HEADER HYDROLASE 10-SEP-15 5DNU TITLE CRYSTAL STRUCTURE OF STRIGA KAI2-LIKE PROTEIN IN COMPLEX WITH KARRIKIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHKAI2IB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STRIGA HERMONTHICA; SOURCE 3 ORGANISM_TAXID: 68872; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KAI2 KARRIKIN STRIGA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.XU,T.MIYAKAWA,A.NAKAMURA,M.TANOKURA REVDAT 4 08-NOV-23 5DNU 1 LINK REVDAT 3 28-AUG-19 5DNU 1 REMARK HETSYN REVDAT 2 24-AUG-16 5DNU 1 JRNL REVDAT 1 17-AUG-16 5DNU 0 JRNL AUTH Y.XU,T.MIYAKAWA,H.NAKAMURA,A.NAKAMURA,Y.IMAMURA,T.ASAMI, JRNL AUTH 2 M.TANOKURA JRNL TITL STRUCTURAL BASIS OF UNIQUE LIGAND SPECIFICITY OF KAI2-LIKE JRNL TITL 2 PROTEIN FROM PARASITIC WEED STRIGA HERMONTHICA JRNL REF SCI REP V. 6 31386 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27507097 JRNL DOI 10.1038/SREP31386 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 91454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4887 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6607 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 350 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.031 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.862 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2210 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2089 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2987 ; 1.692 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4777 ; 1.057 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;30.709 ;22.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;12.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.496 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2523 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 542 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1077 ; 2.239 ; 2.017 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1078 ; 2.240 ; 2.018 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1347 ; 2.666 ; 3.035 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1348 ; 2.673 ; 3.039 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1133 ; 2.274 ; 2.281 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1134 ; 2.273 ; 2.280 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1636 ; 2.665 ; 3.310 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2712 ; 3.501 ;17.817 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2713 ; 3.500 ;17.815 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4298 ; 2.143 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 57 ;30.658 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4413 ;12.863 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 19.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 97.