HEADER HYDROLASE 14-SEP-15 5DQ6 TITLE MUS MUSCULUS A20 OTU DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR ALPHA-INDUCED PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: OTU DOMAIN (UNP RESIDUES 1-360); COMPND 5 SYNONYM: TNF ALPHA-INDUCED PROTEIN 3,PUTATIVE DNA-BINDING PROTEIN COMPND 6 A20,ZINC FINGER PROTEIN A20; COMPND 7 EC: 3.4.19.12,6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TNFAIP3, TNFIP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS A20 OTU, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.D.MABBITT,C.J.JACKSON REVDAT 2 27-SEP-23 5DQ6 1 REMARK REVDAT 1 30-DEC-15 5DQ6 0 JRNL AUTH P.D.MABBITT,C.J.JACKSON JRNL TITL MUS MUSCULUS A20 OTU DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.650 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 19279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.590 REMARK 3 FREE R VALUE TEST SET COUNT : 1077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.6985 - 5.5503 0.90 2242 103 0.1962 0.2199 REMARK 3 2 5.5503 - 4.4282 0.89 2217 137 0.2324 0.2970 REMARK 3 3 4.4282 - 3.8751 0.89 2233 138 0.2616 0.2769 REMARK 3 4 3.8751 - 3.5239 0.91 2273 138 0.3054 0.3498 REMARK 3 5 3.5239 - 3.2730 0.90 2248 150 0.3159 0.3917 REMARK 3 6 3.2730 - 3.0811 0.91 2264 158 0.3012 0.3202 REMARK 3 7 3.0811 - 2.9275 0.93 2321 126 0.3232 0.3868 REMARK 3 8 2.9275 - 2.8006 0.93 2325 127 0.3201 0.3245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5633 REMARK 3 ANGLE : 1.434 7607 REMARK 3 CHIRALITY : 0.060 835 REMARK 3 PLANARITY : 0.007 965 REMARK 3 DIHEDRAL : 16.195 2144 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8715 -9.1361 -14.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 1.7565 REMARK 3 T33: 0.8102 T12: -0.3068 REMARK 3 T13: -0.1678 T23: 0.3094 REMARK 3 L TENSOR REMARK 3 L11: 2.3962 L22: 8.2506 REMARK 3 L33: 6.4704 L12: 0.0896 REMARK 3 L13: 0.5057 L23: -3.8537 REMARK 3 S TENSOR REMARK 3 S11: 0.2224 S12: -0.3816 S13: -0.3645 REMARK 3 S21: -0.1561 S22: -0.0017 S23: -1.3411 REMARK 3 S31: -0.8107 S32: 1.6949 S33: 0.3305 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8019 -15.0354 -8.3584 REMARK 3 T TENSOR REMARK 3 T11: 0.5013 T22: 0.8138 REMARK 3 T33: 0.7094 T12: 0.0472 REMARK 3 T13: -0.0324 T23: 0.2050 REMARK 3 L TENSOR REMARK 3 L11: 4.2386 L22: 9.4720 REMARK 3 L33: 6.3276 L12: -0.2159 REMARK 3 L13: 0.2048 L23: -1.5570 REMARK 3 S TENSOR REMARK 3 S11: 0.1326 S12: 0.1988 S13: -0.2804 REMARK 3 S21: 0.6868 S22: -1.2354 S23: 0.8396 REMARK 3 S31: -0.1899 S32: 1.8102 S33: 0.4679 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4322 -33.5523 -12.3534 REMARK 