HEADER HYDROLASE 14-SEP-15 5DPX TITLE 1,2,4-TRIAZOLE-3-THIONE COMPOUNDS AS INHIBITORS OF L1, DI-ZINC TITLE 2 METALLO-BETA-LACTAMASES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE L1 TYPE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: B3 METALLO-BETA-LACTAMASE,BETA-LACTAMASE TYPE III,METALLO- COMPND 5 BETA-LACTAMASE L1 TYPE III,PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS MALTOPHILIA; SOURCE 4 ORGANISM_TAXID: 40324; SOURCE 5 CELLULAR_LOCATION: PERIPLASM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET26 KEYWDS HYDROLASE, METALLO, ZN, LACTAMASE EXPDTA X-RAY DIFFRACTION AUTHOR L.NAUTON,G.GARAU,R.KHAN,O.DIDEBERG REVDAT 4 10-JAN-24 5DPX 1 REMARK LINK REVDAT 3 28-JUN-17 5DPX 1 JRNL REVDAT 2 24-MAY-17 5DPX 1 JRNL REVDAT 1 11-JAN-17 5DPX 0 JRNL AUTH L.SEVAILLE,L.GAVARA,C.BEBRONE,F.DE LUCA,L.NAUTON,M.ACHARD, JRNL AUTH 2 P.MERCURI,S.TANFONI,L.BORGIANNI,C.GUYON,P.LONJON, JRNL AUTH 3 G.TURAN-ZITOUNI,J.DZIECIOLOWSKI,K.BECKER,L.BENARD,C.CONDON, JRNL AUTH 4 L.MAILLARD,J.MARTINEZ,J.M.FRERE,O.DIDEBERG,M.GALLENI, JRNL AUTH 5 J.D.DOCQUIER,J.F.HERNANDEZ JRNL TITL 1,2,4-TRIAZOLE-3-THIONE COMPOUNDS AS INHIBITORS OF DIZINC JRNL TITL 2 METALLO-BETA-LACTAMASES. JRNL REF CHEMMEDCHEM V. 12 972 2017 JRNL REFN ESSN 1860-7187 JRNL PMID 28505394 JRNL DOI 10.1002/CMDC.201700186 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.GARAU,I.GARCIA-SAEZ,C.BEBRONE,C.ANNE,P.MERCURI,M.GALLENI, REMARK 1 AUTH 2 J.-M.FRERE,O.DIDEBERG REMARK 1 TITL UPDATE OF THE STANDARD NUMBERING SCHEME FOR CLASS B REMARK 1 TITL 2 BETA-LACTAMASES REMARK 1 REF ANTIMICROB.AGENTS CHEMOTHER. V. 48 2347 2004 REMARK 1 REFN ISSN 0066-4804 REMARK 1 PMID 15215079 REMARK 1 DOI 10.1128/AAC.48.7.2347-2349.2004 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.CARFI,S.PARES,E.DUEE,M.GALLENI,C.DUEZ,J.-M.FRERE, REMARK 1 AUTH 2 O.DIDEBERG REMARK 1 TITL THE 3-D STRUCTURE OF A ZINC METALLO-BETA-LACTAMASE FROM REMARK 1 TITL 2 BACILLUS CEREUS REVEALS A NEW TYPE OF PROTEIN FOLD REMARK 1 REF EMBO J. V. 14 4914 1995 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 7588620 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.NAUTON,R.KAHN,G.GARAU,J.F.HERNANDEZ,O.DIDEBERG REMARK 1 TITL STRUCTURAL INSIGHTS INTO THE DESIGN OF INHIBITORS FOR THE L1 REMARK 1 TITL 2 METALLO-BETA-LACTAMASE FROM STENOTROPHOMONAS MALTOPHILIA. REMARK 1 REF J.MOL.BIOL. V. 375 257 2008 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 17999929 REMARK 1 DOI 10.1016/J.JMB.2007.10.036 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2057: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 53574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.730 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8518 - 4.4433 0.98 4061 158 0.1777 0.1882 REMARK 3 2 4.4433 - 3.5333 0.99 3870 149 0.1502 0.1837 REMARK 3 3 3.5333 - 3.0885 0.98 3776 147 0.1615 0.1934 REMARK 3 4 3.0885 - 2.8070 0.98 3771 146 0.1669 0.2095 REMARK 3 5 2.8070 - 2.6063 0.98 3709 145 0.1711 0.2326 REMARK 3 6 2.6063 - 2.4529 0.97 3678 142 0.1644 0.2074 REMARK 3 7 2.4529 - 2.3303 0.97 3645 142 