HEADER TRANSCRIPTION 03-SEP-15 5DKH TITLE CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN BRM (SMARCA2) IN COMPLEX TITLE 2 WITH A HYDROXYPHENYL PROPENONE INHIBITOR 17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 1373-1493; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE SMARCA2,BRG1-ASSOCIATED FACTOR 190B, COMPND 6 BAF190B,PROTEIN BRAHMA HOMOLOG,HBRM,SNF2-ALPHA,SWI/SNF-RELATED COMPND 7 MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A COMPND 8 MEMBER 2; COMPND 9 EC: 3.6.4.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMARCA2, BAF190B, BRM, SNF2A, SNF2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SWI-SNF COMPLEX, CHROMATIN REMODELING, BRG ASSOCIATED FACTORS (BAF), KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,D.R.OWEN,A.TAYLOR,O.FEDOROV,P.SAVITSKY,P.SIEJKA, AUTHOR 2 V.SRIKANNATHASAN,R.NOWAK,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 C.BOUNTRA,S.KNAPP REVDAT 2 10-JAN-24 5DKH 1 LINK REVDAT 1 14-SEP-16 5DKH 0 JRNL AUTH C.TALLANT,D.R.OWEN,A.TAYLOR,O.FEDOROV,P.SAVITSKY,P.SIEJKA, JRNL AUTH 2 V.SRIKANNATHASAN,R.NOWAK,F.VON DELFT,C.H.ARROWSMITH, JRNL AUTH 3 A.M.EDWARDS,C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN BRM (SMARCA2) JRNL TITL 2 IN COMPLEX WITH A HYDROXYPHENYL PROPENONE INHIBITOR 17 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2088 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2789 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.775 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2906 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2890 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3900 ; 1.762 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6682 ; 1.023 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 5.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;32.675 ;24.632 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 584 ;14.115 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.742 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 427 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3326 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 638 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1355 ; 1.402 ; 2.178 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1354 ; 1.400 ; 2.177 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1691 ; 2.126 ; 3.255 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1690 ; 2.127 ; 3.253 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1551 ; 2.110 ; 2.536 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1552 ; 2.109 ; 2.537 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2203 ; 3.352 ; 3.676 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3420 ; 5.212 ;17.657 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3365 ; 5.174 ;17.355 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1377 A 1492 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0361 30.9027 1.5463 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.0402 REMARK 3 T33: 0.0096 T12: 0.0368 REMARK 3 T13: -0.0291 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.1708 L22: 0.2900 REMARK 3 L33: 1.0568 L12: -0.1940 REMARK 3 L13: 0.2635 L23: 0.2387 REMARK 3 S TENSOR REMARK 3 S11: 0.1543 S12: 0.0487 S13: 0.0034 REMARK 3 S21: 0.0694 S22: -0.0725 S23: -0.0392 REMARK 3 S31: 0.1651 S32: -0.0306 S33: -0.0818 