data_5DNJ # _entry.id 5DNJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5DNJ pdb_00005dnj 10.2210/pdb5dnj/pdb WWPDB D_1000213484 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-02-24 2 'Structure model' 1 1 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_entry_details 5 2 'Structure model' pdbx_modification_feature 6 2 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DNJ _pdbx_database_status.recvd_initial_deposition_date 2015-09-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Namgoong, S.' 1 'Han, Y.H.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first 14626 _citation.page_last 14626 _citation.title ;Structural basis for recognition of Emi2 by Polo-like kinase 1 and development of peptidomimetics blocking oocyte maturation and fertilization. ; _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/srep14626 _citation.pdbx_database_id_PubMed 26459104 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jia, J.L.' 1 ? primary 'Han, Y.H.' 2 ? primary 'Kim, H.C.' 3 ? primary 'Ahn, M.' 4 ? primary 'Kwon, J.W.' 5 ? primary 'Luo, Y.' 6 ? primary 'Gunasekaran, P.' 7 ? primary 'Lee, S.J.' 8 ? primary 'Lee, K.S.' 9 ? primary 'Bang, J.K.' 10 ? primary 'Kim, N.H.' 11 ? primary 'Namgoong, S.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serine/threonine-protein kinase PLK1' 27242.980 1 2.7.11.21 ? 'UNP RESIDUES 367-603' ? 2 polymer syn 'peptide 707-56A-SER-TPO-NH2' 893.738 1 ? ? ? ? 3 water nat water 18.015 11 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Polo-like kinase 1,PLK-1,Serine/threonine-protein kinase 13,STPK13' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NEAIECHLSDLLQQLTSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYN DGDSLQYIERDGTESYLTVSSHPNSLMKKITLLNYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLS NGTVQINFFQDHTKLILCPLMAAVTYINEKRDFQTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLKAS ; ;NEAIECHLSDLLQQLTSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYN DGDSLQYIERDGTESYLTVSSHPNSLMKKITLLNYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLS NGTVQINFFQDHTKLILCPLMAAVTYINEKRDFQTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLKAS ; A ? 2 'polypeptide(L)' no yes '(707)(56A)S(TPO)(NH2)' XHSTX B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 GLU n 1 3 ALA n 1 4 ILE n 1 5 GLU n 1 6 CYS n 1 7 HIS n 1 8 LEU n 1 9 SER n 1 10 ASP n 1 11 LEU n 1 12 LEU n 1 13 GLN n 1 14 GLN n 1 15 LEU n 1 16 THR n 1 17 SER n 1 18 VAL n 1 19 ASN n 1 20 ALA n 1 21 SER n 1 22 LYS n 1 23 PRO n 1 24 SER n 1 25 GLU n 1 26 ARG n 1 27 GLY n 1 28 LEU n 1 29 VAL n 1 30 ARG n 1 31 GLN n 1 32 GLU n 1 33 GLU n 1 34 ALA n 1 35 GLU n 1 36 ASP n 1 37 PRO n 1 38 ALA n 1 39 CYS n 1 40 ILE n 1 41 PRO n 1 42 ILE n 1 43 PHE n 1 44 TRP n 1 45 VAL n 1 46 SER n 1 47 LYS n 1 48 TRP n 1 49 VAL n 1 50 ASP n 1 51 TYR n 1 52 SER n 1 53 ASP n 1 54 LYS n 1 55 TYR n 1 56 GLY n 1 57 LEU n 1 58 GLY n 1 59 TYR n 1 60 GLN n 1 61 LEU n 1 62 CYS n 1 63 ASP n 1 64 ASN n 1 65 SER n 1 66 VAL n 1 67 GLY n 1 68 VAL n 1 69 LEU n 1 70 PHE n 1 71 ASN n 1 72 ASP n 1 73 SER n 1 74 THR n 1 75 ARG n 1 76 LEU n 1 77 ILE n 1 78 LEU n 1 79 TYR n 1 80 ASN n 1 81 ASP n 1 82 GLY n 1 83 ASP n 1 84 SER n 1 85 LEU n 1 86 GLN n 1 87 TYR n 1 88 ILE n 1 89 GLU n 1 90 ARG n 1 91 ASP n 1 92 GLY n 1 93 THR n 1 94 GLU n 1 95 SER n 1 96 TYR n 1 97 LEU n 1 98 THR n 1 99 VAL n 1 100 SER n 1 101 SER n 1 102 HIS n 1 103 PRO n 1 104 ASN n 1 105 SER n 1 106 LEU n 1 107 MET n 1 108 LYS n 1 109 LYS n 1 110 ILE n 1 111 THR n 1 112 LEU n 1 113 LEU n 1 114 ASN n 1 115 TYR n 1 116 PHE n 1 117 ARG n 1 118 ASN n 1 119 TYR n 1 120 MET n 1 121 SER n 1 122 GLU n 1 123 HIS n 1 124 LEU n 1 125 LEU n 1 126 LYS n 1 127 ALA n 1 128 GLY n 1 129 ALA n 1 130 ASN n 1 131 ILE n 1 132 THR n 1 133 PRO n 1 134 ARG n 1 135 GLU n 1 136 GLY n 1 137 ASP n 1 138 GLU n 1 139 LEU n 1 140 ALA n 1 141 ARG n 1 142 LEU n 1 143 PRO n 1 144 TYR n 1 145 LEU n 1 146 ARG n 1 147 THR n 1 148 TRP n 1 149 PHE n 1 150 ARG n 1 151 THR n 1 152 ARG n 1 153 SER n 1 154 ALA n 1 155 ILE n 1 156 ILE n 1 157 LEU n 1 158 HIS n 1 159 LEU n 1 160 SER n 1 161 ASN n 1 162 GLY n 1 163 THR n 1 164 VAL n 1 165 GLN n 1 166 ILE n 1 167 ASN n 1 168 PHE n 1 169 PHE n 1 170 GLN n 1 171 ASP n 1 172 HIS n 1 173 THR n 1 174 LYS n 1 175 LEU n 1 176 ILE n 1 177 LEU n 1 178 CYS n 1 179 PRO n 1 180 LEU n 1 181 MET n 1 182 ALA n 1 183 ALA n 1 184 VAL n 1 185 THR n 1 186 TYR n 1 187 ILE n 1 188 ASN n 1 189 GLU n 1 190 LYS n 1 191 ARG n 1 192 ASP n 1 193 PHE n 1 194 GLN n 1 195 THR n 1 196 TYR n 1 197 ARG n 1 198 LEU n 1 199 SER n 1 200 LEU n 1 201 LEU n 1 202 GLU n 1 203 GLU n 1 204 TYR n 1 205 GLY n 1 206 CYS n 1 207 CYS n 1 208 LYS n 1 209 GLU n 1 210 LEU n 1 211 ALA n 1 212 SER n 1 213 ARG n 1 214 LEU n 1 215 ARG n 1 216 TYR n 1 217 ALA n 1 218 ARG n 1 219 THR n 1 220 MET n 1 221 VAL n 1 222 ASP n 1 223 LYS n 1 224 LEU n 1 225 LEU n 1 226 SER n 1 227 SER n 1 228 ARG n 1 229 SER n 1 230 ALA n 1 231 SER n 1 232 ASN n 1 233 ARG n 1 234 LEU n 1 235 LYS n 1 236 ALA n 1 237 SER n 2 1 707 n 2 2 56A n 2 3 SER n 2 4 TPO n 2 5 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 237 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Plk1, Plk' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 5 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 56A 'L-peptide linking' n '3-(8-phenyloctyl)-L-histidine' ? 'C20 H29 N3 O2' 343.463 707 non-polymer . 'N-(3-bromo-4-methoxybenzoyl)-beta-alanine' ? 