3 T TENSOR REMARK 3 T11: 1.0697 T22: 0.7711 REMARK 3 T33: 1.0070 T12: 0.4381 REMARK 3 T13: -0.3636 T23: -0.1181 REMARK 3 L TENSOR REMARK 3 L11: 5.4361 L22: 7.0123 REMARK 3 L33: 9.0206 L12: 5.5412 REMARK 3 L13: -1.9532 L23: -2.2786 REMARK 3 S TENSOR REMARK 3 S11: 0.1420 S12: 0.7576 S13: -0.1779 REMARK 3 S21: -0.4372 S22: -0.9891 S23: 0.9769 REMARK 3 S31: 0.0662 S32: -0.0942 S33: 0.7180 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5397 -20.5063 0.2763 REMARK 3 T TENSOR REMARK 3 T11: 0.8929 T22: 1.1844 REMARK 3 T33: 0.7668 T12: -0.1180 REMARK 3 T13: -0.1510 T23: 0.3557 REMARK 3 L TENSOR REMARK 3 L11: 9.1578 L22: 6.6166 REMARK 3 L33: 6.9572 L12: -1.2034 REMARK 3 L13: -0.8956 L23: -2.0497 REMARK 3 S TENSOR REMARK 3 S11: 0.6485 S12: -0.5457 S13: -0.9305 REMARK 3 S21: 1.0053 S22: -1.5142 S23: -0.5388 REMARK 3 S31: -0.7951 S32: 1.7260 S33: 0.7844 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3612 -21.1567 5.7466 REMARK 3 T TENSOR REMARK 3 T11: 1.0720 T22: 1.5547 REMARK 3 T33: 1.0965 T12: -0.2349 REMARK 3 T13: -0.1946 T23: 0.4155 REMARK 3 L TENSOR REMARK 3 L11: -0.3431 L22: 2.1021 REMARK 3 L33: 1.3539 L12: 0.0948 REMARK 3 L13: 0.4675 L23: 0.5011 REMARK 3 S TENSOR REMARK 3 S11: 0.3381 S12: -0.4052 S13: -0.1367 REMARK 3 S21: 1.2053 S22: -0.6987 S23: -0.7356 REMARK 3 S31: -0.2889 S32: 0.4586 S33: 0.5343 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4691 10.0856 -12.1270 REMARK 3 T TENSOR REMARK 3 T11: 1.7542 T22: 1.4013 REMARK 3 T33: 0.7240 T12: -0.4832 REMARK 3 T13: -0.7006 T23: 0.2052 REMARK 3 L TENSOR REMARK 3 L11: 5.0886 L22: 4.4979 REMARK 3 L33: 2.1240 L12: 3.0856 REMARK 3 L13: -0.3711 L23: -0.4152 REMARK 3 S TENSOR REMARK 3 S11: 0.5470 S12: -1.4704 S13: 0.7474 REMARK 3 S21: 1.8984 S22: -1.8880 S23: 0.1187 REMARK 3 S31: 0.1780 S32: 0.3319 S33: 0.4576 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7895 3.0497 11.9352 REMARK 3 T TENSOR REMARK 3 T11: 0.8651 T22: 0.7226 REMARK 3 T33: 0.8607 T12: -0.1289 REMARK 3 T13: 0.2537 T23: -0.1057 REMARK 3 L TENSOR REMARK 3 L11: 7.6069 L22: 6.2194 REMARK 3 L33: 5.9531 L12: -2.6166 REMARK 3 L13: -2.0204 L23: 0.4081 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: 0.6565 S13: -0.9647 REMARK 3 S21: 0.3637 S22: -0.5979 S23: 1.2634 REMARK 3 S31: 0.5554 S32: -0.7727 S33: 0.4727 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1570 -7.8001 15.2524 REMARK 3 T TENSOR REMARK 3 T11: 1.8251 T22: 1.1929 REMARK 3 T33: 0.6942 T12: 0.2563 REMARK 3 T13: 0.3016 T23: -0.2393 REMARK 3 L TENSOR REMARK 3 L11: 6.3374 L22: 3.5580 REMARK 3 L33: 1.2618 L12: -1.6414 REMARK 3 L13: -2.0072 L23: 1.4007 REMARK 