HEADER LYASE 10-SEP-15 5DNX TITLE CRYSTAL STRUCTURE OF IGPD FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH TITLE 2 (R)-C348 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE; COMPND 3 CHAIN: A, C, B; COMPND 4 SYNONYM: IGPD; COMPND 5 EC: 4.2.1.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: HISB, PF1660; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, DEHYDRATASE, LYASE, CYTOPLASMIC EXPDTA X-RAY DIFFRACTION AUTHOR C.BISSON,K.L.BRITTON,S.E.SEDELNIKOVA,H.F.RODGERS,T.C.EADSFORTH, AUTHOR 2 R.C.VINER,T.R.HAWKES,P.J.BAKER,D.W.RICE REVDAT 4 08-MAY-24 5DNX 1 LINK ATOM REVDAT 3 26-OCT-16 5DNX 1 JRNL REVDAT 2 19-OCT-16 5DNX 1 JRNL REVDAT 1 05-OCT-16 5DNX 0 JRNL AUTH C.BISSON,K.L.BRITTON,S.E.SEDELNIKOVA,H.F.RODGERS, JRNL AUTH 2 T.C.EADSFORTH,R.C.VINER,T.R.HAWKES,P.J.BAKER,D.W.RICE JRNL TITL MIRROR-IMAGE PACKING PROVIDES A MOLECULAR BASIS FOR THE JRNL TITL 2 NANOMOLAR EQUIPOTENCY OF ENANTIOMERS OF AN EXPERIMENTAL JRNL TITL 3 HERBICIDE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 55 13485 2016 JRNL REFN ESSN 1521-3773 JRNL PMID 27717128 JRNL DOI 10.1002/ANIE.201607185 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3241 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1630 REMARK 3 BIN FREE R VALUE SET COUNT : 239 REMARK 3 BIN FREE R VALUE : 0.1910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.580 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4308 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4264 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5823 ; 1.505 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9799 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ; 6.474 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;33.018 ;23.651 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 801 ;11.433 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;18.235 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 674 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4778 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 959 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2125 ; 8.657 ; 1.770 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2124 ; 7.389 ; 1.764 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2655 ; 6.777 ; 2.607 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2656 ; 7.422 ; 2.610 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2183 ;23.529 ; 2.469 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2184 ;23.524 ; 2.468 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3161 ;17.946 ; 3.267 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4957 ;16.325 ;15.227 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4958 ;16.323 ;15.227 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213497. