HEADER MEMBRANE PROTEIN 04-SEP-15 5DL6 TITLE CRYSTAL STRUCTURE OF ACINETOBACTER BAUMANNII OCCAB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PORIN FOR VANILLATE TRAFFICKING (VANP); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII AB307-0294; SOURCE 3 ORGANISM_TAXID: 557600; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OUTER MEMBRANE PROTEIN, BETA-BARREL, ANTIBIOTIC UPTAKE ACINETOBACTER, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,A.BASLE,B.VAN DEN BERG REVDAT 3 10-JAN-24 5DL6 1 REMARK REVDAT 2 10-FEB-16 5DL6 1 JRNL REVDAT 1 03-FEB-16 5DL6 0 JRNL AUTH M.ZAHN,S.P.BHAMIDIMARRI,A.BASLE,M.WINTERHALTER, JRNL AUTH 2 B.VAN DEN BERG JRNL TITL STRUCTURAL INSIGHTS INTO OUTER MEMBRANE PERMEABILITY OF JRNL TITL 2 ACINETOBACTER BAUMANNII. JRNL REF STRUCTURE V. 24 221 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26805524 JRNL DOI 10.1016/J.STR.2015.12.009 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 14888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1085 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.17000 REMARK 3 B22 (A**2) : 1.17000 REMARK 3 B33 (A**2) : -3.79000 REMARK 3 B12 (A**2) : 0.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.845 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.390 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.367 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.275 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3250 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2958 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4402 ; 2.177 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6794 ; 1.145 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 9.573 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;38.265 ;24.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 524 ;19.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.080 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3763 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 815 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1578 ; 2.032 ; 4.137 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1577 ; 2.032 ; 4.136 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1969 ; 3.275 ; 6.204 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1970 ; 3.275 ; 6.204 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1672 ; 2.145 ; 4.371 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1672 ; 2.145 ; 4.371 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2433 ; 3.481 ; 6.483 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3397 ; 5.297 ;33.106 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3398 ; 5.297 ;33.109 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5214 45.2200 25.8263 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: 0.1216 REMARK 3 T33: 0.0689 T12: 0.0443 REMARK 3 T13: -0.0219 T23: -0.0885 REMARK 3 L TENSOR REMARK 3 L11: 2.0758 L22: 6.0531 REMARK 3 L33: 5.5523 L12: 0.5928 REMARK 3 L13: 0.1649 L23: -4.3404 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: 0.0191 S13: -0.0074 REMARK 3 S21: -0.1769 S22: -0.0051 S23: 0.0371 REMARK 3 S31: 0.3594 S32: -0.0335 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3038 47.0429 25.9947 REMARK 3 T TENSOR REMARK 3 T11: 0.1876 T22: 0.2296 REMARK 3 T33: 0.0107 T12: -0.0035 REMARK 3 T13: -0.0111 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.1055 L22: 1.4033 REMARK 3 L33: 0.1954 L12: 0.0741 REMARK 3 L13: 0.2898 L23: -0.3849 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: 0.0800 S13: 0.0172 REMARK 3 S21: -0.2059 S22: -0.1170 S23: -0.0871 REMARK 3 S31: 0.0874 S32: 0.0782 S33: 0.0298 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8279 31.3349 30.9429 