'C11 H12 Br N O4' 302.121 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TPO 'L-peptide linking' n PHOSPHOTHREONINE PHOSPHONOTHREONINE 'C4 H10 N O6 P' 199.099 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 367 ? ? ? A . n A 1 2 GLU 2 368 ? ? ? A . n A 1 3 ALA 3 369 ? ? ? A . n A 1 4 ILE 4 370 ? ? ? A . n A 1 5 GLU 5 371 ? ? ? A . n A 1 6 CYS 6 372 ? ? ? A . n A 1 7 HIS 7 373 373 HIS HIS A . n A 1 8 LEU 8 374 374 LEU LEU A . n A 1 9 SER 9 375 375 SER SER A . n A 1 10 ASP 10 376 376 ASP ASP A . n A 1 11 LEU 11 377 377 LEU LEU A . n A 1 12 LEU 12 378 378 LEU LEU A . n A 1 13 GLN 13 379 379 GLN GLN A . n A 1 14 GLN 14 380 380 GLN GLN A . n A 1 15 LEU 15 381 381 LEU LEU A . n A 1 16 THR 16 382 382 THR THR A . n A 1 17 SER 17 383 383 SER SER A . n A 1 18 VAL 18 384 384 VAL VAL A . n A 1 19 ASN 19 385 385 ASN ASN A . n A 1 20 ALA 20 386 386 ALA ALA A . n A 1 21 SER 21 387 387 SER SER A . n A 1 22 LYS 22 388 388 LYS LYS A . n A 1 23 PRO 23 389 389 PRO PRO A . n A 1 24 SER 24 390 390 SER SER A . n A 1 25 GLU 25 391 391 GLU GLU A . n A 1 26 ARG 26 392 392 ARG ARG A . n A 1 27 GLY 27 393 393 GLY GLY A . n A 1 28 LEU 28 394 394 LEU LEU A . n A 1 29 VAL 29 395 395 VAL VAL A . n A 1 30 ARG 30 396 396 ARG ARG A . n A 1 31 GLN 31 397 397 GLN GLN A . n A 1 32 GLU 32 398 398 GLU GLU A . n A 1 33 GLU 33 399 399 GLU GLU A . n A 1 34 ALA 34 400 400 ALA ALA A . n A 1 35 GLU 35 401 401 GLU GLU A . n A 1 36 ASP 36 402 402 ASP ASP A . n A 1 37 PRO 37 403 403 PRO PRO A . n A 1 38 ALA 38 404 404 ALA ALA A . n A 1 39 CYS 39 405 405 CYS CYS A . n A 1 40 ILE 40 406 406 ILE ILE A . n A 1 41 PRO 41 407 407 PRO PRO A . n A 1 42 ILE 42 408 408 ILE ILE A . n A 1 43 PHE 43 409 409 PHE PHE A . n A 1 44 TRP 44 410 410 TRP TRP A . n A 1 45 VAL 45 411 411 VAL VAL A . n A 1 46 SER 46 412 412 SER SER A . n A 1 47 LYS 47 413 413 LYS LYS A . n A 1 48 TRP 48 414 414 TRP TRP A . n A 1 49 VAL 49 415 415 VAL VAL A . n A 1 50 ASP 50 416 416 ASP ASP A . n A 1 51 TYR 51 417 417 TYR TYR A . n A 1 52 SER 52 418 418 SER SER A . n A 1 53 ASP 53 419 419 ASP ASP A . n A 1 54 LYS 54 420 420 LYS LYS A . n A 1 55 TYR 55 421 421 TYR TYR A . n A 1 56 GLY 56 422 422 GLY GLY A . n A 1 57 LEU 57 423 423 LEU LEU A . n A 1 58 GLY 58 424 424 GLY GLY A . n A 1 59 TYR 59 425 425 TYR TYR A . n A 1 60 GLN 60 426 426 GLN GLN A . n A 1 61 LEU 61 427 427 LEU LEU A . n A 1 62 CYS 62 428 428 CYS CYS A . n A 1 63 ASP 63 429 429 ASP ASP A . n A 1 64 ASN 64 430 430 ASN ASN A . n A 1 65 SER 65 431 431 SER SER A . n A 1 66 VAL 66 432 432 VAL VAL A . n A 1 67 GLY 67 433 433 GLY GLY A . n A 1 68 VAL 68 434 434 VAL VAL A . n A 1 69 LEU 69 435 435 LEU LEU A . n A 1 70 PHE 70 436 436 PHE PHE A . n A 1 71 ASN 71 437 437 ASN ASN A . n A 1 72 ASP 72 438 438 ASP ASP A . n A 1 73 SER 73 439 439 SER SER A . n A 1 74 THR 74 440 440 THR THR A . n A 1 75 ARG 75 441 441 ARG ARG A . n A 1 76 LEU 76 442 442 LEU LEU A . n A 1 77 ILE 77 443 443 ILE ILE A . n A 1 78 LEU 78 444 444 LEU LEU A . n A 1 79 TYR 79 445 445 TYR TYR A . n A 1 80 ASN 80 446 446 ASN ASN A . n A 1 81 ASP 81 447 447 ASP ASP A . n A 1 82 GLY 82 448 448 GLY GLY A . n A 1 83 ASP 83 449 449 ASP ASP A . n A 1 84 SER 84 450 450 SER SER A . n A 1 85 LEU 85 451 451 LEU LEU A . n A 1 86 GLN 86 452 452 GLN GLN A . n A 1 87 TYR 87 453 453 TYR TYR A . n A 1 88 ILE 88 454 454 ILE ILE A . n A 1 89 GLU 89 455 455 GLU GLU A . n A 1 90 ARG 90 456 456 ARG ARG A . n A 1 91 ASP 91 457 457 ASP ASP A . n A 1 92 GLY 92 458 458 GLY GLY A . n A 1 93 THR 93 459 459 THR THR A . n A 1 94 GLU 94 460 460 GLU GLU A . n A 1 95 SER 95 461 461 SER SER A . n A 1 96 TYR 96 462 462 TYR TYR A . n A 1 97 LEU 97 463 463 LEU LEU A . n A 1 98 THR 98 464 464 THR THR A . n A 1 99 VAL 99 465 465 VAL VAL A . n A 1 100 SER 100 466 466 SER SER A . n A 1 101 SER 101 467 467 SER SER A . n A 1 102 HIS 102 468 468 HIS HIS A . n A 1 103 PRO 103 469 469 PRO PRO A . n A 1 104 ASN 104 470 470 ASN ASN A . n A 1 105 SER 105 471 471 SER SER A . n A 1 106 LEU 106 472 472 LEU LEU A . n A 1 107 MET 107 473 473 MET MET A . n A 1 108 LYS 108 474 474 LYS LYS A . n A 1 109 LYS 109 475 475 LYS LYS A . n A 1 110 ILE 110 476 476 ILE ILE A . n A 1 111 THR 111 477 477 THR THR A . n A 1 112 LEU 112 478 478 LEU LEU A . n A 1 113 LEU 113 479 479 LEU LEU A . n A 1 114 ASN 114 480 480 ASN ASN A . n A 1 115 TYR 115 481 481 TYR TYR A . n A 1 116 PHE 116 482 482 PHE PHE A . n A 1 117 ARG 117 483 483 ARG ARG A . n A 1 118 ASN 118 484 484 ASN ASN A . n A 1 119 TYR 119 485 485 TYR TYR A . n A 1 120 MET 120 486 486 MET MET A . n A 1 121 SER 121 487 487 SER SER A . n A 1 122 GLU 122 488 488 GLU GLU A . n A 1 123 HIS 123 489 489 HIS HIS A . n A 1 124 LEU 124 490 490 LEU LEU A . n A 1 125 LEU 125 491 491 LEU LEU A . n A 1 126 LYS 126 492 492 LYS LYS A . n A 1 127 ALA 127 493 493 ALA ALA A . n A 1 128 GLY 128 494 494 GLY GLY A . n A 1 129 ALA 129 495 495 ALA ALA A . n A 1 130 ASN 130 496 496 ASN ASN A . n A 1 131 ILE 131 497 497 ILE ILE A . n A 1 132 THR 132 498 498 THR THR A . n A 1 133 PRO 133 499 499 PRO PRO A . n A 1 134 ARG 134 500 500 ARG ARG A . n A 1 135 GLU 135 501 501 GLU GLU A . n A 1 136 GLY 136 502 ? ? ? A . n A 1 137 ASP 137 503 ? ? ? A . n A 1 138 GLU 138 504 ? ? ? A . n A 1 139 LEU 139 505 ? ? ? A . n A 1 140 ALA 140 506 ? ? ? A . n A 1 141 ARG 141 507 ? ? ? A . n A 1 142 LEU 142 508 508 LEU LEU A . n A 1 143 PRO 143 509 509 PRO PRO A . n A 1 144 TYR 144 510 510 TYR TYR A . n A 1 145 LEU 145 511 511 LEU LEU A . n A 1 146 ARG 146 512 512 ARG ARG A . n A 1 147 THR 147 513 513 THR THR A . n A 1 148 TRP 148 514 514 TRP TRP A . n A 1 149 PHE 149 515 515 PHE PHE A . n A 1 150 ARG 150 516 516 ARG ARG A . n A 1 151 THR 151 517 517 THR THR A . n A 1 152 ARG 152 518 518 ARG ARG A . n A 1 153 SER 153 519 519 SER SER A . n A 1 154 ALA 154 520 520 ALA ALA A . n A 1 155 ILE 155 521 521 ILE ILE A . n A 1 156 ILE 156 522 522 ILE ILE A . n A 1 157 LEU 157 523 523 LEU LEU A . n A 1 158 HIS 158 524 