HEADER HYDROLASE/TRANSLATION 09-SEP-15 5DMR TITLE CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF MOUSE ERF1 IN COMPLEX WITH TITLE 2 RNASE H DOMAIN OF RT OF MOLONEY MURINE LEUKEMIA VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H P80; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNASE H DOMAIN, UNP RESIDUES 1159-1330; COMPND 5 SYNONYM: RT; COMPND 6 EC: 3.1.26.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: C-TERMINAL RESIDUES 276-437; COMPND 12 SYNONYM: ERF1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOLONEY MURINE LEUKEMIA VIRUS (ISOLATE SOURCE 3 SHINNICK); SOURCE 4 ORGANISM_COMMON: MOMLV; SOURCE 5 ORGANISM_TAXID: 928306; SOURCE 6 STRAIN: ISOLATE SHINNICK; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: ETF1; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ERF1, RT, COMPLEX, HYDROLASE-TRANSLATION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.TANG,H.SONG REVDAT 3 08-NOV-23 5DMR 1 REMARK REVDAT 2 04-OCT-17 5DMR 1 REMARK REVDAT 1 06-JUL-16 5DMR 0 JRNL AUTH X.TANG,Y.ZHU,S.L.BAKER,M.W.BOWLER,B.J.CHEN,C.CHEN,J.R.HOGG, JRNL AUTH 2 S.P.GOFF,H.SONG JRNL TITL STRUCTURAL BASIS OF SUPPRESSION OF HOST TRANSLATION JRNL TITL 2 TERMINATION BY MOLONEY MURINE LEUKEMIA VIRUS JRNL REF NAT COMMUN V. 7 12070 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27329342 JRNL DOI 10.1038/NCOMMS12070 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 431 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 614 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.5080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2041 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.403 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.318 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.158 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2074 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2014 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2794 ; 1.577 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4636 ; 0.986 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 8.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;38.729 ;24.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;17.455 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.372 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2299 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 452 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1034 ; 5.463 ; 7.181 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1033 ; 5.464 ; 7.177 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1282 ; 8.166 ;10.742 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1283 ; 8.163 ;10.746 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1039 ; 5.897 ; 7.870 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1040 ; 5.894 ; 7.872 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1512 ; 9.406 ;11.524 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2232 ;12.444 ;56.229 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2231 ;12.443 ;56.224 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8469 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2HB5 AND 1DT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 18 % AMMONIUM REMARK 280 DIHYDROGEN PHOSPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.81500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.93100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.81500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.93100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 500 REMARK 465 GLU A 501 REMARK 465 ALA A 502 REMARK 465 HIS A 503 REMARK 465 GLY A 504 REMARK 465 THR A 505 REMARK 465 ARG A 506 REMARK 465 GLU A 531 REMARK 465 GLY A 532 REMARK 465 GLN A 533 REMARK 465 ILE A 597 REMARK 465 TYR A 598 REMARK 465 ARG A 599 REMARK 465 ARG A 600 REMARK 465 ARG A 601 REMARK 465 GLY A 602 REMARK 465 LEU A 603 REMARK 465 LEU A 604 REMARK 465 THR A 605 REMARK 465 SER A 606 REMARK 465 GLU A 607 REMARK 465 GLY A 608 REMARK 465 LYS A 609 REMARK 465 GLY A 637 REMARK 465 HIS A 638 REMARK 465 GLN A 639 REMARK 465 LYS A 640 REMARK 465 GLY A 641 REMARK 465 THR A 667 REMARK 465 SER A 668 REMARK 465 THR A 669 REMARK 465 LEU A 670 REMARK 465 LEU A 671 REMARK 465 SER B 276 REMARK 465 ASN B 277 REMARK 465 VAL B 278 REMARK 465 LYS B 279 REMARK 465 PHE B 280 REMARK 465 PRO B 348 REMARK 465 GLU B 349 REMARK 465 GLN B 350 REMARK 465 GLU B 351 REMARK 465 LYS B 352 REMARK 465 ASP B 353 REMARK 465 LYS B 354 REMARK 