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1381 B 1490 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3302 19.6797 24.6182 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.0845 REMARK 3 T33: 0.0177 T12: -0.0449 REMARK 3 T13: 0.0001 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.1454 L22: 0.2714 REMARK 3 L33: 1.4084 L12: -0.1393 REMARK 3 L13: 0.2099 L23: 0.1385 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: -0.0264 S13: -0.0086 REMARK 3 S21: -0.0460 S22: -0.0195 S23: 0.0330 REMARK 3 S31: -0.2107 S32: -0.0224 S33: 0.0283 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1380 C 1492 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9415 4.1939 17.4158 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.0328 REMARK 3 T33: 0.0603 T12: -0.0343 REMARK 3 T13: 0.0387 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.6320 L22: 0.3181 REMARK 3 L33: 1.2479 L12: 0.2736 REMARK 3 L13: 0.0908 L23: 0.1204 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.0496 S13: -0.1244 REMARK 3 S21: -0.1179 S22: -0.0242 S23: -0.0382 REMARK 3 S31: -0.1138 S32: 0.0615 S33: 0.0247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45175 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.02500 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 1.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QY4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6K, 10% ETHYLENEGLYCOL, 0.1 REMARK 280 HEPES PH 7, 0.01M ZNCL2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.72000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1371 REMARK 465 MET A 1372 REMARK 465 ALA A 1373 REMARK 465 GLU A 1374 REMARK 465 LYS A 1375 REMARK 465 LEU A 1376 REMARK 465 GLU A 1493 REMARK 465 SER B 1371 REMARK 465 MET B 1372 REMARK 465 ALA B 1373 REMARK 465 GLU B 1374 REMARK 465 LYS B 1375 REMARK 465 LEU B 1376 REMARK 465 SER B 1377 REMARK 465 PRO B 1378 REMARK 465 ASN B 1379 REMARK 465 PRO B 1380 REMARK 465 GLU B 1491 REMARK 465 GLU B 1492 REMARK 465 GLU B 1493 REMARK 465 SER C 1371 REMARK 465 MET C 1372 REMARK 465 ALA C 1373 REMARK 465 GLU C 1374 REMARK 465 LYS C 1375 REMARK 465 LEU C 1376 REMARK 465 SER C 1377 REMARK 465 PRO C 1378 REMARK 465 ASN C 1379 REMARK 465 GLU C 1493 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B1426 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 1611 O HOH C 1643 1.22 REMARK 500 ZN ZN C 1501 O HOH C 1636 1.52 REMARK 500 O HOH A 1612 O HOH A 1635 1.53 REMARK 500 O HOH A 1655 O HOH A 1665 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ZN ZN B 1501 ZN ZN B 1502 3454 1.23 REMARK 500 O HOH C 1645 O HOH C 1646 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1439 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B1439 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B1439 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1491 -70.69 75.96 REMARK 500 ALA C1489 51.80 -146.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1441 NE2 REMARK 620 2 HIS A1458 NE2 34.6 REMARK 620 3 HOH A1601 O 76.1 97.4 REMARK 620 4 HOH A1656 O 140.1 132.5 129.6 REMARK 620 5 HOH A1657 O 88.5 105.9 111.3 55.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1441 NE2 REMARK 620 2 HIS A1458 NE2 49.8 REMARK 620 3 HOH A1616 O 45.6 4.2 REMARK 620 4 HOH A1656 O 44.5 6.0 2.8 REMARK 620 5 HOH A1657 O 44.9 7.6 5.5 2.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1441 NE2 REMARK 620 2 HIS B1458 NE2 37.5 REMARK 620 3 HOH B1654 O 31.5 7.