3 S TENSOR REMARK 3 S11: -1.4456 S12: -1.5710 S13: -0.7273 REMARK 3 S21: 1.0998 S22: 0.5502 S23: -0.6613 REMARK 3 S31: 1.3772 S32: 1.0728 S33: 0.4068 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8124 -0.2539 4.1701 REMARK 3 T TENSOR REMARK 3 T11: 1.0406 T22: 0.6739 REMARK 3 T33: 0.6257 T12: -0.2250 REMARK 3 T13: 0.1345 T23: -0.1369 REMARK 3 L TENSOR REMARK 3 L11: 9.9334 L22: 5.5883 REMARK 3 L33: 4.9477 L12: -2.6000 REMARK 3 L13: -0.2853 L23: 0.7006 REMARK 3 S TENSOR REMARK 3 S11: -0.1931 S12: 0.8317 S13: -0.0413 REMARK 3 S21: 0.3106 S22: -0.2795 S23: 0.0413 REMARK 3 S31: 0.6019 S32: -0.7023 S33: 0.5254 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19279 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 37.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06639 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3ZJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M NACL, 0.1 M MES, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.45400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.72700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 153 REMARK 465 GLU A 154 REMARK 465 THR A 155 REMARK 465 GLY A 156 REMARK 465 LEU A 157 REMARK 465 CYS A 158 REMARK 465 TYR A 159 REMARK 465 ASP A 160 REMARK 465 THR A 161 REMARK 465 ARG A 162 REMARK 465 SER A 220 REMARK 465 GLY A 221 REMARK 465 SER A 222 REMARK 465 ASN A 223 REMARK 465 PHE A 224 REMARK 465 ALA A 225 REMARK 465 ASP A 265 REMARK 465 SER A 266 REMARK 465 GLY A 267 REMARK 465 PRO A 268 REMARK 465 SER A 360 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 VAL B 153 REMARK 465 GLU B 154 REMARK 465 THR B 155 REMARK 465 GLY B 156 REMARK 465 LEU B 157 REMARK 465 CYS B 158 REMARK 465 TYR B 159 REMARK 465 ASP B 160 REMARK 465 THR B 161 REMARK 465 ARG B 162 REMARK 465 ASN B 163 REMARK 465 TRP B 164 REMARK 465 LEU B 218 REMARK 465 GLU B 219 REMARK 465 SER B 220 REMARK 465 GLY B 221 REMARK 465 SER B 222 REMARK 465 ASN B 223 REMARK 465 PHE B 224 REMARK 465 ALA B 225 REMARK 465 PRO B 226 REMARK 465 GLY B 316 REMARK 465 TRP B 317 REMARK 465 GLU B 358 REMARK 465 ASN B 359 REMARK 465 SER B 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 114 O HOH A 401 1.82 REMARK 500 O HIS B 319 N THR B 321 2.04 REMARK 500 O GLU A 23 O HOH A 402 2.04 REMARK 500 NH2 ARG A 245 O LEU A 307 2.10 REMARK 500 O LYS A 329 O HOH A 403 2.10 REMARK 500 O TRP A 142 OG SER A 146 2.14 REMARK 500 NZ LYS B 91 O HOH B 401 2.17 REMARK 500 O ASP A 318 N GLY A 320 2.18 REMARK 500 O TRP B 142 OG SER B 146 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 266 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 