data_5DK6 # _entry.id 5DK6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5DK6 WWPDB D_1000213175 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB ;VIBRIO CHOLERAE 5'-METHYLTHIOADENOSINE/S-ADENOSYL HOMOCYSTEINE NUCLEOSIDASE (MTAN) COMPLEXED WITH METHYLTHIO-DADME-IMMUCILLIN-A ; 4WKB unspecified PDB ;VIBRIO CHOLERAE 5'-METHYLTHIOADENOSINE/S-ADENOSYL HOMOCYSTEINE NUCLEOSIDASE (MTAN) COMPLEXED WITH METHYLTHIO-DADME-IMMUCILLIN-A ; 4X24 unspecified PDB ;VIBRIO CHOLERAE 5'-METHYLTHIOADENOSINE/S-ADENOSYL HOMOCYSTEINE NUCLEOSIDASE (MTAN) COMPLEXED WITH BUTYLTHIO-DADME-IMMUCILLIN A ; 3DP9 unspecified PDB 'K. pneumoniae mta/adohcy nucleosidase in complex with fragmented s-adenosyl-l-homocysteine' 4G89 unspecified PDB ;5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Bacillus anthracis ; 4QEZ unspecified TargetTrack . NYSGRC-029300 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DK6 _pdbx_database_status.recvd_initial_deposition_date 2015-09-03 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Himmel, D.M.' 1 'Bhosle, R.' 2 'Toro, R.' 3 'Ahmed, M.' 4 'Hillerich, B.' 5 'Gizzi, A.' 6 'Garforth, S.' 7 'Kar, A.' 8 'Chan, M.K.' 9 'Lafluer, J.' 10 'Patel, H.' 11 'Matikainen, B.' 12 'Chamala, S.' 13 'Lim, S.' 14 'Celikgil, A.' 15 'Villegas, G.' 16 'Evans, B.' 17 'Love, J.' 18 'Fiser, A.' 19 'Seidel, R.D.' 20 'Bonanno, J.B.' 21 'Almo, S.C.' 22 'New York Structural Genomics Research Consortium (NYSGRC)' 23 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? ? ? ? primary 'To be published' ? 0353 ? ? ? ? ? ? ? ;CRYSTAL STRUCTURE OF A 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE (MTA/SAH)NUCLEOSIDASE (MTAN) FROM COLWELLIA PSYCHRERYTHRAEA 34H (CPS_4743, TARGET PSI-029300) IN COMPLEX WITH ADENINE AT 2.27 A RESOLUTION ; ? ? ? ? ? ? ? ? ? ? ? ? US ? ? 1 Biochemistry BICHAW 0033 1520-4995 ? ? 54 ? 2520 2529 'Active site and remote contributions to catalysis in methylthioadenosine nucleosidases.' 2015 ? 10.1021/bi501487w 25806409 ? ? ? ? ? ? ? ? US ? ? 2 'Nat. Chem. Biol.' ? ? 1552-4469 ? ? 5 ? 251 257 ;Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing. ; 2009 ? 10.1038/nchembio.153 19270684 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Himmel, D.M.' 1 primary 'Bhosle, R.' 2 primary 'Toro, R.' 3 primary 'Ahmed, M.' 4 primary 'Hillerich, B.' 5 primary 'Gizzi, A.' 6 primary 'Garforth, S.' 7 primary 'Kar, A.' 8 primary 'Chan, M.K.' 9 primary 'Lafluer, J.' 10 primary 'Patel, H.' 11 primary 'Matikainen, B.' 12 primary 'Chamala, S.' 13 primary 'Lim, S.' 14 primary 'Celikgil, A.' 15 primary 'Villegas, G.' 16 primary 'Evans, B.' 17 primary 'Love, J.' 18 primary 'Fiser, A.' 19 primary 'Seidel, R.D.' 20 primary 'Bonanno, J.B.' 21 primary 'Almo, S.C.' 22 primary 'New York Structural Genomics Research Consortium (NYSGRC)' 23 1 'Thomas, K.' 24 1 'Cameron, S.A.' 25 1 'Almo, S.C.' 26 1 'Burgos, E.S.' 27 1 'Gulab, S.A.' 28 1 'Schramm, V.L.' 29 2 'Gutierrez, J.A.' 30 2 'Crowder, T.' 31 2 'Rinaldo-Matthis, A.' 32 2 'Ho, M.C.' 33 2 'Almo, S.C.' 34 2 'Schramm, V.L.' 35 # _cell.entry_id 5DK6 _cell.length_a 145.427 _cell.length_b 145.427 _cell.length_c 70.341 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DK6 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase ; 28485.967 1 3.2.2.9 ? ? ? 2 non-polymer syn GLYCINE 75.067 1 ? ? ? ? 3 non-polymer nat ADENINE 135.127 1 ? ? ? ? 4 water nat water 18.015 101 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;MTAN,5'-methylthioadenosine nucleosidase,MTA nucleosidase,S-adenosylhomocysteine nucleosidase,SRH nucleosidase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HHHHHHSSGVDLGTENLYFQS(MSE)KAGIIGA(MSE)EPEVAILKEKLTDAKSTEHAGYTFHQGQLDGSDVVIV QSGIGKVAAALATAILIDRFQVDYVVNTGSAGGFDASLKVGDIVVSSEVRYHDVDLTAFGYEIGQLPANPAAF(MSE)PH DDLVAAAKKGIEQLSQTAGENIKAVTGLITTGDTF(MSE)TKEEDVAKARANFPT(MSE)AAVE(MSE)EGAAIAQACLQ LKTPFVVIRSLSDIAGKESPHTFEEYLETAAVNSSQLVLN(MSE)LGQLKGKVLSAA ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSMKAGIIGAMEPEVAILKEKLTDAKSTEHAGYTFHQGQLDGSDVVIVQSGIGKVAAALA TAILIDRFQVDYVVNTGSAGGFDASLKVGDIVVSSEVRYHDVDLTAFGYEIGQLPANPAAFMPHDDLVAAAKKGIEQLSQ TAGENIKAVTGLITTGDTFMTKEEDVAKARANFPTMAAVEMEGAAIAQACLQLKTPFVVIRSLSDIAGKESPHTFEEYLE