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63077 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.30 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.30 REMARK 200 R MERGE FOR SHELL (I) : 1.00600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES BUFFER PH 6 AND 12% MPD, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 70.21500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 70.21500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.36000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 70.21500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 70.21500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 68.36000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 70.21500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 70.21500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 68.36000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 70.21500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 70.21500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 68.36000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 70.21500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.21500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 68.36000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 70.21500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 70.21500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 68.36000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 70.21500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 70.21500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 68.36000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 70.21500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 70.21500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 85560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 125740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -537.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 136.72000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 136.72000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 136.72000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 136.72000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 360 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 76 -51.20 78.75 REMARK 500 ASP A 85 -121.33 46.65 REMARK 500 ARG A 131 72.02 69.58 REMARK 500 GLU A 142 -35.95 -130.82 REMARK 500 ARG C 76 -50.76 82.26 REMARK 500 ASP C 85 -122.14 45.80 REMARK 500 ARG C 131 68.95 67.21 REMARK 500 GLU C 142 -34.68 -130.62 REMARK 500 ARG B 76 -49.22 79.07 REMARK 500 ASP B 85 -120.59 47.58 REMARK 500 ARG B 131 72.22 71.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 29 NE2 REMARK 620 2 HIS A 53 NE2 52.7 REMARK 620 3 HIS A 145 NE2 107.2 55.7 REMARK 620 4 GLU A 149 OE1 90.4 75.8 84.2 REMARK 620 5 5LD A 203 O13 53.4 3.2 55.9 72.6 REMARK 620 6 5LD A 203 N1 56.0 6.6 54.4 69.5 3.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 52 NE2 REMARK 620 2 GLU A 56 OE1 94.4 REMARK 620 3 GLU A 121 OE1 97.3 88.5 REMARK 620 4 HIS A 146 NE2 51.2 83.2 47.4 REMARK 620 5 5LD A 203 N4 84.3 85.3 173.7 132.5 REMARK 620 6 HOH A 313 O 169.7 80.5 91.5 136.0 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 29 NE2 REMARK 620 2 HIS C 145 NE2 107.7 REMARK 620 3 GLU C 149 OE1 90.9 84.7 REMARK 620 4 HIS B 53 NE2 84.3 30.7 104.9 REMARK 620 5 5LD B 205 O13 82.2 28.4 72.4 32.6 REMARK 620 6 5LD B 205 N1 84.5 25.9 73.2 31.7 2.