0.1561 0.2117 REMARK 3 8 2.3303 - 2.2290 0.96 3654 141 0.1503 0.1856 REMARK 3 9 2.2290 - 2.1433 0.96 3601 139 0.1504 0.2092 REMARK 3 10 2.1433 - 2.0694 0.96 3597 140 0.1627 0.2083 REMARK 3 11 2.0694 - 2.0047 0.95 3601 139 0.1748 0.2402 REMARK 3 12 2.0047 - 1.9475 0.95 3527 138 0.1862 0.2361 REMARK 3 13 1.9475 - 1.8963 0.95 3559 137 0.1989 0.2254 REMARK 3 14 1.8963 - 1.8500 0.94 3525 137 0.2168 0.2640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4220 REMARK 3 ANGLE : 0.981 5775 REMARK 3 CHIRALITY : 0.045 630 REMARK 3 PLANARITY : 0.005 762 REMARK 3 DIHEDRAL : 11.209 2473 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : XENOCS MULTILAYERS MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 19.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38500 REMARK 200 R SYM FOR SHELL (I) : 0.38500 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2HB9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1M HEPES, REMARK 280 PH7.75, 1.5% V/V PEG 400, VAPOR DIFFUSION, HANGING DROP., REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.32667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.66333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 131.32667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.66333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 131.32667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.66333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 131.32667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.66333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.52000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 90.96731 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 728 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 22 REMARK 465 ALA A 289 REMARK 465 ARG A 290 REMARK 465 ALA B 22 REMARK 465 ALA B 289 REMARK 465 ARG B 290 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 23 N CA CB CG CD OE1 OE2 REMARK 480 LYS A 277 CD CE NZ REMARK 480 GLU B 23 N CA CB CG CD OE1 OE2 REMARK 480 GLU B 225 CG CD OE1 OE2 REMARK 480 GLY B 288 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 675 O HOH A 707 2.04 REMARK 500 O HOH B 608 O HOH B 707 2.08 REMARK 500 O HOH B 738 O HOH B 756 2.09 REMARK 500 O HOH A 734 O HOH A 757 2.11 REMARK 500 O HOH B 626 O HOH B 740 2.12 REMARK 500 O HOH A 685 O HOH A 723 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 702 O HOH A 702 4665 1.91 REMARK 500 O HOH A 677 O HOH B 676 6555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 153.58 73.47 REMARK 500 ALA A 106 55.15 -95.60 REMARK 500 TYR A 220 72.28 -150.56 REMARK 500 CYS A 239 65.92 -155.48 REMARK 500 ASP B 74 155.77 73.57 REMARK 500 ASP B 192 -163.88 -102.67 REMARK 500 CYS B 239 68.17 -156.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 HIS A 107 ND1 98.8 REMARK 620 3 HIS A 181 NE2 98.0 109.3 REMARK 620 4 L3B A 403 N5 137.2 103.7 107.9 REMARK 620 5 L3B A 403 N5 143.5 106.4 98.0 10.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD2 REMARK 620 2 HIS A 110 NE2 104.3 REMARK 620 3 HIS A 246 NE2 102.0 100.6 REMARK 620 4 L3B A 403 S6 123.6 119.4 102.9 REMARK 620 5 L3B A 403 S6 126.6 116.4 102.7 3.