524 HIS HIS A . n A 1 159 LEU 159 525 525 LEU LEU A . n A 1 160 SER 160 526 526 SER SER A . n A 1 161 ASN 161 527 527 ASN ASN A . n A 1 162 GLY 162 528 528 GLY GLY A . n A 1 163 THR 163 529 529 THR THR A . n A 1 164 VAL 164 530 530 VAL VAL A . n A 1 165 GLN 165 531 531 GLN GLN A . n A 1 166 ILE 166 532 532 ILE ILE A . n A 1 167 ASN 167 533 533 ASN ASN A . n A 1 168 PHE 168 534 534 PHE PHE A . n A 1 169 PHE 169 535 535 PHE PHE A . n A 1 170 GLN 170 536 536 GLN GLN A . n A 1 171 ASP 171 537 537 ASP ASP A . n A 1 172 HIS 172 538 538 HIS HIS A . n A 1 173 THR 173 539 539 THR THR A . n A 1 174 LYS 174 540 540 LYS LYS A . n A 1 175 LEU 175 541 541 LEU LEU A . n A 1 176 ILE 176 542 542 ILE ILE A . n A 1 177 LEU 177 543 543 LEU LEU A . n A 1 178 CYS 178 544 544 CYS CYS A . n A 1 179 PRO 179 545 545 PRO PRO A . n A 1 180 LEU 180 546 546 LEU LEU A . n A 1 181 MET 181 547 547 MET MET A . n A 1 182 ALA 182 548 548 ALA ALA A . n A 1 183 ALA 183 549 549 ALA ALA A . n A 1 184 VAL 184 550 550 VAL VAL A . n A 1 185 THR 185 551 551 THR THR A . n A 1 186 TYR 186 552 552 TYR TYR A . n A 1 187 ILE 187 553 553 ILE ILE A . n A 1 188 ASN 188 554 554 ASN ASN A . n A 1 189 GLU 189 555 555 GLU GLU A . n A 1 190 LYS 190 556 556 LYS LYS A . n A 1 191 ARG 191 557 557 ARG ARG A . n A 1 192 ASP 192 558 558 ASP ASP A . n A 1 193 PHE 193 559 559 PHE PHE A . n A 1 194 GLN 194 560 560 GLN GLN A . n A 1 195 THR 195 561 561 THR THR A . n A 1 196 TYR 196 562 562 TYR TYR A . n A 1 197 ARG 197 563 563 ARG ARG A . n A 1 198 LEU 198 564 564 LEU LEU A . n A 1 199 SER 199 565 565 SER SER A . n A 1 200 LEU 200 566 566 LEU LEU A . n A 1 201 LEU 201 567 567 LEU LEU A . n A 1 202 GLU 202 568 568 GLU GLU A . n A 1 203 GLU 203 569 569 GLU GLU A . n A 1 204 TYR 204 570 570 TYR TYR A . n A 1 205 GLY 205 571 571 GLY GLY A . n A 1 206 CYS 206 572 572 CYS CYS A . n A 1 207 CYS 207 573 573 CYS CYS A . n A 1 208 LYS 208 574 574 LYS LYS A . n A 1 209 GLU 209 575 575 GLU GLU A . n A 1 210 LEU 210 576 576 LEU LEU A . n A 1 211 ALA 211 577 577 ALA ALA A . n A 1 212 SER 212 578 578 SER SER A . n A 1 213 ARG 213 579 579 ARG ARG A . n A 1 214 LEU 214 580 580 LEU LEU A . n A 1 215 ARG 215 581 581 ARG ARG A . n A 1 216 TYR 216 582 582 TYR TYR A . n A 1 217 ALA 217 583 583 ALA ALA A . n A 1 218 ARG 218 584 584 ARG ARG A . n A 1 219 THR 219 585 585 THR THR A . n A 1 220 MET 220 586 586 MET MET A . n A 1 221 VAL 221 587 587 VAL VAL A . n A 1 222 ASP 222 588 588 ASP ASP A . n A 1 223 LYS 223 589 589 LYS LYS A . n A 1 224 LEU 224 590 590 LEU LEU A . n A 1 225 LEU 225 591 591 LEU LEU A . n A 1 226 SER 226 592 592 SER SER A . n A 1 227 SER 227 593 593 SER SER A . n A 1 228 ARG 228 594 ? ? ? A . n A 1 229 SER 229 595 ? ? ? A . n A 1 230 ALA 230 596 ? ? ? A . n A 1 231 SER 231 597 ? ? ? A . n A 1 232 ASN 232 598 ? ? ? A . n A 1 233 ARG 233 599 ? ? ? A . n A 1 234 LEU 234 600 ? ? ? A . n A 1 235 LYS 235 601 ? ? ? A . n A 1 236 ALA 236 602 ? ? ? A . n A 1 237 SER 237 603 ? ? ? A . n B 2 1 707 1 1 1 707 702 B . n B 2 2 56A 2 2 2 56A 702 B . n B 2 3 SER 3 3 3 SER 702 B . n B 2 4 TPO 4 4 4 TPO 702 B . n B 2 5 NH2 5 5 5 NH2 702 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 701 6 HOH HOH A . C 3 HOH 2 702 2 HOH HOH A . C 3 HOH 3 703 4 HOH HOH A . C 3 HOH 4 704 9 HOH HOH A . C 3 HOH 5 705 1 HOH HOH A . C 3 HOH 6 706 8 HOH HOH A . C 3 HOH 7 707 11 HOH HOH A . C 3 HOH 8 708 3 HOH HOH A . C 3 HOH 9 709 10 HOH HOH A . C 3 HOH 10 710 5 HOH HOH A . C 3 HOH 11 711 7 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 388 ? CE ? A LYS 22 CE 2 1 Y 1 A LYS 388 ? NZ ? A LYS 22 NZ 3 1 Y 1 A ARG 396 ? CZ ? A ARG 30 CZ 4 1 Y 1 A ARG 396 ? NH1 ? A ARG 30 NH1 5 1 Y 1 A ARG 396 ? NH2 ? A ARG 30 NH2 6 1 Y 1 A ASP 419 ? CG ? A ASP 53 CG 7 1 Y 1 A ASP 419 ? OD1 ? A ASP 53 OD1 8 1 Y 1 A ASP 419 ? OD2 ? A ASP 53 OD2 9 1 Y 1 A ARG 456 ? CG ? A ARG 90 CG 10 1 Y 1 A ARG 456 ? CD ? A ARG 90 CD 11 1 Y 1 A ARG 456 ? NE ? A ARG 90 NE 12 1 Y 1 A ARG 456 ? CZ ? A ARG 90 CZ 13 1 Y 1 A ARG 456 ? NH1 ? A ARG 90 NH1 14 1 Y 1 A ARG 456 ? NH2 ? A ARG 90 NH2 15 1 Y 1 A MET 473 ? SD ? A MET 107 SD 16 1 Y 1 A MET 473 ? CE ? A MET 107 CE 17 1 Y 1 A ARG 516 ? NE ? A ARG 150 NE 18 1 Y 1 A ARG 516 ? CZ ? A ARG 150 CZ 19 1 Y 1 A ARG 516 ? NH1 ? A ARG 150 NH1 20 1 Y 1 A ARG 516 ? NH2 ? A ARG 150 NH2 21 1 Y 1 A ARG 518 ? NE ? A ARG 152 NE 22 1 Y 1 A ARG 518 ? CZ ? A ARG 152 CZ 23 1 Y 1 A ARG 518 ? NH1 ? A ARG 152 NH1 24 1 Y 1 A ARG 518 ? NH2 ? A ARG 152 NH2 25 1 Y 1 A LYS 556 ? CD ? A LYS 190 CD 26 1 Y 1 A LYS 556 ? CE ? A LYS 190 CE 27 1 Y 1 A LYS 556 ? NZ ? A LYS 190 NZ 28 1 Y 1 A PHE 559 ? CG ? A PHE 193 CG 29 1 Y 1 A PHE 559 ? CD1 ? A PHE 193 CD1 30 1 Y 1 A PHE 559 ? CD2 ? A PHE 193 CD2 31 1 Y 1 A PHE 559 ? CE1 ? A PHE 193 CE1 32 1 Y 1 A PHE 559 ? CE2 ? A PHE 193 CE2 33 1 Y 1 A PHE 559 ? CZ ? A PHE 193 CZ 34 1 Y 1 A LYS 574 ? CD ? A LYS 208 CD 35 1 Y 1 A LYS 574 ? CE ? A LYS 208 CE 36 1 Y 1 A LYS 574 ? NZ ? A LYS 208 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0107 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5DNJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 57.149 _cell.length_a_esd ? _cell.length_b 59.989 _cell.length_b_esd ? _cell.length_c 67.040 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DNJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 36.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 278 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '28% 2-propanol, 3% PEG 200, 0.1 M Bis-Tris (pH 6.5)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-07-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'DCM Si (111) Crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PAL/PLS BEAMLINE 7A (6B, 6C1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline '7A (6B, 6C1)' _diffrn_source.pdbx_synchrotron_site PAL/PLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DNJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 44.7 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9156 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 90.