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5DNW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, TRIS, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.42200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.84400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.63300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 151.05500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.21100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.42200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 120.84400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 151.05500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 90.63300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 30.21100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 68 O HOH A 401 2.15 REMARK 500 O HOH A 445 O HOH A 575 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 28 -165.38 -110.79 REMARK 500 SER A 88 72.17 -164.53 REMARK 500 SER A 95 -131.86 53.82 REMARK 500 ARG A 123 125.18 -175.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 609 DISTANCE = 6.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 313 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 64 O REMARK 620 2 SER A 68 OG 114.2 REMARK 620 3 HOH A 401 O 151.8 45.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 312 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 83 OE2 REMARK 620 2 EDO A 316 O2 126.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 267 OD1 REMARK 620 2 FMT A 302 O2 112.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KKN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DNV RELATED DB: PDB REMARK 900 RELATED ID: 5DNW RELATED DB: PDB DBREF 5DNU A -4 270 PDB 5DNU 5DNU -4 270 SEQRES 1 A 275 GLY PRO LEU GLY SER MET ASN ARG VAL GLU ALA ALA ARG SEQRES 2 A 275 ASN VAL HIS ILE VAL GLY SER GLY ASP THR THR VAL VAL SEQRES 3 A 275 LEU GLY HIS GLY PHE GLY THR ASP GLN SER VAL TRP LYS SEQRES 4 A 275 HIS LEU VAL PRO TYR LEU VAL ASP SER TYR ARG VAL LEU SEQRES 5 A 275 LEU TYR ASP ASN MET GLY ALA GLY SER THR ASN PRO GLU SEQRES 6 A 275 TYR PHE HIS PHE GLU ARG TYR SER THR LEU GLN GLY TYR SEQRES 7 A 275 ALA HIS ASP LEU LEU VAL ILE LEU HIS GLU PHE ASN ILE SEQRES 8 A 275 ARG SER CYS ILE PHE VAL GLY HIS SER LEU SER ALA MET SEQRES 9 A 275 THR GLY ALA ILE ALA SER ILE ILE ARG PRO ASP LEU PHE SEQRES 10 A 275 GLN LYS ILE VAL MET LEU SER ALA SER PRO ARG PHE LEU SEQRES 11 A 275 ASN THR ALA ASP TYR LEU GLY GLY PHE GLU PRO ALA ASP SEQRES 12 A 275 VAL GLU GLN LEU ALA GLY ALA ILE GLU ALA ASN TYR LYS SEQRES 13 A 275 SER TRP VAL SER GLY PHE ALA PRO MET VAL VAL GLY GLY SEQRES 14 A 275 ASP MET ASP SER VAL ALA VAL GLN GLU PHE SER ARG THR SEQRES 15 A 275 LEU PHE ASN MET ARG PRO ASP ILE ALA ARG SER VAL PHE SEQRES 16 A 275 ARG THR ILE PHE THR SER ASP LEU ARG ASP TYR LEU GLY SEQRES 17 A 275 ARG VAL THR VAL PRO CYS HIS ILE ILE GLN SER SER ARG SEQRES 18 A 275 ASP MET ALA VAL PRO VAL SER VAL ALA GLY TYR ILE HIS SEQRES 19 A 275 ASN ARG VAL GLY GLY ARG SER VAL VAL GLU VAL MET ASN SEQRES 20 A 275 THR GLU GLY HIS LEU PRO GLN LEU SER ALA PRO GLU VAL SEQRES 21 A 275 ALA ILE PRO VAL LEU LEU ARG HIS ILE LYS ASN ASP ILE SEQRES 22 A 275 ASP SER HET KKN A 301 11 HET FMT A 302 3 HET FMT A 303 3 HET FMT A 304 3 HET FMT A 305 3 HET FMT A 306 3 HET FMT A 307 3 HET FMT A 308 3 HET FMT A 309 3 HET FMT A 310 3 HET NA A 311 1 HET NA A 312 1 HET NA A 313 1 HET EDO A 314 4 HET EDO A 315 4 HET EDO A 316 4 HET EDO A 317 4 HET EDO A 318 4 HET BEZ A 319 9 HETNAM KKN 3-METHYL-2H-FURO[2,3-C]PYRAN-2-ONE HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM BEZ BENZOIC ACID HETSYN KKN KARRIKIN KAR1 HETSYN EDO ETHYLENE GLYCOL FORMUL 2 KKN