TAAVNSSQLVLNMLGQLKGKVLSAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-029300 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 MSE n 1 24 LYS n 1 25 ALA n 1 26 GLY n 1 27 ILE n 1 28 ILE n 1 29 GLY n 1 30 ALA n 1 31 MSE n 1 32 GLU n 1 33 PRO n 1 34 GLU n 1 35 VAL n 1 36 ALA n 1 37 ILE n 1 38 LEU n 1 39 LYS n 1 40 GLU n 1 41 LYS n 1 42 LEU n 1 43 THR n 1 44 ASP n 1 45 ALA n 1 46 LYS n 1 47 SER n 1 48 THR n 1 49 GLU n 1 50 HIS n 1 51 ALA n 1 52 GLY n 1 53 TYR n 1 54 THR n 1 55 PHE n 1 56 HIS n 1 57 GLN n 1 58 GLY n 1 59 GLN n 1 60 LEU n 1 61 ASP n 1 62 GLY n 1 63 SER n 1 64 ASP n 1 65 VAL n 1 66 VAL n 1 67 ILE n 1 68 VAL n 1 69 GLN n 1 70 SER n 1 71 GLY n 1 72 ILE n 1 73 GLY n 1 74 LYS n 1 75 VAL n 1 76 ALA n 1 77 ALA n 1 78 ALA n 1 79 LEU n 1 80 ALA n 1 81 THR n 1 82 ALA n 1 83 ILE n 1 84 LEU n 1 85 ILE n 1 86 ASP n 1 87 ARG n 1 88 PHE n 1 89 GLN n 1 90 VAL n 1 91 ASP n 1 92 TYR n 1 93 VAL n 1 94 VAL n 1 95 ASN n 1 96 THR n 1 97 GLY n 1 98 SER n 1 99 ALA n 1 100 GLY n 1 101 GLY n 1 102 PHE n 1 103 ASP n 1 104 ALA n 1 105 SER n 1 106 LEU n 1 107 LYS n 1 108 VAL n 1 109 GLY n 1 110 ASP n 1 111 ILE n 1 112 VAL n 1 113 VAL n 1 114 SER n 1 115 SER n 1 116 GLU n 1 117 VAL n 1 118 ARG n 1 119 TYR n 1 120 HIS n 1 121 ASP n 1 122 VAL n 1 123 ASP n 1 124 LEU n 1 125 THR n 1 126 ALA n 1 127 PHE n 1 128 GLY n 1 129 TYR n 1 130 GLU n 1 131 ILE n 1 132 GLY n 1 133 GLN n 1 134 LEU n 1 135 PRO n 1 136 ALA n 1 137 ASN n 1 138 PRO n 1 139 ALA n 1 140 ALA n 1 141 PHE n 1 142 MSE n 1 143 PRO n 1 144 HIS n 1 145 ASP n 1 146 ASP n 1 147 LEU n 1 148 VAL n 1 149 ALA n 1 150 ALA n 1 151 ALA n 1 152 LYS n 1 153 LYS n 1 154 GLY n 1 155 ILE n 1 156 GLU n 1 157 GLN n 1 158 LEU n 1 159 SER n 1 160 GLN n 1 161 THR n 1 162 ALA n 1 163 GLY n 1 164 GLU n 1 165 ASN n 1 166 ILE n 1 167 LYS n 1 168 ALA n 1 169 VAL n 1 170 THR n 1 171 GLY n 1 172 LEU n 1 173 ILE n 1 174 THR n 1 175 THR n 1 176 GLY n 1 177 ASP n 1 178 THR n 1 179 PHE n 1 180 MSE n 1 181 THR n 1 182 LYS n 1 183 GLU n 1 184 GLU n 1 185 ASP n 1 186 VAL n 1 187 ALA n 1 188 LYS n 1 189 ALA n 1 190 ARG n 1 191 ALA n 1 192 ASN n 1 193 PHE n 1 194 PRO n 1 195 THR n 1 196 MSE n 1 197 ALA n 1 198 ALA n 1 199 VAL n 1 200 GLU n 1 201 MSE n 1 202 GLU n 1 203 GLY n 1 204 ALA n 1 205 ALA n 1 206 ILE n 1 207 ALA n 1 208 GLN n 1 209 ALA n 1 210 CYS n 1 211 LEU n 1 212 GLN n 1 213 LEU n 1 214 LYS n 1 215 THR n 1 216 PRO n 1 217 PHE n 1 218 VAL n 1 219 VAL n 1 220 ILE n 1 221 ARG n 1 222 SER n 1 223 LEU n 1 224 SER n 1 225 ASP n 1 226 ILE n 1 227 ALA n 1 228 GLY n 1 229 LYS n 1 230 GLU n 1 231 SER n 1 232 PRO n 1 233 HIS n 1 234 THR n 1 235 PHE n 1 236 GLU n 1 237 GLU n 1 238 TYR n 1 239 LEU n 1 240 GLU n 1 241 THR n 1 242 ALA n 1 243 ALA n 1 244 VAL n 1 245 ASN n 1 246 SER n 1 247 SER n 1 248 GLN n 1 249 LEU n 1 250 VAL n 1 251 LEU n 1 252 ASN n 1 253 MSE n 1 254 LEU n 1 255 GLY n 1 256 GLN n 1 257 LEU n 1 258 LYS n 1 259 GLY n 1 260 LYS n 1 261 VAL n 1 262 LEU n 1 263 SER n 1 264 ALA n 1 265 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 265 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mtnN, CPS_4743' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain '34H / ATCC BAA-681' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Colwellia psychrerythraea' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 167879 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MTNN_COLP3 _struct_ref.pdbx_db_accession Q47UY5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKAGIIGAMEPEVAILKEKLTDAKSTEHAGYTFHQGQLDGSDVVIVQSGIGKVAAALATAILIDRFQVDYVVNTGSAGGF DASLKVGDIVVSSEVRYHDVDLTAFGYEIGQLPANPAAFMPHDDLVAAAKKGIEQLSQTAGENIKAVTGLITTGDTFMTK EEDVAKARANFPTMAAVEMEGAAIAQACLQLKTPFVVIRSLSDIAGKESPHTFEEYLETAAVNSSQLVLNMLGQLKGKVL SAA ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DK6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q47UY5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 243 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 243 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5DK6 MSE A 1 ? UNP Q47UY5 ? ? 'expression tag' -22 1 1 5DK6 HIS A 2 ? UNP Q47UY5 ? ? 'expression tag' -21 2 1 5DK6 HIS A 3 ? UNP Q47UY5 ? ? 'expression tag' -20 3 1 5DK6 HIS A 4 ? UNP Q47UY5 ? ? 'expression tag' -19 4 1 5DK6 HIS A 5 ? UNP Q47UY5 ? ? 