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] -3.25 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] 0.90 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] 2.35 _refine.B_iso_max ? _refine.B_iso_mean 32.458 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.878 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DNJ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.30 _refine.ls_d_res_low 44.70 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9156 _refine.ls_number_reflns_R_free 466 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 90.48 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.19983 _refine.ls_R_factor_R_free 0.27693 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.19603 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.444 _refine.pdbx_overall_ESU_R_Free 0.296 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 8.572 _refine.overall_SU_ML 0.205 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1769 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 1780 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 44.70 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.020 1806 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 1688 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.820 1.992 2442 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 2.252 3.007 3872 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.155 5.000 214 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 34.474 24.051 79 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.014 15.000 301 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 13.301 15.000 10 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.156 0.200 275 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 2001 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 418 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 2.395 3.058 870 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.386 3.057 868 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.902 4.574 1078 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.902 4.574 1079 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.525 3.539 936 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.523 3.539 937 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.677 5.144 1365 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.739 24.873 1979 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 7.734 24.879 1979 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.305 _refine_ls_shell.d_res_low 2.364 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_R_work 566 _refine_ls_shell.percent_reflns_obs 76.82 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.348 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.264 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5DNJ _struct.title 'Mouse Polo-box domain and Peptide analog 702' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DNJ _struct_keywords.text 'PLK1, Emi2, Protein Kinase, meiosis, TRANSFERASE-TRANSFERASE INHIBITOR complex' _struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP PLK1_MOUSE Q07832 ? 1 ;NEAIECHLSDLLQQLTSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYN DGDSLQYIERDGTESYLTVSSHPNSLMKKITLLNYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLS NGTVQINFFQDHTKLILCPLMAAVTYINEKRDFQTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLKAS ; 367 2 PDB 5DNJ 5DNJ ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5DNJ A 1 ? 237 ? Q07832 367 ? 603 ? 367 603 2 2 5DNJ B 1 ? 5 ? 5DNJ 1 ? 5 ? 1 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1280 ? 1 MORE -6 ? 1 'SSA (A^2)' 10470 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 7 ? SER A 21 ? HIS A 373 SER A 387 1 ? 15 HELX_P HELX_P2 AA2 GLN A 31 ? GLU A 35 ? GLN A 397 GLU A 401 5 ? 5 HELX_P HELX_P3 AA3 ASP A 36 ? ILE A 40 ? ASP A 402 ILE A 406 5 ? 5 HELX_P HELX_P4 AA4 PRO A 103 ? SER A 105 ? PRO A 469 SER A 471 5 ? 3 HELX_P HELX_P5 AA5 LEU A 106 ? LEU A 124 ? LEU A 472 LEU A 490 1 ? 19 HELX_P HELX_P6 AA6 LEU A 198 ? GLY A 205 ? LEU A 564 GLY A 571 1 ? 8 HELX_P HELX_P7 AA7 CYS A 207 ? SER A 226 ? CYS A 573 SER A 592 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B 707 1 C1 ? ? ? 1_555 B 56A 2 N ? ? B 707 1 B 56A 2 1_555 ? ? ? ? ? ? ? 1.262 ? ? covale2 covale both ? B 56A 2 C ? ? ? 1_555 B SER 3 N ? ? B 56A 2 B SER 3 1_555 ? ? ? ? ? ? ? 1.300 ? ? covale3 covale both ? B SER 3 C ? ? ? 1_555 B TPO 4 N ? ? B SER 3 B TPO 4 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale4 covale both ? B TPO 4 C ? ? ? 1_555 B NH2 5 N ? ? B TPO 4 B NH2 5 1_555 ? ? ? ? ? ? ? 1.280 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 TPO B 4 ? . . . . TPO B 4 ? 1_555 . . . . . . . THR 1 TPO Phosphorylation 'Named protein modification' 2 707 B 1 ? . . . . 707 B 1 ? 1_555 . . . . . . . ? 1 707 None 'Non-standard residue' 3 56A B 2 ? . . . . 56A B 2 ? 1_555 . . . . . . . HIS 1 56A None 'Non-standard residue' 4 NH2 B 5 ? TPO B 4 ? NH2 B 5 ? 1_555 TPO B 4 ? 