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 52 NE2 REMARK 620 2 GLU C 56 OE1 93.8 REMARK 620 3 GLU C 121 OE1 95.1 86.4 REMARK 620 4 HIS B 146 NE2 91.0 174.0 89.5 REMARK 620 5 5LD B 201 N4 85.2 87.3 173.7 96.8 REMARK 620 6 HOH B 304 O 170.9 83.5 93.4 92.3 86.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 53 NE2 REMARK 620 2 HIS B 29 NE2 87.2 REMARK 620 3 HIS B 145 NE2 90.6 107.3 REMARK 620 4 GLU B 149 OE1 174.2 90.5 84.9 REMARK 620 5 5LD B 201 O13 95.6 83.6 167.7 89.5 REMARK 620 6 5LD B 201 N1 86.2 163.0 88.4 97.4 81.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 146 NE2 REMARK 620 2 HOH C 303 O 56.2 REMARK 620 3 HIS B 52 NE2 75.5 19.3 REMARK 620 4 GLU B 56 OE1 75.5 19.3 2.0 REMARK 620 5 GLU B 121 OE1 71.7 15.5 3.8 4.1 REMARK 620 6 5LD B 205 N4 54.3 1.9 21.2 21.2 17.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5LD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5LD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5LD B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DNL RELATED DB: PDB REMARK 900 5DNL CONTAINS THE SAME PROTEIN COMPLEXED WITH THE S ENANTIOMER OF REMARK 900 C348 (LIGAND ID: 5DL) DBREF 5DNX A 1 176 UNP P58880 HIS7_PYRFU 1 176 DBREF 5DNX C 1 176 UNP P58880 HIS7_PYRFU 1 176 DBREF 5DNX B 1 176 UNP P58880 HIS7_PYRFU 1 176 SEQRES 1 A 176 MET ARG ARG THR THR LYS GLU THR ASP ILE ILE VAL GLU SEQRES 2 A 176 ILE GLY LYS LYS GLY GLU ILE LYS THR ASN ASP LEU ILE SEQRES 3 A 176 LEU ASP HIS MET LEU THR ALA PHE ALA PHE TYR LEU GLY SEQRES 4 A 176 LYS ASP MET ARG ILE THR ALA THR TYR ASP LEU ARG HIS SEQRES 5 A 176 HIS LEU TRP GLU ASP ILE GLY ILE THR LEU GLY GLU ALA SEQRES 6 A 176 LEU ARG GLU ASN LEU PRO GLU LYS PHE THR ARG PHE GLY SEQRES 7 A 176 ASN ALA ILE MET PRO MET ASP ASP ALA LEU VAL LEU VAL SEQRES 8 A 176 SER VAL ASP ILE SER ASN ARG PRO TYR ALA ASN VAL ASP SEQRES 9 A 176 VAL ASN ILE LYS ASP ALA GLU GLU GLY PHE ALA VAL SER SEQRES 10 A 176 LEU LEU LYS GLU PHE VAL TRP GLY LEU ALA ARG GLY LEU SEQRES 11 A 176 ARG ALA THR ILE HIS ILE LYS GLN LEU SER GLY GLU ASN SEQRES 12 A 176 ALA HIS HIS ILE VAL GLU ALA ALA PHE LYS GLY LEU GLY SEQRES 13 A 176 MET ALA LEU ARG VAL ALA THR LYS GLU SER GLU ARG VAL SEQRES 14 A 176 GLU SER THR LYS GLY VAL LEU SEQRES 1 C 176 MET ARG ARG THR THR LYS GLU THR ASP ILE ILE VAL GLU SEQRES 2 C 176 ILE GLY LYS LYS GLY GLU ILE LYS THR ASN ASP LEU ILE SEQRES 3 C 176 LEU ASP HIS MET LEU THR ALA PHE ALA PHE TYR LEU GLY SEQRES 4 C 176 LYS ASP MET ARG ILE THR ALA THR TYR ASP LEU ARG HIS SEQRES 5 C 176 HIS LEU TRP GLU ASP ILE GLY ILE THR LEU GLY GLU ALA SEQRES 6 C 176 LEU ARG GLU ASN LEU PRO GLU LYS PHE THR ARG PHE GLY SEQRES 7 C 176 ASN ALA ILE MET PRO MET ASP ASP ALA LEU VAL LEU VAL SEQRES 8 C 176 SER VAL ASP ILE SER ASN ARG PRO TYR ALA ASN VAL ASP SEQRES 9 C 176 VAL ASN ILE LYS ASP ALA GLU GLU GLY PHE ALA VAL SER SEQRES 10 C 176 LEU LEU LYS GLU PHE VAL TRP GLY LEU ALA ARG GLY LEU SEQRES 11 C 176 ARG ALA THR ILE HIS ILE LYS GLN LEU SER GLY GLU ASN SEQRES 12 C 176 ALA HIS