'expression tag' -18 5 1 5DK6 HIS A 6 ? UNP Q47UY5 ? ? 'expression tag' -17 6 1 5DK6 HIS A 7 ? UNP Q47UY5 ? ? 'expression tag' -16 7 1 5DK6 SER A 8 ? UNP Q47UY5 ? ? 'expression tag' -15 8 1 5DK6 SER A 9 ? UNP Q47UY5 ? ? 'expression tag' -14 9 1 5DK6 GLY A 10 ? UNP Q47UY5 ? ? 'expression tag' -13 10 1 5DK6 VAL A 11 ? UNP Q47UY5 ? ? 'expression tag' -12 11 1 5DK6 ASP A 12 ? UNP Q47UY5 ? ? 'expression tag' -11 12 1 5DK6 LEU A 13 ? UNP Q47UY5 ? ? 'expression tag' -10 13 1 5DK6 GLY A 14 ? UNP Q47UY5 ? ? 'expression tag' -9 14 1 5DK6 THR A 15 ? UNP Q47UY5 ? ? 'expression tag' -8 15 1 5DK6 GLU A 16 ? UNP Q47UY5 ? ? 'expression tag' -7 16 1 5DK6 ASN A 17 ? UNP Q47UY5 ? ? 'expression tag' -6 17 1 5DK6 LEU A 18 ? UNP Q47UY5 ? ? 'expression tag' -5 18 1 5DK6 TYR A 19 ? UNP Q47UY5 ? ? 'expression tag' -4 19 1 5DK6 PHE A 20 ? UNP Q47UY5 ? ? 'expression tag' -3 20 1 5DK6 GLN A 21 ? UNP Q47UY5 ? ? 'expression tag' -2 21 1 5DK6 SER A 22 ? UNP Q47UY5 ? ? 'expression tag' -1 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DK6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.84 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Protein (37.95 mg/ml, 20 mM HEPES pH 7.5, 150 mM Sodium Chloride, 5% v/v Glycerol, 5 mM DTT) were combined with an equal volume of Reservoir (100 mM Bicine pH 8.0, 1.98 M Ammonium Sulfate, 135 mM Sodium Succinate, 4 mM Glycine, 15 mM CYMAL-7); Cryoprotection (75 mM Bicine pH 8.0, 1.49 M Ammonium Sulfate, 101 mM Sodium Succinate, 3 mM Glycine, 11 mM CYMAL-7) ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details MIRRORS _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-17 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97931 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 31-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5DK6 _reflns.observed_criterion_sigma_I -0.300 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 26.000 _reflns.d_resolution_high 2.268 _reflns.number_obs 37023 _reflns.number_all ? _reflns.percent_possible_obs 96.4 _reflns.pdbx_Rmerge_I_obs 0.10000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.5000 _reflns.B_iso_Wilson_estimate 33.16 _reflns.pdbx_redundancy 3.900 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.27 _reflns_shell.d_res_low 2.36 _reflns_shell.percent_possible_all 82.8 _reflns_shell.Rmerge_I_obs 0.33700 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.148 _reflns_shell.pdbx_redundancy 2.00 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5DK6 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20433 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.450 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.28 _refine.ls_d_res_high 2.27 _refine.ls_percent_reflns_obs 98.2 _refine.ls_R_factor_obs 0.210 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2082 _refine.ls_R_factor_R_free 0.2371 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 1002 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 43.60 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.34 _refine.solvent_model_param_bsol 31.60 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.230 _refine.pdbx_overall_phase_error 22.270 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1802 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 1917 _refine_hist.d_res_high 2.27 _refine_hist.d_res_low 25.28 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 1843 'X-RAY DIFFRACTION' ? f_angle_d 1.201 ? ? 2493 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.474 ? ? 657 'X-RAY DIFFRACTION' ? f_chiral_restr 0.043 ? ? 295 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 321 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.2676 2.3870 2506 0.2987 91.00 0.3245 . . 125 . . . . 'X-RAY DIFFRACTION' . 2.3870 2.5365 2768 0.2768 99.00 0.2928 . . 124 . . . . 'X-RAY DIFFRACTION' . 2.5365 2.7321 2766 0.2439 100.00 0.2738 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.7321 3.0066 2795 0.2286 99.00 0.2557 . . 125 . . . . 'X-RAY DIFFRACTION' . 3.0066 3.4408 2783 0.2061 99.00 0.2416 . . 164 . . . . 'X-RAY DIFFRACTION' . 3.4408 4.3315 2835 0.1796 100.00 0.2104 . . 149 . . . . 'X-RAY DIFFRACTION' . 4.3315 25.2798 2978 0.1790 99.00 0.2064 . . 