1_555 . . TPO 42 NH2 None 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 45 ? ASP A 50 ? VAL A 411 ASP A 416 AA1 2 GLY A 56 ? LEU A 61 ? GLY A 422 LEU A 427 AA1 3 VAL A 66 ? PHE A 70 ? VAL A 432 PHE A 436 AA1 4 ARG A 75 ? LEU A 78 ? ARG A 441 LEU A 444 AA1 5 SER A 84 ? ILE A 88 ? SER A 450 ILE A 454 AA1 6 GLU A 94 ? THR A 98 ? GLU A 460 THR A 464 AA2 1 LEU A 145 ? ARG A 150 ? LEU A 511 ARG A 516 AA2 2 ALA A 154 ? LEU A 159 ? ALA A 520 LEU A 525 AA2 3 VAL A 164 ? PHE A 168 ? VAL A 530 PHE A 534 AA2 4 LYS A 174 ? CYS A 178 ? LYS A 540 CYS A 544 AA2 5 ALA A 183 ? ILE A 187 ? ALA A 549 ILE A 553 AA2 6 PHE A 193 ? ARG A 197 ? PHE A 559 ARG A 563 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 49 ? N VAL A 415 O GLY A 58 ? O GLY A 424 AA1 2 3 N TYR A 59 ? N TYR A 425 O GLY A 67 ? O GLY A 433 AA1 3 4 N VAL A 66 ? N VAL A 432 O LEU A 78 ? O LEU A 444 AA1 4 5 N ARG A 75 ? N ARG A 441 O ILE A 88 ? O ILE A 454 AA1 5 6 N TYR A 87 ? N TYR A 453 O SER A 95 ? O SER A 461 AA2 1 2 N PHE A 149 ? N PHE A 515 O ILE A 156 ? O ILE A 522 AA2 2 3 N LEU A 157 ? N LEU A 523 O GLN A 165 ? O GLN A 531 AA2 3 4 N VAL A 164 ? N VAL A 530 O LEU A 177 ? O LEU A 543 AA2 4 5 N CYS A 178 ? N CYS A 544 O ALA A 183 ? O ALA A 549 AA2 5 6 N VAL A 184 ? N VAL A 550 O TYR A 196 ? O TYR A 562 # _pdbx_entry_details.entry_id 5DNJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 508 ? ? CB A LEU 508 ? ? CG A LEU 508 ? ? 129.14 115.30 13.84 2.30 N 2 1 CB A LEU 591 ? ? CG A LEU 591 ? ? CD1 A LEU 591 ? ? 122.88 111.00 11.88 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 420 ? ? -120.79 -50.75 2 1 ASP A 449 ? ? -134.78 -41.56 3 1 SER A 592 ? ? -98.14 53.24 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id 56A _pdbx_validate_main_chain_plane.auth_asym_id B _pdbx_validate_main_chain_plane.auth_seq_id 2 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -17.40 # _pdbx_molecule_features.prd_id PRD_002222 _pdbx_molecule_features.name 'peptide inhibitor' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class 'Enzyme inhibitor' _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_002222 _pdbx_molecule.asym_id B # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 367 ? A ASN 1 2 1 Y 1 A GLU 368 ? A GLU 2 3 1 Y 1 A ALA 369 ? A ALA 3 4 1 Y 1 A ILE 370 ? A ILE 4 5 1 Y 1 A GLU 371 ? A GLU 5 6 1 Y 1 A CYS 372 ? A CYS 6 7 1 Y 1 A GLY 502 ? A GLY 136 8 1 Y 1 A ASP 503 ? A ASP 137 9 1 Y 1 A GLU 504 ? A GLU 138 10 1 Y 1 A LEU 505 ? A LEU 139 11 1 Y 1 A ALA 506 ? A ALA 140 12 1 Y 1 A ARG 507 ? A ARG 141 13 1 Y 1 A ARG 594 ? A ARG 228 14 1 Y 1 A SER 595 ? A SER 229 15 1 Y 1 A ALA 596 ? A ALA 230 16 1 Y 1 A SER 597 ? A SER 231 17 1 Y 1 A ASN 598 ? A ASN 232 18 1 Y 1 A ARG 599 ? A ARG 233 19 1 Y 1 A LEU 600 ? A LEU 234 20 1 Y 1 A LYS 601 ? A LYS 235 21 1 Y 1 A ALA 602 ? A ALA 236 22 1 Y 1 A SER 603 ? A SER 237 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 56A C C N N 1 56A N N N N 2 56A O O N N 3 56A CA C N S 4 56A CB C N N 5 56A CG C Y N 6 56A C27 C N N 7 56A C28 C N N 8 56A C29 C N N 9 56A C30 C N N 10 56A C31 C N N 11 56A C32 C N N 12 56A C33 C N N 13 56A C34 C N N 14 56A C35 C Y N 15 56A C36 C Y N 16 56A C37 C Y N 17 56A C38 C Y N 18 56A C39 C Y N 19 56A C40 C Y N 20 56A ND1 N Y N 21 56A CD2 C Y N 22 56A CE1 C Y N 23 56A NE2 N Y N 24 56A OXT O N N 25 56A H2 H N N 26 56A H H N N 27 56A HA H N N 28 56A HB H N N 29 56A HBA H N N 30 56A H27 H N N 31 56A H27A H N N 32 56A H28 H N N 33 56A H28A H N N 34 56A H29 H N N 35 56A H29A H N N 36 56A H30 H N N 37 56A H30A H N N 38 56A H31 H N N 39 56A H31A H N N 40 56A H32 H N N 41 56A H32A H N N 42 56A H33 H N N 43 56A H33A H N N 44 56A H34 H N N 45 56A H34A H N N 46 56A H36 H N N 47 56A H37 H N N 48 56A H38 H N N 49 56A H39 H N N 50 56A H40 H N N 51 56A HD2 H N N 52 56A HE1 H N N 53 56A HXT H N N 54 707 O1 O N N 55 707 C1 C N N 56 707 C2 C N N 57 707 C3 C N N 58 707 N1 N N N 59 707 C4 C N N 60 707 O2 O N N 61 707 C5 C Y N 62 707 C6 C Y N 63 707 C7 C Y N 64 707 BR BR N N 65 707 C8 C Y N 66 707 O3 O N N 67 707 C9 C N N 68 707 C10 C Y N 69 707 C11 C Y N 70 707 H2 H N N 71 707 H3 H N N 72 707 H4 H N N 73 707 H5 H N N 74 707 H6 H N N 75 707 H7 H N N 76 707 H8 H N N 77 707 H9 H N N 78 707 H10 H N N 79 707 H11 H N N 80 707 H12 H N N 81 707 O4 O N N 82 707 H1 H N N 83 ALA N N N N 84 ALA CA C N S 85 ALA C C N N 86 ALA O O N N 87 ALA CB C N N 88 ALA OXT O N N 89 ALA H H N N 90 ALA H2 H N N 91 ALA HA H N N 92 ALA HB1 H N N 93 ALA HB2 H N N 94 ALA HB3 H N N 95 ALA HXT H N N 96 ARG N N N N 97 ARG CA C N S 98 ARG C C N N 99 ARG O O N N 100 ARG CB C N N 101 ARG CG C N N 102 ARG CD C N N 103 ARG NE N N N 104 ARG CZ C N N 105 ARG NH1 N N N 106 ARG NH2 N N N 107 ARG OXT O N N 108 ARG H H N N 109 ARG H2 H N N 110 ARG HA H N N 111 ARG HB2 H N N 112 ARG HB3 H N N 113 ARG HG2 H N N 114 ARG HG3 H N N 115 ARG HD2 H N N 116 ARG HD3 H N N 117 ARG HE H N N 118 ARG HH11 H N N 119 ARG HH12 H N N 120 ARG HH21 H N N 121 ARG HH22 H N N 122 ARG HXT H N N 123 ASN N N N N 124 ASN CA C N S 125 ASN C C N N 126 ASN O O N N 127 ASN CB C N N 128 ASN CG C N N 129 ASN OD1 O N N 130 ASN ND2 N N N 131 ASN OXT O N N 132 ASN H H N N 133 ASN H2 H N N 134 ASN HA H N N 135 ASN HB2 H N N 136 ASN HB3 H N N 137 ASN HD21 H N N 138 ASN HD22 H N N 139 ASN HXT H N N 140 ASP N N N N 141 ASP CA C N S 142 ASP C C N N 143 ASP O O N N 144 ASP CB C N N 145 ASP CG C N N 146 ASP OD1 O N N 147 ASP OD2 O N N 148 ASP OXT O N N 149 ASP H H N N 150 ASP H2 H N N 151 ASP HA H N N 152 ASP HB2 H N N 153 ASP HB3 H N N 154 ASP HD2 H N N 155 ASP HXT H N N 156 CYS N N N N 157 CYS CA C N R 158 CYS C C N N 159 CYS O O N N 160 CYS CB C N N 161 CYS SG S N N 162 CYS OXT O N N 163 CYS H H N N 164 CYS H2 H N N 165 CYS HA H N N 166 CYS HB2 H N N 167 CYS HB3 H N N 168 CYS HG H N N 169 CYS HXT H N N 170 GLN N N N N 171 GLN CA C N S 172 GLN C C N N 173 GLN O O N N 174 GLN CB C N N 175 GLN CG C N N 176 GLN CD C N N 177 GLN OE1 O N N 178 GLN NE2 N N N 179 GLN OXT O N N 180 GLN H H N N 181 GLN H2 H N N 182 GLN HA H N N 183 GLN HB2 H N N 184 GLN HB3 H N N 185 GLN HG2 H N N 186 GLN HG3 H