HEADER RNA BINDING PROTEIN 10-SEP-15 5DNP TITLE CRYSTAL STRUCTURE OF MMI1 YTH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING PROTEIN MMI1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 322-488; COMPND 5 SYNONYM: MEIOTIC MRNA INTERCEPTION PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE 972H-; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972; SOURCE 6 ATCC: 24843; SOURCE 7 GENE: MMI1, SPCC736.12C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RNA BINDING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.WANG,Y.W.ZHU,Y.Y.SHI,J.H.WU REVDAT 2 08-NOV-23 5DNP 1 JRNL REMARK REVDAT 1 06-APR-16 5DNP 0 JRNL AUTH C.Y.WANG,Y.W.ZHU,H.Y.BAO,Y.Y.JIANG,C.XU,J.H.WU,Y.Y.SHI JRNL TITL A NOVEL RNA-BINDING MODE OF THE YTH DOMAIN REVEALS THE JRNL TITL 2 MECHANISM FOR RECOGNITION OF DETERMINANT OF SELECTIVE JRNL TITL 3 REMOVAL BY MMI1 JRNL REF NUCLEIC ACIDS RES. V. 44 969 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26673708 JRNL DOI 10.1093/NAR/GKV1382 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 889 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 1.23000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.417 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2243 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2076 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3025 ; 1.187 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4769 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 6.258 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;37.846 ;23.700 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;14.130 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.837 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2523 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 535 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1114 ; 1.261 ; 2.982 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1113 ; 1.262 ; 2.981 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1389 ; 2.179 ; 4.464 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5DNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13290 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4R3I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES (PH 6.0), 18% (W/V) PEG REMARK 280 2000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.24500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.17650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.24500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.17650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 311 REMARK 465 GLY A 312 REMARK 465 SER A 313 REMARK 465 SER A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 ALA A 320 REMARK 465 MET A 321 REMARK 465 SER A 322 REMARK 465 GLU A 323 REMARK 465 HIS A 324 REMARK 465 ARG A 325 REMARK 465 ASN A 326 REMARK 465 GLU A 327 REMARK 465 LYS A 328 REMARK 465 GLY A 329 REMARK 465 GLU A 330 REMARK 465 ARG A 331 REMARK 465 ILE A 332 REMARK 465 SER A 333 REMARK 465 MET A 334 REMARK 465 ILE A 335 REMARK 465 ASN A 336 REMARK 465 PRO A 337 REMARK 465 ARG A 483 REMARK 465 ILE A 484 REMARK 465 GLY A 485 REMARK 465 ARG A 486 REMARK 465 ASP A 487 REMARK 465 ARG A 488 REMARK 465 MET B 311 REMARK 465 GLY B 312 REMARK 465 SER B 313 REMARK 465 SER B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 ALA B 320 REMARK 465 MET B 321 REMARK 465 SER B 322 REMARK 465 GLU B 323 REMARK 465 HIS B 324 REMARK 465 ARG B 325 REMARK 465 ASN B 326 REMARK 465 GLU B 327 REMARK 465 LYS B 328 REMARK 465 GLY B 329 REMARK 465 GLU B 330 REMARK 465 ARG B 331 REMARK 465 ILE B 332 REMARK 465 SER B 333 REMARK 465 MET B 334 REMARK 465 ILE B 335 REMARK 465 ASN B 336 REMARK 465 PRO B 337 REMARK 465 ARG B 338 REMARK 465 VAL B 339 REMARK 465 VAL B 340 REMARK 465 LEU B 341 REMARK 465 ASP B 342 REMARK 465 GLU B 343 REMARK 465 ASN B 344 REMARK 465 GLY B 345 REMARK 465 ILE B 346 REMARK 465 SER B 347 REMARK 465 HIS B 348 REMARK 465 ARG B 483 REMARK 465 ILE B 484 REMARK 465 GLY B 485 REMARK 465 ARG B 486 REMARK 465 ASP B 487 REMARK 465 ARG B 488 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 369 CG2 REMARK 470 ASP A 377 OD1 REMARK 470 ARG B 349 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 363 CD1 REMARK 470 LYS B 375 CE NZ REMARK 470 SER B 415 OG REMARK 470 LYS B 433 CD CE NZ REMARK 470 LYS B 482 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 417 60.14 -105.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 514 DISTANCE = 6.