170 . . . . # _struct.entry_id 5DK6 _struct.title ;CRYSTAL STRUCTURE OF A 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE (MTA/SAH) NUCLEOSIDASE (MTAN) FROM COLWELLIA PSYCHRERYTHRAEA 34H (CPS_4743, TARGET PSI-029300) IN COMPLEX WITH ADENINE AT 2.27 A RESOLUTION ; _struct.pdbx_descriptor ;5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (E.C.3.2.2.9) ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DK6 _struct_keywords.text ;HYDROLASE, MTA/SAH NUCLEOSIDASE FAMILY, MTAN, GAMMAPROTEOBACTERIA, Vibrio psychroerythus, ADENINE, PROTEIN-LIGAND COMPLEX, PROTEIN STRUCTURE INITIATIVE, PSI-Biology, Structural Genomics, New York Structural Genomics Research Consortium, NYSGRC ; _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 32 ? LYS A 41 ? GLU A 10 LYS A 19 1 ? 10 HELX_P HELX_P2 AA2 GLY A 73 ? GLN A 89 ? GLY A 51 GLN A 67 1 ? 17 HELX_P HELX_P3 AA3 LEU A 124 ? GLY A 128 ? LEU A 102 GLY A 106 5 ? 5 HELX_P HELX_P4 AA4 HIS A 144 ? ILE A 155 ? HIS A 122 ILE A 133 1 ? 12 HELX_P HELX_P5 AA5 LYS A 182 ? PHE A 193 ? LYS A 160 PHE A 171 1 ? 12 HELX_P HELX_P6 AA6 GLU A 202 ? LEU A 213 ? GLU A 180 LEU A 191 1 ? 12 HELX_P HELX_P7 AA7 GLU A 230 ? LEU A 257 ? GLU A 208 LEU A 235 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A SER 22 C ? ? ? 1_555 A MSE 23 N ? ? A SER -1 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 23 C ? ? ? 1_555 A LYS 24 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.324 ? covale3 covale both ? A ALA 30 C ? ? ? 1_555 A MSE 31 N ? ? A ALA 8 A MSE 9 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale both ? A MSE 31 C ? ? ? 1_555 A GLU 32 N ? ? A MSE 9 A GLU 10 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale both ? A PHE 141 C ? ? ? 1_555 A MSE 142 N ? ? A PHE 119 A MSE 120 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale both ? A MSE 142 C ? ? ? 1_555 A PRO 143 N ? ? A MSE 120 A PRO 121 1_555 ? ? ? ? ? ? ? 1.324 ? covale7 covale both ? A PHE 179 C ? ? ? 1_555 A MSE 180 N ? ? A PHE 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale both ? A MSE 180 C ? ? ? 1_555 A THR 181 N ? ? A MSE 158 A THR 159 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale both ? A THR 195 C ? ? ? 1_555 A MSE 196 N ? ? A THR 173 A MSE 174 1_555 ? ? ? ? ? ? ? 1.336 ? covale10 covale both ? A MSE 196 C ? ? ? 1_555 A ALA 197 N ? ? A MSE 174 A ALA 175 1_555 ? ? ? ? ? ? ? 1.324 ? covale11 covale both ? A GLU 200 C ? ? ? 1_555 A MSE 201 N ? ? A GLU 178 A MSE 179 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale both ? A MSE 201 C ? ? ? 1_555 A GLU 202 N ? ? A MSE 179 A GLU 180 1_555 ? ? ? ? ? ? ? 1.332 ? covale13 covale both ? A ASN 252 C ? ? ? 1_555 A MSE 253 N ? ? A ASN 230 A MSE 231 1_555 ? ? ? ? ? ? ? 1.333 ? covale14 covale both ? A MSE 253 C ? ? ? 1_555 A LEU 254 N ? ? A MSE 231 A LEU 232 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? anti-parallel AA1 7 8 ? parallel AA1 8 9 ? parallel AA1 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 43 ? HIS A 50 ? THR A 21 HIS A 28 AA1 2 TYR A 53 ? LEU A 60 ? TYR A 31 LEU A 38 AA1 3 SER A 63 ? GLN A 69 ? SER A 41 GLN A 47 AA1 4 ALA A 25 ? GLY A 29 ? ALA A 3 GLY A 7 AA1 5 TYR A 92 ? GLY A 101 ? TYR A 70 GLY A 79 AA1 6 PHE A 217 ? ILE A 226 ? PHE A 195 ILE A 204 AA1 7 ILE A 111 ? TYR A 119 ? ILE A 89 TYR A 97 AA1 8 ALA A 168 ? THR A 175 ? ALA A 146 THR A 153 AA1 9 MSE A 196 ? GLU A 200 ? MSE A 174 GLU A 178 AA1 10 TYR A 92 ? GLY A 101 ? TYR A 70 GLY A 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 46 ? N LYS A 24 O GLN A 57 ? O GLN A 35 AA1 2 3 N HIS A 56 ? N HIS A 34 O ILE A 67 ? O ILE A 45 AA1 3 4 O VAL A 66 ? O VAL A 44 N ILE A 27 ? N ILE A 5 AA1 4 5 N GLY A 26 ? N GLY A 4 O VAL A 94 ? O VAL A 72 AA1 5 6 N ASN A 95 ? N ASN A 73 O ILE A 220 ? O ILE A 198 AA1 6 7 O ARG A 221 ? O ARG A 199 N VAL A 112 ? N VAL A 90 AA1 7 8 N VAL A 113 ? N VAL A 91 O VAL A 169 ? O VAL A 147 AA1 8 9 N LEU A 172 ? N LEU A 150 O ALA A 197 ? O ALA A 175 AA1 9 10 O VAL A 199 ? O VAL A 177 N GLY A 100 ? N GLY A 78 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GLY 301 ? 1 'binding site for residue GLY A 301' AC2 Software A ADE 302 ? 10 'binding site for residue ADE A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 MSE A 31 ? MSE A 9 . ? 