N N 187 GLN HE21 H N N 188 GLN HE22 H N N 189 GLN HXT H N N 190 GLU N N N N 191 GLU CA C N S 192 GLU C C N N 193 GLU O O N N 194 GLU CB C N N 195 GLU CG C N N 196 GLU CD C N N 197 GLU OE1 O N N 198 GLU OE2 O N N 199 GLU OXT O N N 200 GLU H H N N 201 GLU H2 H N N 202 GLU HA H N N 203 GLU HB2 H N N 204 GLU HB3 H N N 205 GLU HG2 H N N 206 GLU HG3 H N N 207 GLU HE2 H N N 208 GLU HXT H N N 209 GLY N N N N 210 GLY CA C N N 211 GLY C C N N 212 GLY O O N N 213 GLY OXT O N N 214 GLY H H N N 215 GLY H2 H N N 216 GLY HA2 H N N 217 GLY HA3 H N N 218 GLY HXT H N N 219 HIS N N N N 220 HIS CA C N S 221 HIS C C N N 222 HIS O O N N 223 HIS CB C N N 224 HIS CG C Y N 225 HIS ND1 N Y N 226 HIS CD2 C Y N 227 HIS CE1 C Y N 228 HIS NE2 N Y N 229 HIS OXT O N N 230 HIS H H N N 231 HIS H2 H N N 232 HIS HA H N N 233 HIS HB2 H N N 234 HIS HB3 H N N 235 HIS HD1 H N N 236 HIS HD2 H N N 237 HIS HE1 H N N 238 HIS HE2 H N N 239 HIS HXT H N N 240 HOH O O N N 241 HOH H1 H N N 242 HOH H2 H N N 243 ILE N N N N 244 ILE CA C N S 245 ILE C C N N 246 ILE O O N N 247 ILE CB C N S 248 ILE CG1 C N N 249 ILE CG2 C N N 250 ILE CD1 C N N 251 ILE OXT O N N 252 ILE H H N N 253 ILE H2 H N N 254 ILE HA H N N 255 ILE HB H N N 256 ILE HG12 H N N 257 ILE HG13 H N N 258 ILE HG21 H N N 259 ILE HG22 H N N 260 ILE HG23 H N N 261 ILE HD11 H N N 262 ILE HD12 H N N 263 ILE HD13 H N N 264 ILE HXT H N N 265 LEU N N N N 266 LEU CA C N S 267 LEU C C N N 268 LEU O O N N 269 LEU CB C N N 270 LEU CG C N N 271 LEU CD1 C N N 272 LEU CD2 C N N 273 LEU OXT O N N 274 LEU H H N N 275 LEU H2 H N N 276 LEU HA H N N 277 LEU HB2 H N N 278 LEU HB3 H N N 279 LEU HG H N N 280 LEU HD11 H N N 281 LEU HD12 H N N 282 LEU HD13 H N N 283 LEU HD21 H N N 284 LEU HD22 H N N 285 LEU HD23 H N N 286 LEU HXT H N N 287 LYS N N N N 288 LYS CA C N S 289 LYS C C N N 290 LYS O O N N 291 LYS CB C N N 292 LYS CG C N N 293 LYS CD C N N 294 LYS CE C N N 295 LYS NZ N N N 296 LYS OXT O N N 297 LYS H H N N 298 LYS H2 H N N 299 LYS HA H N N 300 LYS HB2 H N N 301 LYS HB3 H N N 302 LYS HG2 H N N 303 LYS HG3 H N N 304 LYS HD2 H N N 305 LYS HD3 H N N 306 LYS HE2 H N N 307 LYS HE3 H N N 308 LYS HZ1 H N N 309 LYS HZ2 H N N 310 LYS HZ3 H N N 311 LYS HXT H N N 312 MET N N N N 313 MET CA C N S 314 MET C C N N 315 MET O O N N 316 MET CB C N N 317 MET CG C N N 318 MET SD S N N 319 MET CE C N N 320 MET OXT O N N 321 MET H H N N 322 MET H2 H N N 323 MET HA H N N 324 MET HB2 H N N 325 MET HB3 H N N 326 MET HG2 H N N 327 MET HG3 H N N 328 MET HE1 H N N 329 MET HE2 H N N 330 MET HE3 H N N 331 MET HXT H N N 332 NH2 N N N N 333 NH2 HN1 H N N 334 NH2 HN2 H N N 335 PHE N N N N 336 PHE CA C N S 337 PHE C C N N 338 PHE O O N N 339 PHE CB C N N 340 PHE CG C Y N 341 PHE CD1 C Y N 342 PHE CD2 C Y N 343 PHE CE1 C Y N 344 PHE CE2 C Y N 345 PHE CZ C Y N 346 PHE OXT O N N 347 PHE H H N N 348 PHE H2 H N N 349 PHE HA H N N 350 PHE HB2 H N N 351 PHE HB3 H N N 352 PHE HD1 H N N 353 PHE HD2 H N N 354 PHE HE1 H N N 355 PHE HE2 H N N 356 PHE HZ H N N 357 PHE HXT H N N 358 PRO N N N N 359 PRO CA C N S 360 PRO C C N N 361 PRO O O N N 362 PRO CB C N N 363 PRO CG C N N 364 PRO CD C N N 365 PRO OXT O N N 366 PRO H H N N 367 PRO HA H N N 368 PRO HB2 H N N 369 PRO HB3 H N N 370 PRO HG2 H N N 371 PRO HG3 H N N 372 PRO HD2 H N N 373 PRO HD3 H N N 374 PRO HXT H N N 375 SER N N N N 376 SER CA C N S 377 SER C C N N 378 SER O O N N 379 SER CB C N N 380 SER OG O N N 381 SER OXT O N N 382 SER H H N N 383 SER H2 H N N 384 SER HA H N N 385 SER HB2 H N N 386 SER HB3 H N N 387 SER HG H N N 388 SER HXT H N N 389 THR N N N N 390 THR CA C N S 391 THR C C N N 392 THR O O N N 393 THR CB C N R 394 THR OG1 O N N 395 THR CG2 C N N 396 THR OXT O N N 397 THR H H N N 398 THR H2 H N N 399 THR HA H N N 400 THR HB H N N 401 THR HG1 H N N 402 THR HG21 H N N 403 THR HG22 H N N 404 THR HG23 H N N 405 THR HXT H N N 406 TPO N N N N 407 TPO CA C N S 408 TPO CB C N R 409 TPO CG2 C N N 410 TPO OG1 O N N 411 TPO P P N N 412 TPO O1P O N N 413 TPO O2P O N N 414 TPO O3P O N N 415 TPO C C N N 416 TPO O O N N 417 TPO OXT O N N 418 TPO H H N N 419 TPO H2 H N N 420 TPO HA H N N 421 TPO HB H N N 422 TPO HG21 H N N 423 TPO HG22 H N N 424 TPO HG23 H N N 425 TPO HOP2 H N N 426 TPO HOP3 H N N 427 TPO HXT H N N 428 TRP N N N N 429 TRP CA C N S 430 TRP C C N N 431 TRP O O N N 432 TRP CB C N N 433 TRP CG C Y N 434 TRP CD1 C Y N 435 TRP CD2 C Y N 436 TRP NE1 N Y N 437 TRP CE2 C Y N 438 TRP CE3 C Y N 439 TRP CZ2 C Y N 440 TRP CZ3 C Y N 441 TRP CH2 C Y N 442 TRP OXT O N N 443 TRP H H N N 444 TRP H2 H N N 445 TRP HA H N N 446 TRP HB2 H N N 447 TRP HB3 H N N 448 TRP HD1 H N N 449 TRP HE1 H N N 450 TRP HE3 H N N 451 TRP HZ2 H N N 452 TRP HZ3 H N N 453 TRP HH2 H N N 454 TRP HXT H N N 455 TYR N N N N 456 TYR CA C N S 457 TYR C C N N 458 TYR O O N N 459 TYR CB C N N 460 TYR CG C Y N 461 TYR CD1 C Y N 462 TYR CD2 C Y N 463 TYR CE1 C Y N 464 TYR CE2 C Y N 465 TYR CZ C Y N 466 TYR OH O N N 467 TYR OXT O N N 468 TYR H H N N 469 TYR H2 H N N 470 TYR HA H N N 471 TYR HB2 H N N 472 TYR HB3 H N N 473 TYR HD1 H N N 474 TYR HD2 H N N 475 TYR HE1 H N N 476 TYR HE2 H N N 477 TYR HH H N N 478 TYR HXT H N N 479 VAL N N N N 480 VAL CA C N S 481 VAL C C N N 482 VAL O O N N 483 VAL CB C N N 484 VAL CG1 C N N 485 VAL CG2 C N N 486 VAL OXT O N N 487 VAL H H N N 488 VAL H2 H N N 489 VAL HA H N N 490 VAL HB H N N 491 VAL HG11 H N N 492 VAL HG12 H N N 493 VAL HG13 H N N 494 VAL HG21 H N N 495 VAL HG22 H N N 496 VAL HG23 H N N 497 VAL HXT H N N 498 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 56A O C doub N N 1 56A OXT C sing N N 2 56A C CA sing N N 3 56A CA N sing N N 4 56A N H2 sing N N 5 56A N H sing N N 6 56A CA CB sing N N 7 56A CA HA sing N N 8 56A CG CB sing N N 9 