465 SER B 355 REMARK 465 HIS B 356 REMARK 465 PHE B 357 REMARK 465 THR B 358 REMARK 465 ASP B 359 REMARK 465 LYS B 360 REMARK 465 GLU B 361 REMARK 465 THR B 362 REMARK 465 GLY B 363 REMARK 465 GLN B 364 REMARK 465 GLU B 365 REMARK 465 HIS B 366 REMARK 465 GLY B 421 REMARK 465 MET B 422 REMARK 465 GLU B 423 REMARK 465 TYR B 424 REMARK 465 GLN B 425 REMARK 465 GLY B 426 REMARK 465 GLY B 427 REMARK 465 ASP B 428 REMARK 465 ASP B 429 REMARK 465 GLU B 430 REMARK 465 PHE B 431 REMARK 465 PHE B 432 REMARK 465 ASP B 433 REMARK 465 LEU B 434 REMARK 465 ASP B 435 REMARK 465 ASP B 436 REMARK 465 TYR B 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 615 OD1 ASP A 615 2658 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 529 173.29 -54.78 REMARK 500 PRO A 553 154.44 -40.69 REMARK 500 ALA A 554 106.86 -33.33 REMARK 500 PRO A 665 -110.68 -14.92 REMARK 500 LYS B 300 53.74 -94.14 REMARK 500 GLN B 336 -81.09 -34.90 REMARK 500 GLU B 339 43.94 -90.76 REMARK 500 GLU B 370 139.97 -170.80 REMARK 500 ALA B 387 90.70 84.19 REMARK 500 PHE B 419 80.47 56.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 282 GLU B 283 145.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DMQ RELATED DB: PDB DBREF 5DMR A 500 671 UNP P03355 POL_MLVMS 1159 1330 DBREF 5DMR B 276 437 UNP Q8BWY3 ERF1_MOUSE 276 437 SEQRES 1 A 172 ALA GLU ALA HIS GLY THR ARG PRO ASP LEU THR ASP GLN SEQRES 2 A 172 PRO LEU PRO ASP ALA ASP HIS THR TRP TYR THR ASP GLY SEQRES 3 A 172 SER SER LEU LEU GLN GLU GLY GLN ARG LYS ALA GLY ALA SEQRES 4 A 172 ALA VAL THR THR GLU THR GLU VAL ILE TRP ALA LYS ALA SEQRES 5 A 172 LEU PRO ALA GLY THR SER ALA GLN ARG ALA GLU LEU ILE SEQRES 6 A 172 ALA LEU THR GLN ALA LEU LYS MET ALA GLU GLY LYS LYS SEQRES 7 A 172 LEU ASN VAL TYR THR ASP SER ARG TYR ALA PHE ALA THR SEQRES 8 A 172 ALA HIS ILE HIS GLY GLU ILE TYR ARG ARG ARG GLY LEU SEQRES 9 A 172 LEU THR SER GLU GLY LYS GLU ILE LYS ASN LYS ASP GLU SEQRES 10 A 172 ILE LEU ALA LEU LEU LYS ALA LEU PHE LEU PRO LYS ARG SEQRES 11 A 172 LEU SER ILE ILE HIS CYS PRO GLY HIS GLN LYS GLY HIS SEQRES 12 A 172 SER ALA GLU ALA ARG GLY ASN ARG MET ALA ASP GLN ALA SEQRES 13 A 172 ALA ARG LYS ALA ALA ILE THR GLU THR PRO ASP THR SER SEQRES 14 A 172 THR LEU LEU SEQRES 1 B 162 SER ASN VAL LYS PHE ILE GLN GLU LYS LYS LEU ILE GLY SEQRES 2 B 162 ARG TYR PHE ASP GLU ILE SER GLN ASP THR GLY LYS TYR SEQRES 3 B 162 CYS PHE GLY VAL GLU ASP THR LEU LYS ALA LEU GLU MET SEQRES 4 B 162 GLY ALA VAL GLU ILE LEU ILE VAL TYR GLU ASN LEU ASP SEQRES 5 B 162 ILE MET ARG TYR VAL LEU HIS CYS GLN GLY THR GLU GLU SEQRES 6 B 162 GLU LYS ILE LEU TYR LEU THR PRO GLU GLN GLU LYS ASP SEQRES 7 B 162 LYS SER HIS PHE THR ASP LYS GLU THR GLY GLN GLU HIS SEQRES 8 B 162 GLU LEU ILE GLU SER MET PRO LEU LEU GLU TRP PHE ALA SEQRES 9 B 162 ASN ASN TYR LYS LYS PHE GLY ALA THR LEU GLU ILE VAL SEQRES 10 B 162 THR ASP LYS SER GLN GLU GLY SER GLN PHE VAL LYS GLY SEQRES 11 B 162 PHE GLY GLY ILE GLY GLY ILE LEU ARG TYR ARG VAL ASP SEQRES 12 B 162 PHE GLN GLY MET GLU TYR GLN GLY GLY ASP ASP GLU PHE SEQRES 13 B 162 PHE ASP LEU ASP ASP TYR FORMUL 3 HOH *4(H2 O) HELIX 1 AA1 SER A 557 ALA A 573 1 17 HELIX 2 AA2 SER A 584 ILE A 593 1 10 HELIX 3 AA3 ASN A 613 LEU A 624 1 12 HELIX 4 AA4 SER A 643 THR A 662 1 20 HELIX 5 AA5 GLN B 282 GLN B 296 1 15 HELIX 6 AA6 GLY B 304 MET B 314 1 11 HELIX 7 AA7 LEU B 374 TYR B 382 1 9 HELIX 8 AA8 LYS B 383 PHE B 385 5 3 HELIX 9 AA9 SER B 396 GLY B 407 1 12 SHEET 1 AA1 3 SER A 527 LEU A 528 0 SHEET 2 AA1 3 LYS A 535 THR A 541 -1 O LYS A 535 N LEU A 528 SHEET 3 AA1 3 VAL A 546 ALA A 551 -1 O TRP A 548 N VAL A 540 SHEET 1 AA2 5 SER A 527 LEU A 528 0 SHEET 2 AA2 5 LYS A 535 THR A 541 -1 O LYS A 535 N LEU A 528 SHEET 3 AA2 5 HIS A 519 ASP A 524 -1 N ASP A 524 O ALA A 539 SHEET 4 AA2 5 LYS A 577 THR A 582 1 O TYR A 581 N THR A 523 SHEET 5 AA2 5 ARG A 629 HIS A 634 1 O ARG A 629 N LEU A 578 SHEET 1 AA3 4 TYR B 301 PHE B 303 0 SHEET 2 AA3 4 ILE B 409 LEU B 413 -1 O GLY B 411 N CYS B 302 SHEET 3 AA3 4 VAL B 317 TYR B 323 -1 N ILE B 321 O GLY B 410 SHEET 4 AA3 4 THR B 388 VAL B 392 1 O GLU B 390 N LEU B 320 SHEET 1 AA4 3 GLU B 341 LEU B 346 0 SHEET 2 AA4 3 MET B 329 HIS B 334 -1 N TYR B 331 O LEU B 344 SHEET 3 AA4 3 LEU B 368 PRO B 373 -1 O MET B 372 N ARG B 330 CISPEP 1 GLY B 386 ALA B 387 0 -12.43 CRYST1 89.630 63.862 60.431 90.00 96.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011157 0.000000 0.001351 0.00000 SCALE2 0.000000 0.015659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016669 0.00000