1_555 ? 2 AC2 10 ALA A 99 ? ALA A 77 . ? 1_555 ? 3 AC2 10 GLY A 100 ? GLY A 78 . ? 1_555 ? 4 AC2 10 PHE A 179 ? PHE A 157 . ? 1_555 ? 5 AC2 10 MSE A 180 ? MSE A 158 . ? 1_555 ? 6 AC2 10 VAL A 199 ? VAL A 177 . ? 1_555 ? 7 AC2 10 GLU A 200 ? GLU A 178 . ? 1_555 ? 8 AC2 10 MSE A 201 ? MSE A 179 . ? 1_555 ? 9 AC2 10 SER A 224 ? SER A 202 . ? 1_555 ? 10 AC2 10 ASP A 225 ? ASP A 203 . ? 1_555 ? 11 AC2 10 HOH D . ? HOH A 469 . ? 1_555 ? # _atom_sites.entry_id 5DK6 _atom_sites.fract_transf_matrix[1][1] 0.006876 _atom_sites.fract_transf_matrix[1][2] 0.003970 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007940 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014216 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -22 ? ? ? A . n A 1 2 HIS 2 -21 ? ? ? A . n A 1 3 HIS 3 -20 ? ? ? A . n A 1 4 HIS 4 -19 ? ? ? A . n A 1 5 HIS 5 -18 ? ? ? A . n A 1 6 HIS 6 -17 ? ? ? A . n A 1 7 HIS 7 -16 ? ? ? A . n A 1 8 SER 8 -15 ? ? ? A . n A 1 9 SER 9 -14 ? ? ? A . n A 1 10 GLY 10 -13 ? ? ? A . n A 1 11 VAL 11 -12 ? ? ? A . n A 1 12 ASP 12 -11 ? ? ? A . n A 1 13 LEU 13 -10 ? ? ? A . n A 1 14 GLY 14 -9 ? ? ? A . n A 1 15 THR 15 -8 ? ? ? A . n A 1 16 GLU 16 -7 ? ? ? A . n A 1 17 ASN 17 -6 ? ? ? A . n A 1 18 LEU 18 -5 -5 LEU LEU A . n A 1 19 TYR 19 -4 -4 TYR TYR A . n A 1 20 PHE 20 -3 -3 PHE PHE A . n A 1 21 GLN 21 -2 -2 GLN GLN A . n A 1 22 SER 22 -1 -1 SER SER A . n A 1 23 MSE 23 1 1 MSE MSE A . n A 1 24 LYS 24 2 2 LYS LYS A . n A 1 25 ALA 25 3 3 ALA ALA A . n A 1 26 GLY 26 4 4 GLY GLY A . n A 1 27 ILE 27 5 5 ILE ILE A . n A 1 28 ILE 28 6 6 ILE ILE A . n A 1 29 GLY 29 7 7 GLY GLY A . n A 1 30 ALA 30 8 8 ALA ALA A . n A 1 31 MSE 31 9 9 MSE MSE A . n A 1 32 GLU 32 10 10 GLU GLU A . n A 1 33 PRO 33 11 11 PRO PRO A . n A 1 34 GLU 34 12 12 GLU GLU A . n A 1 35 VAL 35 13 13 VAL VAL A . n A 1 36 ALA 36 14 14 ALA ALA A . n A 1 37 ILE 37 15 15 ILE ILE A . n A 1 38 LEU 38 16 16 LEU LEU A . n A 1 39 LYS 39 17 17 LYS LYS A . n A 1 40 GLU 40 18 18 GLU GLU A . n A 1 41 LYS 41 19 19 LYS LYS A . n A 1 42 LEU 42 20 20 LEU LEU A . n A 1 43 THR 43 21 21 THR THR A . n A 1 44 ASP 44 22 22 ASP ASP A . n A 1 45 ALA 45 23 23 ALA ALA A . n A 1 46 LYS 46 24 24 LYS LYS A . n A 1 47 SER 47 25 25 SER SER A . n A 1 48 THR 48 26 26 THR THR A . n A 1 49 GLU 49 27 27 GLU GLU A . n A 1 50 HIS 50 28 28 HIS HIS A . n A 1 51 ALA 51 29 29 ALA ALA A . n A 1 52 GLY 52 30 30 GLY GLY A . n A 1 53 TYR 53 31 31 TYR TYR A . n A 1 54 THR 54 32 32 THR THR A . n A 1 55 PHE 55 33 33 PHE PHE A . n A 1 56 HIS 56 34 34 HIS HIS A . n A 1 57 GLN 57 35 35 GLN GLN A . n A 1 58 GLY 58 36 36 GLY GLY A . n A 1 59 GLN 59 37 37 GLN GLN A . n A 1 60 LEU 60 38 38 LEU LEU A . n A 1 61 ASP 61 39 39 ASP ASP A . n A 1 62 GLY 62 40 40 GLY GLY A . n A 1 63 SER 63 41 41 SER SER A . n A 1 64 ASP 64 42 42 ASP ASP A . n A 1 65 VAL 65 43 43 VAL VAL A . n A 1 66 VAL 66 44 44 VAL VAL A . n A 1 67 ILE 67 45 45 ILE ILE A . n A 1 68 VAL 68 46 46 VAL VAL A . n A 1 69 GLN 69 47 47 GLN GLN A . n A 1 70 SER 70 48 48 SER SER A . n A 1 71 GLY 71 49 49 GLY GLY A . n A 1 72 ILE 72 50 50 ILE ILE A . n A 1 73 GLY 73 51 51 GLY GLY A . n A 1 74 LYS 74 52 52 LYS LYS A . n A 1 75 VAL 75 53 53 VAL VAL A . n A 1 76 ALA 76 54 54 ALA ALA A . n A 1 77 ALA 77 55 55 ALA ALA A . n A 1 78 ALA 78 56 56 ALA ALA A . n A 1 79 LEU 79 57 57 LEU LEU A . n A 1 80 ALA 80 58 58 ALA ALA A . n A 1 81 THR 81 59 59 THR THR A . n A 1 82 ALA 82 60 60 ALA ALA A . n A 1 83 ILE 83 61 61 ILE ILE A . n A 1 84 LEU 84 62 62 LEU LEU A . n A 1 85 ILE 85 63 63 ILE ILE A . n A 1 86 ASP 86 64 64 ASP ASP A . n A 1 87 ARG 87 65 65 ARG ARG A . n A 1 88 PHE 88 66 66 PHE PHE A . n A 1 89 GLN 89 67 67 GLN GLN A . n A 1 90 VAL 90 68 68 VAL VAL A . n A 1 91 ASP 91 69 69 ASP ASP A . n A 1 92 TYR 92 70 70 TYR TYR A . n A 1 93 VAL 93 71 71 VAL VAL A . n A 1 94 VAL 94 72 72 VAL VAL A . n A 1 95 ASN 95 73 73 ASN ASN A . n A 1 96 THR 96 74 74 THR THR A . n A 1 97 GLY 97 75 75 GLY GLY A . n A 1 98 SER 98 76 76 SER SER A . n A 1 99 ALA 99 77 77 ALA ALA A . n A 1 100 GLY 100 78 78 GLY GLY A . n A 1 101 GLY 101 79 79 GLY GLY A . n A 1 102 PHE 102 80 80 PHE PHE A . n A 1 103 ASP 103 81 81 ASP ASP A . n A 1 104 ALA 104 82 82 ALA ALA A . n