REMARK 3 T TENSOR REMARK 3 T11: 0.4656 T22: 0.3777 REMARK 3 T33: 0.3404 T12: 0.0874 REMARK 3 T13: 0.0006 T23: 0.2204 REMARK 3 L TENSOR REMARK 3 L11: 0.0650 L22: 1.9134 REMARK 3 L33: 4.3519 L12: -0.2336 REMARK 3 L13: -0.4052 L23: 2.8538 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.1313 S13: 0.0686 REMARK 3 S21: -0.0478 S22: -0.2610 S23: 0.2798 REMARK 3 S31: -0.0156 S32: -0.5295 S33: 0.2555 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 398 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8846 31.4160 27.0502 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.2594 REMARK 3 T33: 0.0687 T12: 0.0753 REMARK 3 T13: -0.0396 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 1.9206 L22: 1.3200 REMARK 3 L33: 0.4075 L12: -0.7459 REMARK 3 L13: 0.6944 L23: -0.6354 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: 0.3972 S13: -0.0623 REMARK 3 S21: -0.1767 S22: -0.1233 S23: 0.1770 REMARK 3 S31: 0.1141 S32: 0.1112 S33: -0.0442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 55.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3SYS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 400 0.2 M CALCIUM CHLORIDE 0.1 REMARK 280 M TRIS PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -14 REMARK 465 ASN A -13 REMARK 465 VAL A -12 REMARK 465 ARG A -11 REMARK 465 LEU A -10 REMARK 465 GLN A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 LEU A -1 REMARK 465 GLU A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 ALA A 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 85 ND2 ASN A 330 6555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 238 N ASP A 238 CA 0.129 REMARK 500 ASP A 238 CB ASP A 238 CG 0.198 REMARK 500 ASN A 330 CB ASN A 330 CG 0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 238 OD1 - CG - OD2 ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP A 238 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 367 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 67 89.75 -167.85 REMARK 500 SER A 102 -120.03 59.23 REMARK 500 MET A 114 84.48 -162.00 REMARK 500 ASP A 142 -7.80 80.34 REMARK 500 ASN A 170 8.45 50.30 REMARK 500 ALA A 176 154.59 179.93 REMARK 500 LEU A 206 -69.80 -140.75 REMARK 500 ILE A 220 -50.79 -124.96 REMARK 500 ASN A 221 -165.32 -115.71 REMARK 500 ARG A 236 -138.65 -147.22 REMARK 500 LYS A 242 -0.47 -54.84 REMARK 500 ASP A 247 87.73 -153.63 REMARK 500 GLN A 260 -122.68 64.32 REMARK 500 GLU A 284 -145.13 -123.90 REMARK 500 TRP A 292 -138.98 73.23 REMARK 500 ASN A 330 54.81 35.99 REMARK 500 SER A 356 165.18 85.40 REMARK 500 LEU A 359 39.60 -98.21 REMARK 500 ASN A 361 26.90 83.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 289 ASP A 290 142.90 REMARK 500 VAL A 354 GLN A 355 148.98 REMARK 500 REMARK 500 REMARK: NULL DBREF1 5DL6 A 1 398 UNP A0A0E4HLL9_ACIBA DBREF2 5DL6 A A0A0E4HLL9 9 406 SEQADV 5DL6 ALA A -14 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 ASN A -13 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 VAL A -12 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 ARG A -11 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 LEU A -10 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 GLN A -9 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 HIS A -8 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 HIS A -7 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 HIS A -6 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 HIS A -5 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 HIS A -4 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 HIS A -3 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 HIS A -2 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 LEU A -1 UNP A0A0E4HLL EXPRESSION TAG SEQADV 