18.28 -143.59 REMARK 500 LYS A 41 -74.66 -79.51 REMARK 500 ASP A 117 45.40 -83.78 REMARK 500 GLN A 143 30.58 -86.94 REMARK 500 GLN A 150 -66.57 60.69 REMARK 500 GLU A 151 -18.94 75.05 REMARK 500 ALA A 175 25.50 -75.85 REMARK 500 PRO A 180 -159.40 -84.38 REMARK 500 ARG A 183 -71.64 -54.87 REMARK 500 GLU A 192 -154.42 -140.52 REMARK 500 ARG A 204 58.28 36.66 REMARK 500 ILE A 210 76.37 -111.26 REMARK 500 ALA A 240 -134.33 55.91 REMARK 500 CYS A 243 174.54 -59.25 REMARK 500 ARG A 245 39.40 -98.03 REMARK 500 SER A 254 -100.33 -97.05 REMARK 500 LEU A 263 -168.95 -123.27 REMARK 500 ARG A 280 28.68 46.12 REMARK 500 LYS A 304 -43.16 60.24 REMARK 500 PRO A 313 79.66 -67.37 REMARK 500 ASP A 318 -132.27 49.86 REMARK 500 HIS A 319 -52.14 41.21 REMARK 500 SER B 13 -35.74 -34.20 REMARK 500 ASP B 28 47.65 -80.47 REMARK 500 THR B 33 73.38 -112.41 REMARK 500 ASN B 34 29.81 -149.17 REMARK 500 LYS B 41 -79.96 -72.44 REMARK 500 ARG B 90 172.28 -59.59 REMARK 500 GLN B 150 -164.56 -172.99 REMARK 500 PRO B 180 -70.00 -90.62 REMARK 500 ARG B 204 62.07 37.31 REMARK 500 MET B 214 48.39 -80.77 REMARK 500 ARG B 216 -72.63 -96.03 REMARK 500 LYS B 228 69.91 -104.77 REMARK 500 ALA B 240 -123.40 36.30 REMARK 500 ARG B 245 38.70 -84.50 REMARK 500 SER B 254 83.21 50.39 REMARK 500 GLN B 255 8.64 58.34 REMARK 500 LEU B 260 71.76 -110.10 REMARK 500 LYS B 264 65.72 -154.28 REMARK 500 ASP B 279 -174.13 -68.34 REMARK 500 PHE B 290 60.28 67.65 REMARK 500 GLU B 300 -10.30 67.31 REMARK 500 LYS B 304 -32.13 71.53 REMARK 500 MET B 310 118.78 -167.10 REMARK 500 PRO B 313 79.33 -64.63 REMARK 500 ALA B 333 91.00 -68.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 5DQ6 A 1 360 UNP Q60769 TNAP3_MOUSE 1 360 DBREF 5DQ6 B 1 360 UNP Q60769 TNAP3_MOUSE 1 360 SEQRES 1 A 360 MET ALA GLU GLN LEU LEU PRO GLN ALA LEU TYR LEU SER SEQRES 2 A 360 ASN MET ARG LYS ALA VAL LYS ILE ARG GLU ARG THR PRO SEQRES 3 A 360 GLU ASP ILE PHE LYS PRO THR ASN GLY ILE ILE TYR HIS SEQRES 4 A 360 PHE LYS THR MET HIS ARG TYR THR LEU GLU MET PHE ARG SEQRES 5 A 360 THR CYS GLN PHE CYS PRO GLN PHE ARG GLU ILE ILE HIS SEQRES 6 A 360 LYS ALA LEU ILE ASP ARG SER VAL GLN ALA SER LEU GLU SEQRES 7 A 360 SER GLN LYS LYS LEU ASN TRP CYS ARG GLU VAL ARG LYS SEQRES 8 A 360 LEU VAL ALA LEU LYS THR ASN GLY ASP GLY ASN CYS LEU SEQRES 9 A 360 MET HIS ALA ALA CYS GLN TYR MET TRP GLY VAL GLN ASP SEQRES 10 A 360 THR ASP LEU VAL LEU ARG LYS ALA LEU CYS SER THR LEU SEQRES 11 A 360 LYS GLU THR ASP THR ARG ASN PHE LYS PHE ARG TRP GLN SEQRES 12 A 360 LEU GLU SER LEU LYS SER GLN GLU PHE VAL GLU THR GLY SEQRES 13 A 360 LEU CYS TYR ASP