A 1 105 SER 105 83 83 SER SER A . n A 1 106 LEU 106 84 84 LEU LEU A . n A 1 107 LYS 107 85 85 LYS LYS A . n A 1 108 VAL 108 86 86 VAL VAL A . n A 1 109 GLY 109 87 87 GLY GLY A . n A 1 110 ASP 110 88 88 ASP ASP A . n A 1 111 ILE 111 89 89 ILE ILE A . n A 1 112 VAL 112 90 90 VAL VAL A . n A 1 113 VAL 113 91 91 VAL VAL A . n A 1 114 SER 114 92 92 SER SER A . n A 1 115 SER 115 93 93 SER SER A . n A 1 116 GLU 116 94 94 GLU GLU A . n A 1 117 VAL 117 95 95 VAL VAL A . n A 1 118 ARG 118 96 96 ARG ARG A . n A 1 119 TYR 119 97 97 TYR TYR A . n A 1 120 HIS 120 98 98 HIS HIS A . n A 1 121 ASP 121 99 99 ASP ASP A . n A 1 122 VAL 122 100 100 VAL VAL A . n A 1 123 ASP 123 101 101 ASP ASP A . n A 1 124 LEU 124 102 102 LEU LEU A . n A 1 125 THR 125 103 103 THR THR A . n A 1 126 ALA 126 104 104 ALA ALA A . n A 1 127 PHE 127 105 105 PHE PHE A . n A 1 128 GLY 128 106 106 GLY GLY A . n A 1 129 TYR 129 107 107 TYR TYR A . n A 1 130 GLU 130 108 108 GLU GLU A . n A 1 131 ILE 131 109 109 ILE ILE A . n A 1 132 GLY 132 110 110 GLY GLY A . n A 1 133 GLN 133 111 111 GLN GLN A . n A 1 134 LEU 134 112 112 LEU LEU A . n A 1 135 PRO 135 113 113 PRO PRO A . n A 1 136 ALA 136 114 114 ALA ALA A . n A 1 137 ASN 137 115 115 ASN ASN A . n A 1 138 PRO 138 116 116 PRO PRO A . n A 1 139 ALA 139 117 117 ALA ALA A . n A 1 140 ALA 140 118 118 ALA ALA A . n A 1 141 PHE 141 119 119 PHE PHE A . n A 1 142 MSE 142 120 120 MSE MSE A . n A 1 143 PRO 143 121 121 PRO PRO A . n A 1 144 HIS 144 122 122 HIS HIS A . n A 1 145 ASP 145 123 123 ASP ASP A . n A 1 146 ASP 146 124 124 ASP ASP A . n A 1 147 LEU 147 125 125 LEU LEU A . n A 1 148 VAL 148 126 126 VAL VAL A . n A 1 149 ALA 149 127 127 ALA ALA A . n A 1 150 ALA 150 128 128 ALA ALA A . n A 1 151 ALA 151 129 129 ALA ALA A . n A 1 152 LYS 152 130 130 LYS LYS A . n A 1 153 LYS 153 131 131 LYS LYS A . n A 1 154 GLY 154 132 132 GLY GLY A . n A 1 155 ILE 155 133 133 ILE ILE A . n A 1 156 GLU 156 134 134 GLU GLU A . n A 1 157 GLN 157 135 135 GLN GLN A . n A 1 158 LEU 158 136 136 LEU LEU A . n A 1 159 SER 159 137 137 SER SER A . n A 1 160 GLN 160 138 138 GLN GLN A . n A 1 161 THR 161 139 ? ? ? A . n A 1 162 ALA 162 140 ? ? ? A . n A 1 163 GLY 163 141 ? ? ? A . n A 1 164 GLU 164 142 ? ? ? A . n A 1 165 ASN 165 143 143 ASN ASN A . n A 1 166 ILE 166 144 144 ILE ILE A . n A 1 167 LYS 167 145 145 LYS LYS A . n A 1 168 ALA 168 146 146 ALA ALA A . n A 1 169 VAL 169 147 147 VAL VAL A . n A 1 170 THR 170 148 148 THR THR A . n A 1 171 GLY 171 149 149 GLY GLY A . n A 1 172 LEU 172 150 150 LEU LEU A . n A 1 173 ILE 173 151 151 ILE ILE A . n A 1 174 THR 174 152 152 THR THR A . n A 1 175 THR 175 153 153 THR THR A . n A 1 176 GLY 176 154 154 GLY GLY A . n A 1 177 ASP 177 155 155 ASP ASP A . n A 1 178 THR 178 156 156 THR THR A . n A 1 179 PHE 179 157 157 PHE PHE A . n A 1 180 MSE 180 158 158 MSE MSE A . n A 1 181 THR 181 159 159 THR THR A . n A 1 182 LYS 182 160 160 LYS LYS A . n A 1 183 GLU 183 161 161 GLU GLU A . n A 1 184 GLU 184 162 162 GLU GLU A . n A 1 185 ASP 185 163 163 ASP ASP A . n A 1 186 VAL 186 164 164 VAL VAL A . n A 1 187 ALA 187 165 165 ALA ALA A . n A 1 188 LYS 188 166 166 LYS LYS A . n A 1 189 ALA 189 167 167 ALA ALA A . n A 1 190 ARG 190 168 168 ARG ARG A . n A 1 191 ALA 191 169 169 ALA ALA A . n A 1 192 ASN 192 170 170 ASN ASN A . n A 1 193 PHE 193 171 171 PHE PHE A . n A 1 194 PRO 194 172 172 PRO PRO A . n A 1 195 THR 195 173 173 THR THR A . n A 1 196 MSE 196 174 174 MSE MSE A . n A 1 197 ALA 197 175 175 ALA ALA A . n A 1 198 ALA 198 176 176 ALA ALA A . n A 1 199 VAL 199 177 177 VAL VAL A . n A 1 200 GLU 200 178 178 GLU GLU A . n A 1 201 MSE 201 179 179 MSE MSE A . n A 1 202 GLU 202 180 180 GLU GLU A . n A 1 203 GLY 203 181 181 GLY GLY A . n A 1 204 ALA 204 182 182 ALA ALA A . n A 1 205 ALA 205 183 183 ALA ALA A . n A 1 206 ILE 206 184 184 ILE ILE A . n A 1 207 ALA 207 185 185 ALA ALA A . n A 1 208 GLN 208 186 186 GLN GLN A . n A 1 209 ALA 209 187 187 ALA ALA A . n A 1 210 CYS 210 188 188 CYS CYS A . n A 1 211 LEU 211 189 189 LEU LEU A . n A 1 212 GLN 212 190 190 GLN GLN A . n A 1 213 LEU 213 191 191 LEU LEU A . n A 1 214 LYS 214 192 192 LYS LYS A . n A 1 215 THR 215 193 193 THR THR A . n A 1 216 PRO 216 194 194 PRO PRO