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DNO RELATED DB: PDB DBREF 5DNP A 322 488 UNP O74958 MMI1_SCHPO 322 488 DBREF 5DNP B 322 488 UNP O74958 MMI1_SCHPO 322 488 SEQADV 5DNP MET A 311 UNP O74958 EXPRESSION TAG SEQADV 5DNP GLY A 312 UNP O74958 EXPRESSION TAG SEQADV 5DNP SER A 313 UNP O74958 EXPRESSION TAG SEQADV 5DNP SER A 314 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS A 315 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS A 316 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS A 317 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS A 318 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS A 319 UNP O74958 EXPRESSION TAG SEQADV 5DNP ALA A 320 UNP O74958 EXPRESSION TAG SEQADV 5DNP MET A 321 UNP O74958 EXPRESSION TAG SEQADV 5DNP MET B 311 UNP O74958 EXPRESSION TAG SEQADV 5DNP GLY B 312 UNP O74958 EXPRESSION TAG SEQADV 5DNP SER B 313 UNP O74958 EXPRESSION TAG SEQADV 5DNP SER B 314 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS B 315 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS B 316 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS B 317 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS B 318 UNP O74958 EXPRESSION TAG SEQADV 5DNP HIS B 319 UNP O74958 EXPRESSION TAG SEQADV 5DNP ALA B 320 UNP O74958 EXPRESSION TAG SEQADV 5DNP MET B 321 UNP O74958 EXPRESSION TAG SEQRES 1 A 178 MET GLY SER SER HIS HIS HIS HIS HIS ALA MET SER GLU SEQRES 2 A 178 HIS ARG ASN GLU LYS GLY GLU ARG ILE SER MET ILE ASN SEQRES 3 A 178 PRO ARG VAL VAL LEU ASP GLU ASN GLY ILE SER HIS ARG SEQRES 4 A 178 SER ARG TYR PHE ILE MET LEU CYS ASP ASN GLU THR ALA SEQRES 5 A 178 ILE ALA HIS ALA LYS LYS THR SER ILE TRP ALA VAL LYS SEQRES 6 A 178 LYS ASP SER SER LYS ARG ILE SER ASP ALA TYR LYS LYS SEQRES 7 A 178 ALA SER VAL TYR PHE ILE PHE VAL ALA GLN GLN THR TYR SEQRES 8 A 178 ASN ALA LEU GLY TYR ALA GLN VAL VAL SER ASP LEU ASN SEQRES 9 A 178 SER THR GLU LEU PRO PHE TRP SER ASP SER SER HIS ALA SEQRES 10 A 178 GLY GLY VAL ARG ILE LYS TRP ILE LYS THR CYS ASN LEU SEQRES 11 A 178 PHE SER ALA GLU ILE SER GLU ILE VAL SER HIS MET ASP SEQRES 12 A 178 HIS GLY SER GLU ALA ARG ASP GLY MET GLU MET MET TYR SEQRES 13 A 178 ASP GLU GLY SER ARG LEU CYS THR LEU ILE ASN TYR ALA SEQRES 14 A 178 ILE MET LYS ARG ILE GLY ARG ASP ARG SEQRES 1 B 178 MET GLY SER SER HIS HIS HIS HIS HIS ALA MET SER GLU SEQRES 2 B 178 HIS ARG ASN GLU LYS GLY GLU ARG ILE SER MET ILE ASN SEQRES 3 B 178 PRO ARG VAL VAL LEU ASP GLU ASN GLY ILE SER HIS ARG SEQRES 4 B 178 SER ARG TYR PHE ILE MET LEU CYS ASP ASN GLU THR ALA SEQRES 5 B 178 ILE ALA HIS ALA LYS LYS THR SER ILE TRP ALA VAL LYS SEQRES 6 B 178 LYS ASP SER SER LYS ARG ILE SER ASP ALA TYR LYS LYS SEQRES 7 B 178 ALA SER VAL TYR PHE ILE PHE VAL ALA GLN GLN THR TYR SEQRES 8 B 178 ASN ALA LEU GLY TYR ALA GLN VAL VAL SER ASP LEU ASN SEQRES 9 B 178 SER THR GLU LEU PRO PHE TRP SER ASP SER SER HIS ALA SEQRES 10 B 178 GLY GLY VAL ARG ILE LYS TRP ILE LYS THR CYS ASN LEU SEQRES 11 B 178 PHE SER ALA GLU ILE SER GLU ILE VAL SER HIS MET ASP SEQRES 12 B 178 HIS GLY SER GLU ALA ARG ASP GLY MET GLU MET MET TYR SEQRES 13 B 178 ASP GLU GLY SER ARG LEU CYS THR LEU ILE ASN TYR ALA SEQRES 14 B 178 ILE MET LYS ARG ILE GLY ARG ASP ARG HET PO4 A 501 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *57(H2 O) HELIX 1 AA1 ASN A 359 SER A 370 1 12 HELIX 2 AA2 LYS A 376 ALA A 389 1 14 HELIX 3 AA3 SER A 442 HIS A 451 1 10 HELIX 4 AA4 MET A 465 LYS A 482 1 18 HELIX 5 AA5 ASN B 359 SER B 370 1 12 HELIX 6 AA6 LYS B 376 ALA B 389 1 14 HELIX 7 AA7 SER B 442 HIS B 451 1 10 HELIX 8 AA8 MET B 465 LYS B 482 1 18 SHEET 1 AA1 6 ILE A 371 LYS A 375 0 SHEET 2 AA1 6 HIS A 426 LEU A 440 -1 O ALA A 427 N VAL A 374 SHEET 3 AA1 6 ALA A 403 VAL A 409 -1 N ALA A 403 O LEU A 440 SHEET 4 AA1 6 SER A 390 ALA A 397 -1 N PHE A 395 O LEU A 404 SHEET 5 AA1 6 SER A 350 CYS A 357 1 N ARG A 351 O TYR A 392 SHEET 6 AA1 6 GLU A 463 MET A 464 -1 O MET A 464 N TYR A 352 SHEET 1 AA2 6 ILE B 371 LYS B 375 0 SHEET 2 AA2 6 HIS B 426 LEU B 440 -1 O GLY B 428 N VAL B 374 SHEET 3 AA2 6 ALA B 403 VAL B 409 -1 N TYR B 406 O ILE B 435 SHEET 4 AA2 6 SER B 390 ALA B 397 -1 N VAL B 391 O VAL B 409 SHEET 5 AA2 6 SER B 350 CYS B 357 1 N MET B 355 O ILE B 394 SHEET 6 AA2 6 GLU B 463 MET B 464 -1 O MET B 464 N TYR B 352 SITE 1 AC1 3 TYR A 352 TYR A 392 CYS A 473 CRYST1 100.490 58.353 54.266 90.00 108.19 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009951 0.000000 0.003269 0.00000 SCALE2 0.000000 0.017137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019397 0.00000