56A CB HB sing N N 10 56A CB HBA sing N N 11 56A CD2 CG doub Y N 12 56A CG ND1 sing Y N 13 56A ND1 C27 sing N N 14 56A C27 C28 sing N N 15 56A C27 H27 sing N N 16 56A C27 H27A sing N N 17 56A C28 C29 sing N N 18 56A C28 H28 sing N N 19 56A C28 H28A sing N N 20 56A C29 C30 sing N N 21 56A C29 H29 sing N N 22 56A C29 H29A sing N N 23 56A C30 C31 sing N N 24 56A C30 H30 sing N N 25 56A C30 H30A sing N N 26 56A C31 C32 sing N N 27 56A C31 H31 sing N N 28 56A C31 H31A sing N N 29 56A C33 C32 sing N N 30 56A C32 H32 sing N N 31 56A C32 H32A sing N N 32 56A C33 C34 sing N N 33 56A C33 H33 sing N N 34 56A C33 H33A sing N N 35 56A C34 C35 sing N N 36 56A C34 H34 sing N N 37 56A C34 H34A sing N N 38 56A C35 C40 doub Y N 39 56A C35 C36 sing Y N 40 56A C36 C37 doub Y N 41 56A C36 H36 sing N N 42 56A C37 C38 sing Y N 43 56A C37 H37 sing N N 44 56A C39 C38 doub Y N 45 56A C38 H38 sing N N 46 56A C40 C39 sing Y N 47 56A C39 H39 sing N N 48 56A C40 H40 sing N N 49 56A CE1 ND1 sing Y N 50 56A NE2 CD2 sing Y N 51 56A CD2 HD2 sing N N 52 56A NE2 CE1 doub Y N 53 56A CE1 HE1 sing N N 54 56A OXT HXT sing N N 55 707 C3 N1 sing N N 56 707 C3 C2 sing N N 57 707 N1 C4 sing N N 58 707 O2 C4 doub N N 59 707 C2 C1 sing N N 60 707 C4 C5 sing N N 61 707 C11 C5 doub Y N 62 707 C11 C10 sing Y N 63 707 C5 C6 sing Y N 64 707 C1 O1 doub N N 65 707 C10 C8 doub Y N 66 707 C6 C7 doub Y N 67 707 C7 C8 sing Y N 68 707 C7 BR sing N N 69 707 C8 O3 sing N N 70 707 O3 C9 sing N N 71 707 C2 H2 sing N N 72 707 C2 H3 sing N N 73 707 C3 H4 sing N N 74 707 C3 H5 sing N N 75 707 N1 H6 sing N N 76 707 C6 H7 sing N N 77 707 C9 H8 sing N N 78 707 C9 H9 sing N N 79 707 C9 H10 sing N N 80 707 C10 H11 sing N N 81 707 C11 H12 sing N N 82 707 C1 O4 sing N N 83 707 O4 H1 sing N N 84 ALA N CA sing N N 85 ALA N H sing N N 86 ALA N H2 sing N N 87 ALA CA C sing N N 88 ALA CA CB sing N N 89 ALA CA HA sing N N 90 ALA C O doub N N 91 ALA C OXT sing N N 92 ALA CB HB1 sing N N 93 ALA CB HB2 sing N N 94 ALA CB HB3 sing N N 95 ALA OXT HXT sing N N 96 ARG N CA sing N N 97 ARG N H sing N N 98 ARG N H2 sing N N 99 ARG CA C sing N N 100 ARG CA CB sing N N 101 ARG CA HA sing N N 102 ARG C O doub N N 103 ARG C OXT sing N N 104 ARG CB CG sing N N 105 ARG CB HB2 sing N N 106 ARG CB HB3 sing N N 107 ARG CG CD sing N N 108 ARG CG HG2 sing N N 109 ARG CG HG3 sing N N 110 ARG CD NE sing N N 111 ARG CD HD2 sing N N 112 ARG CD HD3 sing N N 113 ARG NE CZ sing N N 114 ARG NE HE sing N N 115 ARG CZ NH1 sing N N 116 ARG CZ NH2 doub N N 117 ARG NH1 HH11 sing N N 118 ARG NH1 HH12 sing N N 119 ARG NH2 HH21 sing N N 120 ARG NH2 HH22 sing N N 121 ARG OXT HXT sing N N 122 ASN N CA sing N N 123 ASN N H sing N N 124 ASN N H2 sing N N 125 ASN CA C sing N N 126 ASN CA CB sing N N 127 ASN CA HA sing N N 128 ASN C O doub N N 129 ASN C OXT sing N N 130 ASN CB CG sing N N 131 ASN CB HB2 sing N N 132 ASN CB HB3 sing N N 133 ASN CG OD1 doub N N 134 ASN CG ND2 sing N N 135 ASN ND2 HD21 sing N N 136 ASN ND2 HD22 sing N N 137 ASN OXT HXT sing N N 138 ASP N CA sing N N 139 ASP N H sing N N 140 ASP N H2 sing N N 141 ASP CA C sing N N 142 ASP CA CB sing N N 143 ASP CA HA sing N N 144 ASP C O doub N N 145 ASP C OXT sing N N 146 ASP CB CG sing N N 147 ASP CB HB2 sing N N 148 ASP CB HB3 sing N N 149 ASP CG OD1 doub N N 150 ASP CG OD2 sing N N 151 ASP OD2 HD2 sing N N 152 ASP OXT HXT sing N N 153 CYS N CA sing N N 154 CYS N H sing N N 155 CYS N H2 sing N N 156 CYS CA C sing N N 157 CYS CA CB sing N N 158 CYS CA HA sing N N 159 CYS C O doub N N 160 CYS C OXT sing N N 161 CYS CB SG sing N N 162 CYS CB HB2 sing N N 163 CYS CB HB3 sing N N 164 CYS SG HG sing N N 165 CYS OXT HXT sing N N 166 GLN N CA sing N N 167 GLN N H sing N N 168 GLN N H2 sing N N 169 GLN CA C sing N N 170 GLN CA CB sing N N 171 GLN CA HA sing N N 172 GLN C O doub N N 173 GLN C OXT sing N N 174 GLN CB CG sing N N 175 GLN CB HB2 sing N N 176 GLN CB HB3 sing N N 177 GLN CG CD sing N N 178 GLN CG HG2 sing N N 179 GLN CG HG3 sing N N 180 GLN CD OE1 doub N N 181 GLN CD NE2 sing N N 182 GLN NE2 HE21 sing N N 183 GLN NE2 HE22 sing N N 184 GLN OXT HXT sing N N 185 GLU N CA sing N N 186 GLU N H sing N N 187 GLU N H2 sing N N 188 GLU CA C sing N N 189 GLU CA CB sing N N 190 GLU CA HA sing N N 191 GLU C O doub N N 192 GLU C OXT sing N N 193 GLU CB CG sing N N 194 GLU CB HB2 sing N N 195 GLU CB HB3 sing N N 196 GLU CG CD sing N N 197 GLU CG HG2 sing N N 198 GLU CG HG3 sing N N 199 GLU CD OE1 doub N N 200 GLU CD OE2 sing N N 201 GLU OE2 HE2 sing N N 202 GLU OXT HXT sing N N 203 GLY N CA sing N N 204 GLY N H sing N N 205 GLY N H2 sing N N 206 GLY CA C sing N N 207 GLY CA HA2 sing N N 208 GLY CA HA3 sing N N 209 GLY C O doub N N 210 GLY C OXT sing N N 211 GLY OXT HXT sing N N 212 HIS N CA sing N N 213 HIS N H sing N N 214 HIS N H2 sing N N 215 HIS CA C sing N N 216 HIS CA CB sing N N 217 HIS CA HA sing N N 218 HIS C O doub N N 219 HIS C OXT sing N N 220 HIS CB CG sing N N 221 HIS CB HB2 sing N N 222 HIS CB HB3 sing N N 223 HIS CG ND1 sing Y N 224 HIS CG CD2 doub Y N 225 HIS ND1 CE1 doub Y N 226 HIS ND1 HD1 sing N N 227 HIS CD2 NE2 sing Y N 228 HIS CD2 HD2 sing N N 229 HIS CE1 NE2 sing Y N 230 HIS CE1 HE1 sing N N 231 HIS NE2 HE2 sing N N 232 HIS OXT HXT sing N N 233 HOH O H1 sing N N 234 HOH O H2 sing N N 235 ILE N CA sing N N 236 ILE N H sing N N 237 ILE N H2 sing N N 238 ILE CA C sing N N 239 ILE CA CB sing N N 240 ILE CA HA sing N N 241 ILE C O doub N N 242 ILE C OXT sing N N 243 ILE CB CG1 sing N N 244 ILE CB CG2 sing N N 245 ILE CB HB sing N N 246 ILE CG1 CD1 sing N N 247 ILE CG1 HG12 sing N N 248 ILE CG1 HG13 sing N N 249 ILE CG2 HG21 sing N N 250 ILE CG2 HG22 sing N N 251 ILE CG2 HG23 sing N N 252 ILE CD1 HD11 