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1458 NE2 REMARK 620 2 HOH B1634 O 62.7 REMARK 620 3 HOH B1654 O 64.7 2.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C1441 NE2 REMARK 620 2 HIS C1458 NE2 34.1 REMARK 620 3 HOH C1645 O 30.2 5.9 REMARK 620 4 HOH C1646 O 30.9 7.3 2.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C1441 NE2 REMARK 620 2 HIS C1458 NE2 50.0 REMARK 620 3 HOH C1633 O 94.2 54.8 REMARK 620 4 HOH C1636 O 80.4 127.0 163.9 REMARK 620 5 HOH C1645 O 147.1 143.0 88.2 88.4 REMARK 620 6 HOH C1646 O 91.4 113.9 85.3 79.8 56.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5C0 A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5C0 B 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1502 DBREF 5DKH A 1373 1493 UNP P51531 SMCA2_HUMAN 1373 1493 DBREF 5DKH B 1373 1493 UNP P51531 SMCA2_HUMAN 1373 1493 DBREF 5DKH C 1373 1493 UNP P51531 SMCA2_HUMAN 1373 1493 SEQADV 5DKH SER A 1371 UNP P51531 EXPRESSION TAG SEQADV 5DKH MET A 1372 UNP P51531 EXPRESSION TAG SEQADV 5DKH SER B 1371 UNP P51531 EXPRESSION TAG SEQADV 5DKH MET B 1372 UNP P51531 EXPRESSION TAG SEQADV 5DKH SER C 1371 UNP P51531 EXPRESSION TAG SEQADV 5DKH MET C 1372 UNP P51531 EXPRESSION TAG SEQRES 1 A 123 SER MET ALA GLU LYS LEU SER PRO ASN PRO PRO LYS LEU SEQRES 2 A 123 THR LYS GLN MET ASN ALA ILE ILE ASP THR VAL ILE ASN SEQRES 3 A 123 TYR LYS ASP SER SER GLY ARG GLN LEU SER GLU VAL PHE SEQRES 4 A 123 ILE GLN LEU PRO SER ARG LYS GLU LEU PRO GLU TYR TYR SEQRES 5 A 123 GLU LEU ILE ARG LYS PRO VAL ASP PHE LYS LYS ILE LYS SEQRES 6 A 123 GLU ARG ILE ARG ASN HIS LYS TYR ARG SER LEU GLY ASP SEQRES 7 A 123 LEU GLU LYS ASP VAL MET LEU LEU CYS HIS ASN ALA GLN SEQRES 8 A 123 THR PHE ASN LEU GLU GLY SER GLN ILE TYR GLU ASP SER SEQRES 9 A 123 ILE VAL LEU GLN SER VAL PHE LYS SER ALA ARG GLN LYS SEQRES 10 A 123 ILE ALA LYS GLU GLU GLU SEQRES 1 B 123 SER MET ALA GLU LYS LEU SER PRO ASN PRO PRO LYS LEU SEQRES 2 B 123 THR LYS GLN MET ASN ALA ILE ILE ASP THR VAL ILE ASN SEQRES 3 B 123 TYR LYS ASP SER SER GLY ARG GLN LEU SER GLU VAL PHE SEQRES 4 B 123 ILE GLN LEU PRO SER ARG LYS GLU LEU PRO GLU TYR TYR SEQRES 5 B 123 GLU LEU ILE ARG LYS PRO VAL ASP PHE LYS LYS ILE LYS SEQRES 6 B 123 GLU ARG ILE ARG ASN HIS LYS TYR ARG SER LEU GLY ASP SEQRES 7 B 123 LEU GLU LYS ASP VAL MET LEU LEU CYS HIS ASN ALA GLN SEQRES 8 B 123 THR PHE ASN LEU GLU GLY SER GLN ILE TYR GLU ASP SER SEQRES 9 B 123 ILE VAL LEU GLN SER VAL PHE LYS SER ALA ARG GLN LYS SEQRES 10 B 123 ILE ALA LYS GLU GLU GLU SEQRES 1 C 123 SER MET ALA GLU LYS LEU SER PRO ASN PRO PRO LYS LEU SEQRES 2 C 123 THR LYS GLN MET ASN ALA ILE ILE ASP THR VAL ILE ASN SEQRES 3 C 123 TYR LYS ASP SER SER GLY ARG GLN LEU SER GLU VAL PHE SEQRES 4 C 123 ILE GLN LEU PRO SER ARG LYS GLU LEU PRO GLU TYR TYR SEQRES 5 C 123 GLU LEU ILE ARG LYS PRO VAL ASP PHE LYS LYS ILE LYS SEQRES 6 C 123 GLU ARG ILE ARG ASN HIS LYS TYR ARG SER LEU GLY ASP SEQRES 7 C 123 LEU GLU LYS ASP VAL MET LEU LEU CYS HIS ASN ALA GLN SEQRES 8 C 123 THR PHE ASN LEU GLU GLY SER GLN ILE TYR GLU ASP SER SEQRES 9 C 123 ILE VAL LEU GLN SER VAL PHE LYS SER ALA ARG GLN LYS SEQRES 10 C 123 ILE ALA LYS GLU GLU GLU HET ZN A1501 1 HET ZN A1502 1 HET 5C0 A1503 27 HET ZN B1501 1 HET ZN B1502 1 HET EDO B1503 4 HET EDO B1504 4 HET 5C0 B1505 27 HET ZN C1501 1 HET ZN C1502 1 HETNAM ZN ZINC ION HETNAM 5C0 (2E)-3-[(6S,9R)-4-(CYCLOPROPYLAMINO)-6,7,8,9- HETNAM 2 5C0 TETRAHYDRO-5H-6,9-EPIMINOCYCLOHEPTA[D]PYRIMIDIN-10- HETNAM 3 5C0 YL]-1-(2-HYDROXYPHENYL)PROP-2-EN-1-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ZN 6(ZN 2+) FORMUL 6 5C0 2(C21 H22 N4 O2) FORMUL 9 EDO 2(C2 H6 O2) FORMUL 14 HOH *177(H2 O) HELIX 1 AA1 PRO A 1380 TYR A 1397 1 18 HELIX 2 AA2 SER A 1406 ILE A 1410 5 5 HELIX 3 AA3 LEU A 1418 ILE A 1425 1 8 HELIX 4 AA4 ASP A 1430 ASN A 1440 1 11 HELIX 5 AA5 SER A 1445 ASN A 1464 1 20 HELIX 6 AA6 SER A 1468 LYS A 1490 1 23 HELIX 7 AA7 LYS B 1382 TYR B 1397 1 16 HELIX 8 AA8 SER B 1406 ILE B 1410 5 5 HELIX 9 AA9 LEU B 1418 ILE B 1425 1 8 HELIX 10 AB1 ASP B 1430 ASN B 1440 1 11 HELIX 11 AB2 SER B 1445 ASN B 1464 1 20 HELIX 12 AB3 SER B 1468 LYS B 1490 1 23 HELIX 13 AB4 PRO C 1381 TYR C 1397 1 17 HELIX 14 AB5 SER C 1406 ILE C 1410 5 5 HELIX 15 AB6 LEU C 1418 ILE C 1425 1 8 HELIX 16 AB7 ASP C 1430 ASN C 1440 1 11 HELIX 17 AB8 SER C 1445 ASN C 1464 1 20 HELIX 18 AB9 SER C 1468 LYS C 1490 1 23 LINK NE2 HIS A1441 ZN ZN A1501 1555 1555 2.01 LINK NE2 HIS A1441 ZN ZN A1502 1555 3564 2.46 LINK NE2 HIS A1458 ZN ZN A1501 1555 2665 2.01 LINK NE2 HIS A1458 ZN ZN A1502 1555 1555 2.12 LINK ZN ZN A1501 O HOH A1601 1555 1555 1.74 LINK ZN ZN A1501 O HOH A1656 1555 3564 2.52 LINK ZN ZN A1501 O HOH A1657 1555 1555 2.59 LINK ZN ZN A1502 O HOH A1616 1555 2665 1.88 LINK ZN ZN A1502 O HOH A1656 1555 1555 2.01 LINK ZN ZN A1502 O HOH A1657 1555 2665 2.35 LINK NE2 HIS B1441 ZN ZN B1502 1555 3454 1.98 LINK NE2 HIS B1458 ZN ZN B1501 1555 2565 2.45 LINK NE2 HIS B1458 ZN ZN B1502 1555 1555 2.19 LINK ZN ZN B1501 O HOH B1634 1555 1555 2.66 LINK ZN ZN B1501 O HOH B1654 1555 1555 1.82 LINK ZN ZN B1502 O HOH B1654 1555 2565 2.59 LINK NE2 HIS C1441 ZN ZN C1501 1555 3554 2.00 LINK NE2 HIS C1441 ZN ZN C1502 1555 1555 2.44 LINK NE2 HIS C1458 ZN ZN C1501 1555 1555 2.27 LINK NE2 HIS C1458 ZN ZN C1502 1555 2555 1.97 LINK ZN ZN C1501 O HOH C1645 1555 1555 2.57 LINK ZN ZN C1501 O HOH C1646 1555 2555 2.49 LINK ZN ZN C1502 O HOH C1633 1555 1555 2.02 LINK ZN ZN C1502 O HOH C1636 1555 3554 2.18 LINK ZN ZN C1502 O HOH C1645 1555 3554 2.10 LINK ZN ZN C1502 O HOH C1646 1555 1555 2.44 SITE 1 AC1 7 HIS A1441 HIS A1458 ZN A1502 HOH A1601 SITE 2 AC1 7 HOH A1616 HOH A1656 HOH A1657 SITE 1 AC2 8 ARG A1439 HIS A1441 HIS A1458 ZN A1501 SITE 2 AC2 8 HOH A1601 HOH A1616 HOH A1656 HOH A1657 SITE 1 AC3 13 VAL A1408 PHE A1409 LEU A1412 GLU A1417 SITE 2 AC3 13 LEU A1418 TYR A1421 VAL A1429 ASN A1459 SITE 3 AC3 13 ALA A1460 ASN A1464 ILE A1470 HOH A1610 SITE 4 AC3 13 HOH A1637 SITE 1 AC4 5 HIS B1441 HIS B1458 ZN B1502 HOH B1634 SITE 2 AC4 5 HOH B1654 SITE 1 AC5 4 HIS B1441 HIS B1458 ZN B1501 HOH B1654 SITE 1 AC6 3 GLY B1467 GLU B1472 GLU C1417 SITE 1 AC7 4 LYS A1382 GLU B1417 LYS C1490 GLU C1491 SITE 1 AC8 11 ALA A1489 VAL B1408 PHE B1409 LEU B1412 SITE 2 AC8 11 TYR B1421 VAL B1429 ALA B1460 ASN B1464 SITE 3 AC8 11 ILE B1470 HOH B1619 HOH B1637 SITE 1 AC9 7 HIS C1441 HIS C1458 ZN C1502 HOH C1633 SITE 2 AC9 7 HOH C1636 HOH C1645 HOH C1646 SITE 1 AD1 7 HIS C1441 HIS C1458 ZN C1501 HOH C1633 SITE 2 AD1 7 HOH C1636 HOH C1645 HOH C1646 CRYST1 63.997 63.997 89.160 90.00 90.00 120.00 P 31 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015626 0.009022 0.000000 0.00000 SCALE2 0.000000 0.018043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011216 0.00000