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 105 NE2 REMARK 620 2 HIS B 107 ND1 104.3 REMARK 620 3 HIS B 181 NE2 100.5 107.5 REMARK 620 4 L3B B 403 N5 134.0 106.5 101.7 REMARK 620 5 L3B B 403 N5 142.1 101.8 97.2 8.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 109 OD2 REMARK 620 2 HIS B 110 NE2 99.9 REMARK 620 3 HIS B 246 NE2 105.6 105.4 REMARK 620 4 L3B B 403 S6 129.6 119.2 93.9 REMARK 620 5 L3B B 403 S6 130.4 111.8 101.6 9.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L3B A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L3B B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FM6 RELATED DB: PDB REMARK 900 NATIVE FORM REMARK 900 RELATED ID: 2FU7 RELATED DB: PDB REMARK 900 CU-SUBSTITUTED FORM REMARK 900 RELATED ID: 2FU8 RELATED DB: PDB REMARK 900 D-CAPTOPRIL COMPLEX REMARK 900 RELATED ID: 2FU9 RELATED DB: PDB REMARK 900 MP2 INHIBITOR COMPLEX REMARK 900 RELATED ID: 2GFJ RELATED DB: PDB REMARK 900 INHIBITOR 1 COMPLEX REMARK 900 RELATED ID: 2GFK RELATED DB: PDB REMARK 900 INHIBITOR 2 COMPLEX REMARK 900 RELATED ID: 2HB9 RELATED DB: PDB REMARK 900 INHIBITOR 3 COMPLEX DBREF 5DPX A 22 290 UNP P52700 BLA1_STEMA 22 290 DBREF 5DPX B 22 290 UNP P52700 BLA1_STEMA 22 290 SEQRES 1 A 269 ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR THR VAL SEQRES 2 A 269 ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU GLN ILE SEQRES 3 A 269 ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP LEU THR SEQRES 4 A 269 ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL LEU LEU SEQRES 5 A 269 ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU LEU ASP SEQRES 6 A 269 ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP LEU ARG SEQRES 7 A 269 LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS ALA GLY SEQRES 8 A 269 PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA LYS VAL SEQRES 9 A 269 ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA ARG GLY SEQRES 10 A 269 GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE THR TYR SEQRES 11 A 269 PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP GLY GLU SEQRES 12 A 269 VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA HIS PHE SEQRES 13 A 269 MET ALA GLY HIS THR PRO GLY SER THR ALA TRP THR TRP SEQRES 14 A 269 THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE ALA TYR SEQRES 15 A 269 ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU GLN GLY SEQRES 16 A 269 ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR ARG ARG SEQRES 17 A 269 SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP VAL LEU SEQRES 18 A 269 LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP TYR ALA SEQRES 19 A 269 ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR CYS LYS SEQRES 20 A 269 ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP GLY GLN SEQRES 21 A 269 LEU ALA LYS GLU THR ALA GLY ALA ARG SEQRES 1 B 269 ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR THR VAL SEQRES 2 B 269 ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU GLN ILE SEQRES 3 B 269 ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP LEU THR SEQRES 4 B 269 ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL LEU LEU SEQRES 5 B 269 ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU LEU ASP SEQRES 6 B 269 ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP LEU ARG SEQRES 7 B 269 LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS ALA GLY SEQRES 8 B 269 PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA LYS VAL SEQRES 9 B 269 ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA ARG GLY SEQRES 10 B 269 GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE THR TYR SEQRES 11 B 269 PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP GLY GLU SEQRES 12 B 269 VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA HIS PHE SEQRES 13 B 269 MET ALA GLY HIS THR PRO GLY SER THR ALA TRP THR TRP SEQRES 14 B 269 THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE ALA TYR SEQRES 15 B 269 ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU GLN GLY SEQRES 16 B 269 ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR ARG ARG SEQRES 17 B 269 SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP VAL LEU SEQRES 18 B 269 LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP TYR ALA SEQRES 19 B 269 ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR CYS LYS SEQRES 20 B 269 ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP GLY GLN SEQRES 21 B 269 LEU ALA LYS GLU THR ALA GLY ALA ARG HET ZN A 401 1 HET ZN A 402 1 HET L3B A 403 40 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET ZN B 401 1 HET ZN B 402 1 HET L3B B 403 40 HET SO4 B 404 5 HETNAM ZN ZINC ION HETNAM L3B 5-(2-METHYLPHENYL)-3H-1,2,4-TRIAZOLE-3-THIONE HETNAM SO4 SULFATE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 L3B 2(C9 H7 N3 S) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *518(H2 O) HELIX 1 AA1 ASP A 35 GLN A 40 5 6 HELIX 2 AA2 MET A 77 GLN A 79 5 3 HELIX 3 AA3 MET A 80 GLY A 92 1 13 HELIX 4 AA4 HIS A 107 GLY A 112 1 6 HELIX 5 AA5 PRO A 113 THR A 121 1 9 HELIX 6 AA6 ASN A 128 ARG A 137 1 10 HELIX 7 AA7 HIS A 222 LEU A 237 1 16 HELIX 8 AA8 HIS A 246 ASN A 251 5 6 HELIX 9 AA9 ALA A 256 ALA A 260 5 5 HELIX 10 AB1 THR A 266 GLY A 288 1 23 HELIX 11 AB2 ASP B 35 GLN B 40 5 6 HELIX 12 AB3 MET B 77 GLN B 79 5 3 HELIX 13 AB4 MET B 80 ARG B 91 1 12 HELIX 14 AB5 THR B 94 ARG B 96 5 3 HELIX 15 AB6 HIS B 107 GLY B 112 1 6 HELIX 16 AB7 PRO B 113 THR B 121 1 9 HELIX 17 AB8 ASN B 128 ARG B 137 1 10 HELIX 18 AB9 HIS B 222 ALA B 236 1 15 HELIX 19 AC1 HIS B 246 ASN B 251 5 6 HELIX 20 AC2 ALA B 256 ALA B 260 5 5 HELIX 21 AC3 THR B 266 GLY B 288 1 23 SHEET 1 AA1 7 LEU A 45 ALA A 48 0 SHEET 2 AA1 7 THR A 51 GLN A 53 -1 O GLN A 53 N LEU A 45 SHEET 3 AA1 7 LEU A 62 THR A 66 -1 O LEU A 63 N TRP A 52 SHEET 4 AA1 7 GLY A 69 LEU A 73 -1 O VAL A 71 N VAL A 64 SHEET 5 AA1 7 LEU A 98 LEU A 102 1 O LEU A 102 N LEU A 72 SHEET 6 AA1 7 LYS A 124 ALA A 127 1 O LYS A 124 N ILE A 101 SHEET 7 AA1 7 ARG A 158 ILE A 159 1 O ARG A 158 N ALA A 127 SHEET 1 AA2 5 VAL A 165 VAL A 168 0 