HIS ILE VAL GLU ALA ALA PHE LYS GLY LEU GLY SEQRES 13 C 176 MET ALA LEU ARG VAL ALA THR LYS GLU SER GLU ARG VAL SEQRES 14 C 176 GLU SER THR LYS GLY VAL LEU SEQRES 1 B 176 MET ARG ARG THR THR LYS GLU THR ASP ILE ILE VAL GLU SEQRES 2 B 176 ILE GLY LYS LYS GLY GLU ILE LYS THR ASN ASP LEU ILE SEQRES 3 B 176 LEU ASP HIS MET LEU THR ALA PHE ALA PHE TYR LEU GLY SEQRES 4 B 176 LYS ASP MET ARG ILE THR ALA THR TYR ASP LEU ARG HIS SEQRES 5 B 176 HIS LEU TRP GLU ASP ILE GLY ILE THR LEU GLY GLU ALA SEQRES 6 B 176 LEU ARG GLU ASN LEU PRO GLU LYS PHE THR ARG PHE GLY SEQRES 7 B 176 ASN ALA ILE MET PRO MET ASP ASP ALA LEU VAL LEU VAL SEQRES 8 B 176 SER VAL ASP ILE SER ASN ARG PRO TYR ALA ASN VAL ASP SEQRES 9 B 176 VAL ASN ILE LYS ASP ALA GLU GLU GLY PHE ALA VAL SER SEQRES 10 B 176 LEU LEU LYS GLU PHE VAL TRP GLY LEU ALA ARG GLY LEU SEQRES 11 B 176 ARG ALA THR ILE HIS ILE LYS GLN LEU SER GLY GLU ASN SEQRES 12 B 176 ALA HIS HIS ILE VAL GLU ALA ALA PHE LYS GLY LEU GLY SEQRES 13 B 176 MET ALA LEU ARG VAL ALA THR LYS GLU SER GLU ARG VAL SEQRES 14 B 176 GLU SER THR LYS GLY VAL LEU HET MN A 201 1 HET MN A 202 1 HET 5LD A 203 13 HET MN C 201 1 HET 5LD B 201 13 HET MN B 202 1 HET MN B 203 1 HET MN B 204 1 HET 5LD B 205 13 HETNAM MN MANGANESE (II) ION HETNAM 5LD [(2R)-2-HYDROXY-3-(1H-1,2,4-TRIAZOL-1-YL) HETNAM 2 5LD PROPYL]PHOSPHONIC ACID HETSYN 5LD (R)-C348 FORMUL 4 MN 6(MN 2+) FORMUL 6 5LD 3(C5 H10 N3 O4 P) FORMUL 13 HOH *322(H2 O) HELIX 1 AA1 ASP A 24 GLY A 39 1 16 HELIX 2 AA2 LEU A 50 LEU A 70 1 21 HELIX 3 AA3 ALA A 115 ARG A 131 1 17 HELIX 4 AA4 ASN A 143 THR A 163 1 21 HELIX 5 AA5 ASP C 24 GLY C 39 1 16 HELIX 6 AA6 LEU C 50 LEU C 70 1 21 HELIX 7 AA7 ALA C 115 ARG C 131 1 17 HELIX 8 AA8 ASN C 143 THR C 163 1 21 HELIX 9 AA9 ASP B 24 GLY B 39 1 16 HELIX 10 AB1 LEU B 50 LEU B 70 1 21 HELIX 11 AB2 ALA B 115 ARG B 131 1 17 HELIX 12 AB3 ASN B 143 THR B 163 1 21 SHEET 1 AA1 4 ARG A 2 THR A 4 0 SHEET 2 AA1 4 THR A 8 ILE A 14 -1 O ILE A 10 N ARG A 3 SHEET 3 AA1 4 MET A 42 TYR A 48 -1 O ARG A 43 N GLU A 13 SHEET 4 AA1 4 ILE A 20 LYS A 21 1 N LYS A 21 O ILE A 44 SHEET 1 AA2 4 PHE A 77 MET A 84 0 SHEET 2 AA2 4 ALA A 87 ASP A 94 -1 O VAL A 91 N ALA A 80 SHEET 3 AA2 4 THR A 133 SER A 140 -1 O LEU A 139 N LEU A 88 SHEET 4 AA2 4 TYR A 100 ASP A 104 1 N ASP A 104 O ILE A 136 SHEET 1 AA3 4 ARG C 2 THR C 4 0 SHEET 2 AA3 4 THR C 8 ILE C 14 -1 O ILE C 10 N ARG C 3 SHEET 3 AA3 4 MET C 42 TYR C 48 -1 O ARG C 43 N GLU C 13 SHEET 4 AA3 4 ILE C 20 LYS C 21 1 N LYS C 21 O ILE C 44 SHEET 1 AA4 4 PHE C 77 MET C 84 0 SHEET 2 AA4 4 ALA C 87 ASP C 94 -1 O VAL C 93 N GLY C 78 SHEET 3 AA4 4 THR C 133 SER C 140 -1 O LYS C 137 N LEU C 90 SHEET 4 AA4 4 TYR C 100 ASP C 104 1 N ASP C 104 O ILE C 136 SHEET 1 AA5 4 ARG B 2 THR B 4 0 SHEET 2 AA5 4 THR B 8 ILE B 14 -1 O ILE B 10 N ARG B 3 SHEET 3 AA5 4 MET B 42 TYR B 48 -1 O THR B 45 N ILE B 11 SHEET 4 AA5 4 ILE B 20 LYS B 21 1 N LYS B 21 O ILE B 44 SHEET 1 AA6 4 PHE B 77 MET B 84 0 SHEET 2 AA6 4 ALA B 87 ASP B 94 -1 O VAL B 91 N ALA B 80 SHEET 3 AA6 4 THR B 133 SER B 140 -1 O LYS B 137 N LEU B 90 SHEET 4 