sing N N 253 ILE CD1 HD12 sing N N 254 ILE CD1 HD13 sing N N 255 ILE OXT HXT sing N N 256 LEU N CA sing N N 257 LEU N H sing N N 258 LEU N H2 sing N N 259 LEU CA C sing N N 260 LEU CA CB sing N N 261 LEU CA HA sing N N 262 LEU C O doub N N 263 LEU C OXT sing N N 264 LEU CB CG sing N N 265 LEU CB HB2 sing N N 266 LEU CB HB3 sing N N 267 LEU CG CD1 sing N N 268 LEU CG CD2 sing N N 269 LEU CG HG sing N N 270 LEU CD1 HD11 sing N N 271 LEU CD1 HD12 sing N N 272 LEU CD1 HD13 sing N N 273 LEU CD2 HD21 sing N N 274 LEU CD2 HD22 sing N N 275 LEU CD2 HD23 sing N N 276 LEU OXT HXT sing N N 277 LYS N CA sing N N 278 LYS N H sing N N 279 LYS N H2 sing N N 280 LYS CA C sing N N 281 LYS CA CB sing N N 282 LYS CA HA sing N N 283 LYS C O doub N N 284 LYS C OXT sing N N 285 LYS CB CG sing N N 286 LYS CB HB2 sing N N 287 LYS CB HB3 sing N N 288 LYS CG CD sing N N 289 LYS CG HG2 sing N N 290 LYS CG HG3 sing N N 291 LYS CD CE sing N N 292 LYS CD HD2 sing N N 293 LYS CD HD3 sing N N 294 LYS CE NZ sing N N 295 LYS CE HE2 sing N N 296 LYS CE HE3 sing N N 297 LYS NZ HZ1 sing N N 298 LYS NZ HZ2 sing N N 299 LYS NZ HZ3 sing N N 300 LYS OXT HXT sing N N 301 MET N CA sing N N 302 MET N H sing N N 303 MET N H2 sing N N 304 MET CA C sing N N 305 MET CA CB sing N N 306 MET CA HA sing N N 307 MET C O doub N N 308 MET C OXT sing N N 309 MET CB CG sing N N 310 MET CB HB2 sing N N 311 MET CB HB3 sing N N 312 MET CG SD sing N N 313 MET CG HG2 sing N N 314 MET CG HG3 sing N N 315 MET SD CE sing N N 316 MET CE HE1 sing N N 317 MET CE HE2 sing N N 318 MET CE HE3 sing N N 319 MET OXT HXT sing N N 320 NH2 N HN1 sing N N 321 NH2 N HN2 sing N N 322 PHE N CA sing N N 323 PHE N H sing N N 324 PHE N H2 sing N N 325 PHE CA C sing N N 326 PHE CA CB sing N N 327 PHE CA HA sing N N 328 PHE C O doub N N 329 PHE C OXT sing N N 330 PHE CB CG sing N N 331 PHE CB HB2 sing N N 332 PHE CB HB3 sing N N 333 PHE CG CD1 doub Y N 334 PHE CG CD2 sing Y N 335 PHE CD1 CE1 sing Y N 336 PHE CD1 HD1 sing N N 337 PHE CD2 CE2 doub Y N 338 PHE CD2 HD2 sing N N 339 PHE CE1 CZ doub Y N 340 PHE CE1 HE1 sing N N 341 PHE CE2 CZ sing Y N 342 PHE CE2 HE2 sing N N 343 PHE CZ HZ sing N N 344 PHE OXT HXT sing N N 345 PRO N CA sing N N 346 PRO N CD sing N N 347 PRO N H sing N N 348 PRO CA C sing N N 349 PRO CA CB sing N N 350 PRO CA HA sing N N 351 PRO C O doub N N 352 PRO C OXT sing N N 353 PRO CB CG sing N N 354 PRO CB HB2 sing N N 355 PRO CB HB3 sing N N 356 PRO CG CD sing N N 357 PRO CG HG2 sing N N 358 PRO CG HG3 sing N N 359 PRO CD HD2 sing N N 360 PRO CD HD3 sing N N 361 PRO OXT HXT sing N N 362 SER N CA sing N N 363 SER N H sing N N 364 SER N H2 sing N N 365 SER CA C sing N N 366 SER CA CB sing N N 367 SER CA HA sing N N 368 SER C O doub N N 369 SER C OXT sing N N 370 SER CB OG sing N N 371 SER CB HB2 sing N N 372 SER CB HB3 sing N N 373 SER OG HG sing N N 374 SER OXT HXT sing N N 375 THR N CA sing N N 376 THR N H sing N N 377 THR N H2 sing N N 378 THR CA C sing N N 379 THR CA CB sing N N 380 THR CA HA sing N N 381 THR C O doub N N 382 THR C OXT sing N N 383 THR CB OG1 sing N N 384 THR CB CG2 sing N N 385 THR CB HB sing N N 386 THR OG1 HG1 sing N N 387 THR CG2 HG21 sing N N 388 THR CG2 HG22 sing N N 389 THR CG2 HG23 sing N N 390 THR OXT HXT sing N N 391 TPO N CA sing N N 392 TPO N H sing N N 393 TPO N H2 sing N N 394 TPO CA CB sing N N 395 TPO CA C sing N N 396 TPO CA HA sing N N 397 TPO CB CG2 sing N N 398 TPO CB OG1 sing N N 399 TPO CB HB sing N N 400 TPO CG2 HG21 sing N N 401 TPO CG2 HG22 sing N N 402 TPO CG2 HG23 sing N N 403 TPO OG1 P sing N N 404 TPO P O1P doub N N 405 TPO P O2P sing N N 406 TPO P O3P sing N N 407 TPO O2P HOP2 sing N N 408 TPO O3P HOP3 sing N N 409 TPO C O doub N N 410 TPO C OXT sing N N 411 TPO OXT HXT sing N N 412 TRP N CA sing N N 413 TRP N H sing N N 414 TRP N H2 sing N N 415 TRP CA C sing N N 416 TRP CA CB sing N N 417 TRP CA HA sing N N 418 TRP C O doub N N 419 TRP C OXT sing N N 420 TRP CB CG sing N N 421 TRP CB HB2 sing N N 422 TRP CB HB3 sing N N 423 TRP CG CD1 doub Y N 424 TRP CG CD2 sing Y N 425 TRP CD1 NE1 sing Y N 426 TRP CD1 HD1 sing N N 427 TRP CD2 CE2 doub Y N 428 TRP CD2 CE3 sing Y N 429 TRP NE1 CE2 sing Y N 430 TRP NE1 HE1 sing N N 431 TRP CE2 CZ2 sing Y N 432 TRP CE3 CZ3 doub Y N 433 TRP CE3 HE3 sing N N 434 TRP CZ2 CH2 doub Y N 435 TRP CZ2 HZ2 sing N N 436 TRP CZ3 CH2 sing Y N 437 TRP CZ3 HZ3 sing N N 438 TRP CH2 HH2 sing N N 439 TRP OXT HXT sing N N 440 TYR N CA sing N N 441 TYR N H sing N N 442 TYR N H2 sing N N 443 TYR CA C sing N N 444 TYR CA CB sing N N 445 TYR CA HA sing N N 446 TYR C O doub N N 447 TYR C OXT sing N N 448 TYR CB CG sing N N 449 TYR CB HB2 sing N N 450 TYR CB HB3 sing N N 451 TYR CG CD1 doub Y N 452 TYR CG CD2 sing Y N 453 TYR CD1 CE1 sing Y N 454 TYR CD1 HD1 sing N N 455 TYR CD2 CE2 doub Y N 456 TYR CD2 HD2 sing N N 457 TYR CE1 CZ doub Y N 458 TYR CE1 HE1 sing N N 459 TYR CE2 CZ sing Y N 460 TYR CE2 HE2 sing N N 461 TYR CZ OH sing N N 462 TYR OH HH sing N N 463 TYR OXT HXT sing N N 464 VAL N CA sing N N 465 VAL N H sing N N 466 VAL N H2 sing N N 467 VAL CA C sing N N 468 VAL CA CB sing N N 469 VAL CA HA sing N N 470 VAL C O doub N N 471 VAL C OXT sing N N 472 VAL CB CG1 sing N N 473 VAL CB CG2 sing N N 474 VAL CB HB sing N N 475 VAL CG1 HG11 sing N N 476 VAL CG1 HG12 sing N N 477 VAL CG1 HG13 sing N N 478 VAL CG2 HG21 sing N N 479 VAL CG2 HG22 sing N N 480 VAL CG2 HG23 sing N N 481 VAL OXT HXT sing N N 482 # _atom_sites.entry_id 5DNJ _atom_sites.fract_transf_matrix[1][1] 0.017498 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016670 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014916 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P S # loop_