SHEET 2 AA2 5 ILE A 171 PHE A 177 -1 O PHE A 173 N ILE A 166 SHEET 3 AA2 5 THR A 186 ARG A 194 -1 O ALA A 187 N HIS A 176 SHEET 4 AA2 5 LYS A 197 TYR A 203 -1 O VAL A 199 N ASP A 192 SHEET 5 AA2 5 VAL A 241 LEU A 243 1 O VAL A 241 N ALA A 202 SHEET 1 AA3 7 LEU B 45 GLN B 46 0 SHEET 2 AA3 7 THR B 51 GLN B 53 -1 O GLN B 53 N LEU B 45 SHEET 3 AA3 7 LEU B 62 THR B 66 -1 O LEU B 63 N TRP B 52 SHEET 4 AA3 7 GLY B 69 LEU B 73 -1 O VAL B 71 N VAL B 64 SHEET 5 AA3 7 LEU B 98 LEU B 102 1 O LEU B 100 N LEU B 72 SHEET 6 AA3 7 LYS B 124 ALA B 127 1 O LYS B 124 N ILE B 101 SHEET 7 AA3 7 ARG B 158 ILE B 159 1 O ARG B 158 N ALA B 127 SHEET 1 AA4 5 VAL B 165 VAL B 168 0 SHEET 2 AA4 5 ILE B 171 PHE B 177 -1 O PHE B 173 N ILE B 166 SHEET 3 AA4 5 THR B 186 ARG B 194 -1 O ALA B 187 N HIS B 176 SHEET 4 AA4 5 LYS B 197 TYR B 203 -1 O TYR B 203 N TRP B 188 SHEET 5 AA4 5 VAL B 241 LEU B 243 1 O VAL B 241 N ALA B 202 SSBOND 1 CYS A 239 CYS A 267 1555 1555 2.06 SSBOND 2 CYS B 239 CYS B 267 1555 1555 2.05 LINK NE2 HIS A 105 ZN ZN A 401 1555 1555 2.16 LINK ND1 HIS A 107 ZN ZN A 401 1555 1555 2.09 LINK OD2 ASP A 109 ZN ZN A 402 1555 1555 1.98 LINK NE2 HIS A 110 ZN ZN A 402 1555 1555 2.01 LINK NE2 HIS A 181 ZN ZN A 401 1555 1555 2.04 LINK NE2 HIS A 246 ZN ZN A 402 1555 1555 2.05 LINK ZN ZN A 401 N5 AL3B A 403 1555 1555 2.05 LINK ZN ZN A 401 N5 BL3B A 403 1555 1555 1.98 LINK ZN ZN A 402 S6 AL3B A 403 1555 1555 2.21 LINK ZN ZN A 402 S6 BL3B A 403 1555 1555 2.26 LINK NE2 HIS B 105 ZN ZN B 401 1555 1555 2.11 LINK ND1 HIS B 107 ZN ZN B 401 1555 1555 2.11 LINK OD2 ASP B 109 ZN ZN B 402 1555 1555 1.97 LINK NE2 HIS B 110 ZN ZN B 402 1555 1555 2.01 LINK NE2 HIS B 181 ZN ZN B 401 1555 1555 2.07 LINK NE2 HIS B 246 ZN ZN B 402 1555 1555 2.01 LINK ZN ZN B 401 N5 AL3B B 403 1555 1555 2.07 LINK ZN ZN B 401 N5 BL3B B 403 1555 1555 1.91 LINK ZN ZN B 402 S6 AL3B B 403 1555 1555 2.29 LINK ZN ZN B 402 S6 BL3B B 403 1555 1555 2.27 SITE 1 AC1 4 HIS A 105 HIS A 107 HIS A 181 L3B A 403 SITE 1 AC2 4 ASP A 109 HIS A 110 HIS A 246 L3B A 403 SITE 1 AC3 15 TYR A 32 HIS A 107 ASP A 109 HIS A 110 SITE 2 AC3 15 ASP A 142 PHE A 145 ILE A 149 HIS A 181 SITE 3 AC3 15 SER A 206 TYR A 212 HIS A 246 ZN A 401 SITE 4 AC3 15 ZN A 402 HOH A 542 HOH A 582 SITE 1 AC4 9 ALA A 258 ARG A 259 ALA A 260 GLY A 261 SITE 2 AC4 9 ALA A 262 HOH A 559 HOH A 563 ARG B 235 SITE 3 AC4 9 LYS B 268 SITE 1 AC5 4 ARG A 158 ILE A 166 THR A 167 HOH A 575 SITE 1 AC6 4 TRP A 52 ARG A 91 HOH A 515 HOH A 553 SITE 1 AC7 4 HIS B 105 HIS B 107 HIS B 181 L3B B 403 SITE 1 AC8 4 ASP B 109 HIS B 110 HIS B 246 L3B B 403 SITE 1 AC9 14 TYR B 32 HIS B 105 HIS B 107 ASP B 109 SITE 2 AC9 14 HIS B 110 PHE B 145 ILE B 149 HIS B 181 SITE 3 AC9 14 SER B 206 TYR B 212 HIS B 246 ZN B 401 SITE 4 AC9 14 ZN B 402 HOH B 505 SITE 1 AD1 6 ARG B 158 ILE B 166 THR B 167 HOH B 538 SITE 2 AD1 6 HOH B 612 HOH B 644 CRYST1 105.040 105.040 196.990 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009520 0.005496 0.000000 0.00000 SCALE2 0.000000 0.010993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005076 0.00000