A . n A 1 217 PHE 217 195 195 PHE PHE A . n A 1 218 VAL 218 196 196 VAL VAL A . n A 1 219 VAL 219 197 197 VAL VAL A . n A 1 220 ILE 220 198 198 ILE ILE A . n A 1 221 ARG 221 199 199 ARG ARG A . n A 1 222 SER 222 200 200 SER SER A . n A 1 223 LEU 223 201 201 LEU LEU A . n A 1 224 SER 224 202 202 SER SER A . n A 1 225 ASP 225 203 203 ASP ASP A . n A 1 226 ILE 226 204 204 ILE ILE A . n A 1 227 ALA 227 205 205 ALA ALA A . n A 1 228 GLY 228 206 206 GLY GLY A . n A 1 229 LYS 229 207 207 LYS LYS A . n A 1 230 GLU 230 208 208 GLU GLU A . n A 1 231 SER 231 209 209 SER SER A . n A 1 232 PRO 232 210 210 PRO PRO A . n A 1 233 HIS 233 211 211 HIS HIS A . n A 1 234 THR 234 212 212 THR THR A . n A 1 235 PHE 235 213 213 PHE PHE A . n A 1 236 GLU 236 214 214 GLU GLU A . n A 1 237 GLU 237 215 215 GLU GLU A . n A 1 238 TYR 238 216 216 TYR TYR A . n A 1 239 LEU 239 217 217 LEU LEU A . n A 1 240 GLU 240 218 218 GLU GLU A . n A 1 241 THR 241 219 219 THR THR A . n A 1 242 ALA 242 220 220 ALA ALA A . n A 1 243 ALA 243 221 221 ALA ALA A . n A 1 244 VAL 244 222 222 VAL VAL A . n A 1 245 ASN 245 223 223 ASN ASN A . n A 1 246 SER 246 224 224 SER SER A . n A 1 247 SER 247 225 225 SER SER A . n A 1 248 GLN 248 226 226 GLN GLN A . n A 1 249 LEU 249 227 227 LEU LEU A . n A 1 250 VAL 250 228 228 VAL VAL A . n A 1 251 LEU 251 229 229 LEU LEU A . n A 1 252 ASN 252 230 230 ASN ASN A . n A 1 253 MSE 253 231 231 MSE MSE A . n A 1 254 LEU 254 232 232 LEU LEU A . n A 1 255 GLY 255 233 233 GLY GLY A . n A 1 256 GLN 256 234 234 GLN GLN A . n A 1 257 LEU 257 235 235 LEU LEU A . n A 1 258 LYS 258 236 236 LYS LYS A . n A 1 259 GLY 259 237 237 GLY GLY A . n A 1 260 LYS 260 238 238 LYS LYS A . n A 1 261 VAL 261 239 239 VAL VAL A . n A 1 262 LEU 262 240 240 LEU LEU A . n A 1 263 SER 263 241 241 SER SER A . n A 1 264 ALA 264 242 ? ? ? A . n A 1 265 ALA 265 243 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'New York Structural Genomics Research Consortium' _pdbx_SG_project.initial_of_center NYSGRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY 1 301 301 GLY GLY A . C 3 ADE 1 302 302 ADE ADE A . D 4 HOH 1 401 401 HOH HOH A . D 4 HOH 2 402 402 HOH HOH A . D 4 HOH 3 403 403 HOH HOH A . D 4 HOH 4 404 404 HOH HOH A . D 4 HOH 5 405 405 HOH HOH A . D 4 HOH 6 406 406 HOH HOH A . D 4 HOH 7 407 407 HOH HOH A . D 4 HOH 8 408 408 HOH HOH A . D 4 HOH 9 409 409 HOH HOH A . D 4 HOH 10 410 410 HOH HOH A . D 4 HOH 11 411 411 HOH HOH A . D 4 HOH 12 412 412 HOH HOH A . D 4 HOH 13 413 413 HOH HOH A . D 4 HOH 14 414 414 HOH HOH A . D 4 HOH 15 415 415 HOH HOH A . D 4 HOH 16 416 416 HOH HOH A . D 4 HOH 17 417 417 HOH HOH A . D 4 HOH 18 418 418 HOH HOH A . D 4 HOH 19 419 419 HOH HOH A . D 4 HOH 20 420 420 HOH HOH A . D 4 HOH 21 421 421 HOH HOH A . D 4 HOH 22 422 422 HOH HOH A . D 4 HOH 23 423 423 HOH HOH A . D 4 HOH 24 424 424 HOH HOH A . D 4 HOH 25 425 425 HOH HOH A . D 4 HOH 26 426 426 HOH HOH A . D 4 HOH 27 427 427 HOH HOH A . D 4 HOH 28 428 428 HOH HOH A . D 4 HOH 29 429 429 HOH HOH A . D 4 HOH 30 430 430 HOH HOH A . D 4 HOH 31 431 431 HOH HOH A . D 4 HOH 32 432 432 HOH HOH A . D 4 HOH 33 433 433 HOH HOH A . D 4 HOH 34 434 434 HOH HOH A . D 4 HOH 35 435 435 HOH HOH A . D 4 HOH 36 436 436 HOH HOH A . D 4 HOH 37 437 437 HOH HOH A . D 4 HOH 38 438 438 HOH HOH A . D 4 HOH 39 439 439 HOH HOH A . D 4 HOH 40 440 440 HOH HOH A . D 4 HOH 41 441 441 HOH HOH A . D 4 HOH 42 442 442 HOH HOH A . D 4 HOH 43 443 443 HOH HOH A . D 4 HOH 44 444 444 HOH HOH A . D 4 HOH 45 445 445 HOH HOH A . D 4 HOH 46 446 446 HOH HOH A . D 4 HOH 47 447 447 HOH HOH A . D 4 HOH 48 448 448 HOH HOH A . D 4 HOH 49 449 449 HOH HOH A . D 4 HOH 50 450 450 HOH HOH A . D 4 HOH 51 451 451 HOH HOH A . D 4 HOH 52 452 452 HOH HOH A . D 4 HOH 53 453 453 HOH HOH A . D 4 HOH 54 454 454 HOH HOH A . D 4 HOH 55 455 455 HOH HOH A . D 4 HOH 56 456 456 HOH HOH A . D 4 HOH 57 457 457 HOH HOH A . D 4 HOH 58 458 458 HOH HOH A . D 4 HOH 59 459 459 HOH HOH A . D 4 HOH 60 460 460 HOH HOH A . D 4 HOH 61 461 461 HOH HOH A . D 4 HOH 62 462 462 HOH HOH A . D 4 HOH 63 463 463 HOH HOH A . D 4 HOH 64 464 464 HOH HOH A . D 4 HOH 65 465 465 HOH HOH A . D 4 HOH 66 466 466 HOH HOH A . D 4 HOH 67 467 467 HOH HOH A . D 4 HOH 68 468 468 HOH HOH