C8 H6 O3 FORMUL 3 FMT 9(C H2 O2) FORMUL 12 NA 3(NA 1+) FORMUL 15 EDO 5(C2 H6 O2) FORMUL 20 BEZ C7 H6 O2 FORMUL 21 HOH *209(H2 O) HELIX 1 AA1 ARG A 3 ASN A 9 1 7 HELIX 2 AA2 ASP A 29 LYS A 34 5 6 HELIX 3 AA3 LEU A 36 LEU A 40 5 5 HELIX 4 AA4 PHE A 64 SER A 68 5 5 HELIX 5 AA5 THR A 69 PHE A 84 1 16 HELIX 6 AA6 SER A 95 ARG A 108 1 14 HELIX 7 AA7 GLU A 135 GLY A 144 1 10 HELIX 8 AA8 ASN A 149 GLY A 163 1 15 HELIX 9 AA9 SER A 168 PHE A 179 1 12 HELIX 10 AB1 ARG A 182 THR A 195 1 14 HELIX 11 AB2 LEU A 198 VAL A 205 5 8 HELIX 12 AB3 VAL A 222 VAL A 232 1 11 HELIX 13 AB4 LEU A 247 ALA A 252 1 6 HELIX 14 AB5 ALA A 252 ASN A 266 1 15 SHEET 1 AA1 7 HIS A 11 GLY A 14 0 SHEET 2 AA1 7 ARG A 45 LEU A 48 -1 O VAL A 46 N VAL A 13 SHEET 3 AA1 7 THR A 19 GLY A 23 1 N VAL A 20 O ARG A 45 SHEET 4 AA1 7 CYS A 89 HIS A 94 1 O VAL A 92 N VAL A 21 SHEET 5 AA1 7 PHE A 112 LEU A 118 1 O VAL A 116 N PHE A 91 SHEET 6 AA1 7 CYS A 209 ARG A 216 1 O HIS A 210 N MET A 117 SHEET 7 AA1 7 SER A 236 GLU A 244 1 O VAL A 237 N ILE A 211 LINK O PHE A 64 NA NA A 313 1555 1555 2.86 LINK OG SER A 68 NA NA A 313 1555 1555 2.99 LINK OE2 GLU A 83 NA NA A 312 1555 1555 2.56 LINK OD1 ASP A 267 NA NA A 311 1555 1555 2.48 LINK O2 FMT A 302 NA NA A 311 1555 1555 2.76 LINK NA NA A 312 O2 EDO A 316 1555 12545 2.74 LINK NA NA A 313 O HOH A 401 1555 1555 2.25 CISPEP 1 ILE A 268 ASP A 269 0 -13.27 SITE 1 AC1 10 PHE A 26 SER A 95 LEU A 96 PHE A 124 SITE 2 AC1 10 LEU A 142 ILE A 193 PHE A 194 ALA A 219 SITE 3 AC1 10 HIS A 246 HOH A 424 SITE 1 AC2 6 TYR A 44 ILE A 90 GLN A 113 ILE A 264 SITE 2 AC2 6 LYS A 265 NA A 311 SITE 1 AC3 9 SER A 15 ASP A 129 TYR A 130 ARG A 199 SITE 2 AC3 9 TYR A 227 ARG A 231 FMT A 309 HOH A 442 SITE 3 AC3 9 HOH A 547 SITE 1 AC4 6 PHE A 64 GLU A 65 ARG A 66 ARG A 108 SITE 2 AC4 6 ASP A 110 HOH A 497 SITE 1 AC5 7 PRO A 109 PHE A 112 GLN A 113 VAL A 207 SITE 2 AC5 7 EDO A 317 HOH A 405 HOH A 408 SITE 1 AC6 5 GLU A 65 SER A 68 PRO A 109 HOH A 444 SITE 2 AC6 5 HOH A 604 SITE 1 AC7 5 PRO A 258 VAL A 259 ARG A 262 HOH A 455 SITE 2 AC7 5 HOH A 462 SITE 1 AC8 5 GLN A 71 SER A 196 ASP A 197 LEU A 198 SITE 2 AC8 5 ARG A 204 SITE 1 AC9 8 GLY A 14 SER A 15 ARG A 199 ASP A 200 SITE 2 AC9 8 ARG A 231 FMT A 303 HOH A 413 HOH A 421 SITE 1 AD1 5 ARG A 262 HIS A 263 ASN A 266 ASP A 267 SITE 2 AD1 5 HOH A 500 SITE 1 AD2 5 GLN A 113 LYS A 114 ASN A 266 ASP A 267 SITE 2 AD2 5 FMT A 302 SITE 1 AD3 5 VAL A 4 ARG A 8 VAL A 79 GLU A 83 SITE 2 AD3 5 EDO A 316 SITE 1 AD4 5 HIS A 63 PHE A 64 GLU A 65 SER A 68 SITE 2 AD4 5 HOH A 401 SITE 1 AD5 8 PRO A 38 ARG A 123 LEU A 125 THR A 195 SITE 2 AD5 8 SER A 196 ASP A 197 HOH A 425 HOH A 473 SITE 1 AD6 7 ILE A 12 ARG A 45 TYR A 227 ASN A 230 SITE 2 AD6 7 ARG A 231 HOH A 493 HOH A 510 SITE 1 AD7 6 ARG A 8 ARG A 66 VAL A 79 HIS A 82 SITE 2 AD7 6 NA A 312 HOH A 543 SITE 1 AD8 5 THR A 206 VAL A 207 FMT A 305 HOH A 405 SITE 2 AD8 5 HOH A 565 SITE 1 AD9 4 TYR A 130 LEU A 131 SER A 223 HOH A 510 SITE 1 AE1 5 GLN A 71 ILE A 103 ILE A 107 TYR A 201 SITE 2 AE1 5 HOH A 553 CRYST1 75.757 75.757 181.266 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013200 0.007621 0.000000 0.00000 SCALE2 0.000000 0.015242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005517 0.00000