AA6 4 TYR B 100 ASP B 104 1 N ASP B 104 O ILE B 136 LINK NE2 HIS A 29 MN MN A 202 1555 3555 2.26 LINK NE2 HIS A 52 MN MN A 201 1555 1555 2.26 LINK NE2 HIS A 53 MN MN A 202 1555 1555 2.33 LINK OE1 GLU A 56 MN MN A 201 1555 1555 2.19 LINK OE1 GLU A 121 MN MN A 201 1555 1555 2.16 LINK NE2 HIS A 145 MN MN A 202 1555 3555 2.29 LINK NE2 HIS A 146 MN MN A 201 1555 3555 2.31 LINK OE1 GLU A 149 MN MN A 202 1555 3555 2.17 LINK MN MN A 201 N4 5LD A 203 1555 1555 2.29 LINK MN MN A 201 O HOH A 313 1555 4555 2.25 LINK MN MN A 202 O13 5LD A 203 1555 1555 2.28 LINK MN MN A 202 N1 5LD A 203 1555 1555 2.26 LINK NE2 HIS C 29 MN MN B 203 1555 4555 2.25 LINK NE2 HIS C 52 MN MN C 201 1555 1555 2.26 LINK NE2 HIS C 53 MN MN B 202 1555 1555 2.33 LINK OE1 GLU C 56 MN MN C 201 1555 1555 2.14 LINK OE1 GLU C 121 MN MN C 201 1555 1555 2.14 LINK NE2 HIS C 145 MN MN B 203 1555 4555 2.28 LINK NE2 HIS C 146 MN MN B 204 1555 4555 2.28 LINK OE1 GLU C 149 MN MN B 203 1555 4555 2.13 LINK MN MN C 201 NE2 HIS B 146 1555 1555 2.28 LINK MN MN C 201 N4 5LD B 201 1555 1555 2.29 LINK MN MN C 201 O HOH B 304 1555 1555 2.21 LINK O HOH C 303 MN MN B 204 3555 1555 2.23 LINK NE2 HIS B 29 MN MN B 202 1555 1555 2.26 LINK NE2 HIS B 52 MN MN B 204 1555 6556 2.25 LINK NE2 HIS B 53 MN MN B 203 1555 6556 2.30 LINK OE1 GLU B 56 MN MN B 204 1555 6556 2.15 LINK OE1 GLU B 121 MN MN B 204 1555 6556 2.14 LINK NE2 HIS B 145 MN MN B 202 1555 1555 2.29 LINK OE1 GLU B 149 MN MN B 202 1555 1555 2.16 LINK O13 5LD B 201 MN MN B 202 1555 1555 2.24 LINK N1 5LD B 201 MN MN B 202 1555 1555 2.24 LINK MN MN B 203 O13 5LD B 205 1555 1555 2.23 LINK MN MN B 203 N1 5LD B 205 1555 1555 2.28 LINK MN MN B 204 N4 5LD B 205 1555 1555 2.27 SITE 1 AC1 6 HIS A 52 GLU A 56 GLU A 121 HIS A 146 SITE 2 AC1 6 5LD A 203 HOH A 313 SITE 1 AC2 5 HIS A 29 HIS A 53 HIS A 145 GLU A 149 SITE 2 AC2 5 5LD A 203 SITE 1 AC3 17 GLU A 7 HIS A 29 HIS A 52 HIS A 53 SITE 2 AC3 17 GLU A 56 MET A 84 HIS A 145 HIS A 146 SITE 3 AC3 17 GLU A 149 LYS A 153 MN A 201 MN A 202 SITE 4 AC3 17 HOH A 318 ARG C 76 ARG C 98 SER C 171 SITE 5 AC3 17 LYS C 173 SITE 1 AC4 6 HIS B 146 5LD B 201 HOH B 304 HIS C 52 SITE 2 AC4 6 GLU C 56 GLU C 121 SITE 1 AC5 18 ARG A 76 ARG A 98 SER A 171 LYS A 173 SITE 2 AC5 18 HIS B 29 MET B 84 HIS B 145 HIS B 146 SITE 3 AC5 18 GLU B 149 LYS B 153 MN B 202 HOH B 304 SITE 4 AC5 18 HOH B 324 GLU C 7 HIS C 52 HIS C 53 SITE 5 AC5 18 GLU C 56 MN C 201 SITE 1 AC6 5 HIS B 29 HIS B 145 GLU B 149 5LD B 201 SITE 2 AC6 5 HIS C 53 SITE 1 AC7 5 HIS B 53 5LD B 205 HIS C 29 HIS C 145 SITE 2 AC7 5 GLU C 149 SITE 1 AC8 6 HIS B 52 GLU B 56 GLU B 121 5LD B 205 SITE 2 AC8 6 HIS C 146 HOH C 303 SITE 1 AC9 18 GLU B 7 HIS B 52 HIS B 53 GLU B 56 SITE 2 AC9 18 ARG B 76 ARG B 98 SER B 171 LYS B 173 SITE 3 AC9 18 MN B 203 MN B 204 HOH B 315 HIS C 29 SITE 4 AC9 18 MET C 84 HIS C 145 HIS C 146 GLU C 149 SITE 5 AC9 18 LYS C 153 HOH C 303 CRYST1 140.430 140.430 136.720 90.00 90.00 90.00 I 4 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007121 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007314 0.00000