5DL6 GLU A 0 UNP A0A0E4HLL EXPRESSION TAG SEQRES 1 A 413 ALA ASN VAL ARG LEU GLN HIS HIS HIS HIS HIS HIS HIS SEQRES 2 A 413 LEU GLU GLY SER PHE ILE ASP ASN SER SER VAL GLU LEU SEQRES 3 A 413 THR THR ARG ASN PHE TYR PHE ASP ARG ASP TYR GLN GLU SEQRES 4 A 413 GLN SER ALA TYR PRO ALA ALA LYS ASP TRP THR GLN GLY SEQRES 5 A 413 PHE ILE LEU LYS ALA ASN SER GLY TYR THR GLU GLY THR SEQRES 6 A 413 ILE GLY PHE GLY LEU ASP VAL LEU ALA THR ALA GLY PHE SEQRES 7 A 413 LYS LEU ASP ALA ASP ALA GLU HIS GLY GLY THR GLY ASN SEQRES 8 A 413 LEU PRO ARG ASP THR ARG THR ASN GLU PRO ALA ASP SER SEQRES 9 A 413 TYR GLY GLU ILE GLY VAL THR ALA LYS ALA LYS MET SER SEQRES 10 A 413 GLN THR GLU LEU ARG ILE GLY THR LEU MET PRO MET ASN SEQRES 11 A 413 PRO VAL LEU VAL ALA SER PRO ALA ARG LEU LEU PRO GLN SEQRES 12 A 413 THR TYR ARG GLY ILE SER LEU THR SER LYS ASP ILE LYS SEQRES 13 A 413 ASP PHE ASP LEU GLN ALA ALA TYR LEU ASP LYS VAL ASN SEQRES 14 A 413 HIS ARG ASP SER THR ASN TYR GLU LYS ILE LYS ILE SER SEQRES 15 A 413 GLY VAL ASN GLY ARG PHE LYS GLY ALA GLU THR ASP GLY SEQRES 16 A 413 LEU TYR TYR LEU GLY GLY ASN TYR GLN PHE ASN PRO ALA SEQRES 17 A 413 LEU LYS LEU THR ALA PHE TYR MET ASP VAL ASP ASP LEU SEQRES 18 A 413 TYR ASN GLN THR MET VAL GLY ALA LEU HIS GLN TYR LYS SEQRES 19 A 413 ILE ASN ASP THR THR ASN PHE SER SER GLN LEU ARG TYR SEQRES 20 A 413 TYR ARG SER ARG ASP ASP GLY GLN ALA LYS ALA GLY LEU SEQRES 21 A 413 VAL ASP ASN ASP LEU TYR HIS ALA HIS PHE GLU LEU LYS SEQRES 22 A 413 HIS GLN ASN HIS LYS PHE ILE PHE GLY THR PHE GLN HIS SEQRES 23 A 413 HIS GLY ASP THR ALA PHE PRO TYR LEU THR GLY GLY GLU SEQRES 24 A 413 THR GLY LEU LEU ILE ASP THR TRP PRO GLY GLU PHE LEU SEQRES 25 A 413 ASN PRO LYS GLU LYS ALA TYR SER PHE ARG TYR GLU TYR SEQRES 26 A 413 ASP PHE LYS GLU TYR VAL PRO GLY LEU CYS PHE MET THR SEQRES 27 A 413 ARG TYR THR THR GLY HIS ASN ILE TYR ALA PRO ASN LEU SEQRES 28 A 413 GLY GLY THR ASN LEU LYS GLU ARG GLU THR ASP PHE ASP SEQRES 29 A 413 LEU GLY TYR THR VAL GLN SER GLY TRP LEU LYS ASN LEU SEQRES 30 A 413 GLY LEU ARG ALA ARG TYR ALA ILE TYR ASP ASN ASN MET SEQRES 31 A 413 LEU SER THR ALA ASN ILE LYS PRO VAL ASN GLU THR ARG SEQRES 32 A 413 ILE ASN ILE ASP TYR THR TRP LYS PHE LYS HELIX 1 AA1 GLY A 1 ASN A 6 1 6 HELIX 2 AA2 ASP A 68 GLY A 72 5 5 HELIX 3 AA3 GLY A 168 ARG A 172 5 5 SHEET 1 AA120 TYR A 161 LYS A 163 0 SHEET 2 AA120 PHE A 143 ASN A 154 -1 N VAL A 153 O GLU A 162 SHEET 3 AA120 LEU A 181 ASN A 191 -1 O LEU A 181 N LEU A 150 SHEET 4 AA120 LEU A 194 VAL A 203 -1 O LEU A 196 N TYR A 188 SHEET 5 AA120 TYR A 207 LYS A 219 -1 O LEU A 215 N LYS A 195 SHEET 6 AA120 THR A 224 SER A 235 -1 O TYR A 232 N VAL A 212 SHEET 7 AA120 ASN A 248 HIS A 259 -1 O LYS A 258 N ASN A 225 SHEET 8 AA120 HIS A 262 HIS A 272 -1 O PHE A 264 N LEU A 257 SHEET 9 AA120 LYS A 302 ASP A 311 -1 O ARG A 307 N ILE A 265 SHEET 10 AA120 LEU A 319 ALA A 333 -1 O TYR A 325 N PHE A 306 SHEET 11 AA120 GLY A 338 VAL A 354 -1 O GLU A 343 N GLY A 328 SHEET 12 AA120 LEU A 362 ASN A 373 -1 O LEU A 364 N TYR A 352 SHEET 13 AA120 VAL A 384 LYS A 398 -1 O ASP A 392 N GLY A 363 SHEET 14 AA120 SER A 8 ASP A 21 -1 N THR A 13 O TYR A 393 SHEET 15 AA120 ALA A 31 ASN A 43 -1 O GLY A 37 N ARG A 14 SHEET 16 AA120 GLY A 52 ASP A 66 -1 O ALA A 59 N LEU A 40 SHEET 17 AA120 SER A 89 MET A 101 -1 O THR A 96 N ASP A 56 SHEET 18 AA120 THR A 104 LEU A 111 -1 O ILE A 108 N ALA A 97 SHEET 19 AA120 THR A 129 SER A 137 -1 O TYR A 130 N LEU A 111 SHEET 20 AA120 PHE A 143 ASN A 154 -1 O TYR A 149 N ILE A 133 CRYST1 150.169 150.169 105.224 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006659 0.003845 0.000000 0.00000 SCALE2 0.000000 0.007689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009504 0.00000