH A 405 1555 1555 2.18 LINK MG MG A 303 O HOH A 479 1555 1555 2.18 LINK MG MG A 303 O HOH A 566 1555 1555 2.18 LINK MG MG A 303 O HOH A 570 1555 1555 2.18 LINK OD2 ASP B 15 MG MG B 303 1555 1555 2.88 LINK SG CYS B 210 ZN ZN B 301 1555 1555 2.36 LINK SG CYS B 260 ZN ZN B 301 1555 1555 2.29 LINK SG CYS B 263 ZN ZN B 301 1555 1555 2.40 LINK SG CYS B 270 ZN ZN B 301 1555 1555 2.35 LINK MG MG B 303 O HOH B 401 1555 1555 2.18 LINK MG MG B 303 O HOH B 426 1555 1555 2.18 LINK MG MG B 303 O HOH B 505 1555 1555 2.18 LINK MG MG B 303 O HOH B 534 1555 1555 2.18 CISPEP 1 TYR B 257 GLY B 258 0 -3.21 SITE 1 AC1 4 CYS A 210 CYS A 260 CYS A 263 CYS A 270 SITE 1 AC2 8 GLU A 17 PHE A 71 THR A 72 THR A 161 SITE 2 AC2 8 HIS A 179 ASP A 180 ASP A 184 HOH A 479 SITE 1 AC3 7 ASP A 15 GLU A 17 ASP A 184 HOH A 405 SITE 2 AC3 7 HOH A 479 HOH A 566 HOH A 570 SITE 1 AC4 4 ALA A 159 THR A 160 THR A 161 HOH A 659 SITE 1 AC5 2 TRP A 214 HOH A 574 SITE 1 AC6 5 ARG A 215 GLN A 276 ASP A 280 HOH A 431 SITE 2 AC6 5 HOH A 679 SITE 1 AC7 4 CYS B 210 CYS B 260 CYS B 263 CYS B 270 SITE 1 AC8 9 GLU B 17 THR B 72 THR B 161 HIS B 179 SITE 2 AC8 9 ASP B 180 ASP B 184 HOH B 410 HOH B 426 SITE 3 AC8 9 HOH B 431 SITE 1 AC9 7 ASP B 15 GLU B 17 ASP B 184 HOH B 401 SITE 2 AC9 7 HOH B 426 HOH B 505 HOH B 534 SITE 1 AD1 4 SER B 112 ARG B 113 ASN B 140 TYR B 142 SITE 1 AD2 6 TYR B 27 ARG B 118 TYR B 122 PHE B 236 SITE 2 AD2 6 PHE B 291 HOH B 473 SITE 1 AD3 3 ARG B 215 ARG B 216 ASP B 280 SITE 1 AD4 3 ASP B 111 ASN B 162 HOH B 431 CRYST1 66.259 67.624 178.002 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005618 0.00000