A . D 4 HOH 69 469 469 HOH HOH A . D 4 HOH 70 470 470 HOH HOH A . D 4 HOH 71 471 471 HOH HOH A . D 4 HOH 72 472 472 HOH HOH A . D 4 HOH 73 473 473 HOH HOH A . D 4 HOH 74 474 474 HOH HOH A . D 4 HOH 75 475 475 HOH HOH A . D 4 HOH 76 476 476 HOH HOH A . D 4 HOH 77 477 477 HOH HOH A . D 4 HOH 78 478 478 HOH HOH A . D 4 HOH 79 479 479 HOH HOH A . D 4 HOH 80 480 480 HOH HOH A . D 4 HOH 81 481 481 HOH HOH A . D 4 HOH 82 482 482 HOH HOH A . D 4 HOH 83 483 483 HOH HOH A . D 4 HOH 84 484 484 HOH HOH A . D 4 HOH 85 485 485 HOH HOH A . D 4 HOH 86 486 486 HOH HOH A . D 4 HOH 87 487 487 HOH HOH A . D 4 HOH 88 488 488 HOH HOH A . D 4 HOH 89 489 489 HOH HOH A . D 4 HOH 90 490 490 HOH HOH A . D 4 HOH 91 491 491 HOH HOH A . D 4 HOH 92 492 492 HOH HOH A . D 4 HOH 93 493 493 HOH HOH A . D 4 HOH 94 494 494 HOH HOH A . D 4 HOH 95 495 495 HOH HOH A . D 4 HOH 96 496 496 HOH HOH A . D 4 HOH 97 497 497 HOH HOH A . D 4 HOH 98 498 498 HOH HOH A . D 4 HOH 99 499 499 HOH HOH A . D 4 HOH 100 500 500 HOH HOH A . D 4 HOH 101 501 501 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 1 ? MET 'modified residue' 2 A MSE 31 A MSE 9 ? MET 'modified residue' 3 A MSE 142 A MSE 120 ? MET 'modified residue' 4 A MSE 180 A MSE 158 ? MET 'modified residue' 5 A MSE 196 A MSE 174 ? MET 'modified residue' 6 A MSE 201 A MSE 179 ? MET 'modified residue' 7 A MSE 253 A MSE 231 ? MET 'modified residue' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3770 ? 2 MORE -11 ? 2 'SSA (A^2)' 19060 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5000000000 -0.8660254038 0.0000000000 72.7135000000 -0.8660254038 -0.5000000000 0.0000000000 125.9434763962 0.0000000000 0.0000000000 -1.0000000000 82.0645000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 407 ? D HOH . 2 1 A HOH 474 ? D HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2015-11-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.280 _diffrn_reflns.pdbx_d_res_low 26.000 _diffrn_reflns.pdbx_number_obs 37023 _diffrn_reflns.pdbx_Rmerge_I_obs 0.100 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.00 _diffrn_reflns.pdbx_redundancy 3.90 _diffrn_reflns.pdbx_rejects ? _diffrn_reflns.pdbx_percent_possible_obs 96.40 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.number 143135 _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.90 26.00 ? ? 0.069 ? 1.024 5.30 ? 1 3.90 4.90 ? ? 0.100 ? 0.980 5.20 ? 1 3.40 3.90 ? ? 0.072 ? 1.005 4.90 ? 1 3.09 3.40 ? ? 0.106 ? 1.009 4.40 ? 1 2.87 3.09 ? ? 0.161 ? 0.998 3.90 ? 1 2.70 2.87 ? ? 0.214 ? 1.005 3.60 ? 1 2.57 2.70 ? ? 0.267 ? 0.986 3.30 ? 1 2.46 2.57 ? ? 0.314 ? 1.005 3.10 ? 1 2.36 2.46 ? ? 0.350 ? 0.985 2.60 ? 1 2.28 2.36 ? ? 0.337 ? 1.006 2.00 ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? 1.99.2 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9-1692 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 86 ? ? -37.80 129.67 2 1 GLU A 134 ? ? -96.13 43.61 3 1 GLU A 180 ? ? -140.99 -22.49 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ILE A 133 ? ? GLU A 134 ? ? 137.47 2 1 GLU A 134 ? ? GLN A 135 ? ? -140.50 3 1 GLN A 135 ? ? LEU A 136 ? ? -115.53 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id GLY _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 301 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id OXT _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id GLY _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id OXT # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -22 ? A MSE 1 2 1 Y 1 A HIS -21 ? A HIS 2 3 1 Y 1 A HIS -20 ? A HIS 3 4 1 Y 1 A HIS -19 ? A HIS 4 5 1 Y 1 A HIS -18 ? A HIS 5 6 1 Y 1 A HIS -17 ? A HIS 6 7 1 Y 1 A HIS -16 ? A HIS 7 8 1 Y 1 A SER -15 ? A SER 8 9 1 Y 1 A SER -14 ? A SER 9 10 1 Y 1 A GLY -13 ? A GLY 10 11 1 Y 1 A VAL -12 ? A VAL 11 12 1 Y 1 A ASP -11 ? A ASP 12 13 1 Y 1 A LEU -10 ? A LEU 13 14 1 Y 1 A GLY -9 ? A GLY 14 15 1 Y 1 A THR -8 ? A THR 15 16 1 Y 1 A GLU -7 ? A GLU 16 17 1 Y 1 A ASN -6 ? A ASN 17 18 1 Y 1 A THR 139 ? A THR 161 19 1 Y 1 A ALA 140 ? A ALA 162 20 1 Y 1 A GLY 141 ? A GLY 163 21 1 Y 1 A GLU 142 ? A GLU 164 22 1 Y 1 A ALA 242 ? A ALA 264 23 1 Y 1 A ALA 243 ? A ALA 265 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCINE GLY 3 ADENINE ADE 4 water HOH #