THR ARG ASN TRP ASN ASP GLU TRP ASP SEQRES 14 A 360 ASN LEU VAL LYS MET ALA SER ALA ASP THR PRO ALA ALA SEQRES 15 A 360 ARG SER GLY LEU GLN TYR ASN SER LEU GLU GLU ILE HIS SEQRES 16 A 360 ILE PHE VAL LEU SER ASN ILE LEU ARG ARG PRO ILE ILE SEQRES 17 A 360 VAL ILE SER ASP LYS MET LEU ARG SER LEU GLU SER GLY SEQRES 18 A 360 SER ASN PHE ALA PRO LEU LYS VAL GLY GLY ILE TYR LEU SEQRES 19 A 360 PRO LEU HIS TRP PRO ALA GLN GLU CYS TYR ARG TYR PRO SEQRES 20 A 360 ILE VAL LEU GLY TYR ASP SER GLN HIS PHE VAL PRO LEU SEQRES 21 A 360 VAL THR LEU LYS ASP SER GLY PRO GLU LEU ARG ALA VAL SEQRES 22 A 360 PRO LEU VAL ASN ARG ASP ARG GLY ARG PHE GLU ASP LEU SEQRES 23 A 360 LYS VAL HIS PHE LEU THR ASP PRO GLU ASN GLU MET LYS SEQRES 24 A 360 GLU LYS LEU LEU LYS GLU TYR LEU ILE VAL MET GLU ILE SEQRES 25 A 360 PRO VAL GLN GLY TRP ASP HIS GLY THR THR HIS LEU ILE SEQRES 26 A 360 ASN ALA ALA LYS LEU ASP GLU ALA ASN LEU PRO LYS GLU SEQRES 27 A 360 ILE ASN LEU VAL ASP ASP TYR PHE GLU LEU VAL GLN HIS SEQRES 28 A 360 GLU TYR LYS LYS TRP GLN GLU ASN SER SEQRES 1 B 360 MET ALA GLU GLN LEU LEU PRO GLN ALA LEU TYR LEU SER SEQRES 2 B 360 ASN MET ARG LYS ALA VAL LYS ILE ARG GLU ARG THR PRO SEQRES 3 B 360 GLU ASP ILE PHE LYS PRO THR ASN GLY ILE ILE TYR HIS SEQRES 4 B 360 PHE LYS THR MET HIS ARG TYR THR LEU GLU MET PHE ARG SEQRES 5 B 360 THR CYS GLN PHE CYS PRO GLN PHE ARG GLU ILE ILE HIS SEQRES 6 B 360 LYS ALA LEU ILE ASP ARG SER VAL GLN ALA SER LEU GLU SEQRES 7 B 360 SER GLN LYS LYS LEU ASN TRP CYS ARG GLU VAL ARG LYS SEQRES 8 B 360 LEU VAL ALA LEU LYS THR ASN GLY ASP GLY ASN CYS LEU SEQRES 9 B 360 MET HIS ALA ALA CYS GLN TYR MET TRP GLY VAL GLN ASP SEQRES 10 B 360 THR ASP LEU VAL LEU ARG LYS ALA LEU CYS SER THR LEU SEQRES 11 B 360 LYS GLU THR ASP THR ARG ASN PHE LYS PHE ARG TRP GLN SEQRES 12 B 360 LEU GLU SER LEU LYS SER GLN GLU PHE VAL GLU THR GLY SEQRES 13 B 360 LEU CYS TYR ASP THR ARG ASN TRP ASN ASP GLU TRP ASP SEQRES 14 B 360 ASN LEU VAL LYS MET ALA SER ALA ASP THR PRO ALA ALA SEQRES 15 B 360 ARG SER GLY LEU GLN TYR ASN SER LEU GLU GLU ILE HIS SEQRES 16 B 360 ILE PHE VAL LEU SER ASN ILE LEU ARG ARG PRO ILE ILE SEQRES 17 B 360 VAL ILE SER ASP LYS MET LEU ARG SER LEU GLU SER GLY SEQRES 18 B 360 SER ASN PHE ALA PRO LEU LYS VAL GLY GLY ILE TYR LEU SEQRES 19 B 360 PRO LEU HIS TRP PRO ALA GLN GLU CYS TYR ARG TYR PRO SEQRES 20 B 360 ILE VAL LEU GLY TYR ASP SER GLN HIS PHE VAL PRO LEU SEQRES 21 B 360 VAL THR LEU LYS ASP SER GLY PRO GLU LEU ARG ALA VAL SEQRES 22 B 360 PRO LEU VAL ASN ARG ASP ARG GLY ARG PHE GLU ASP LEU SEQRES 23 B 360 LYS VAL HIS PHE LEU THR ASP PRO GLU ASN GLU MET LYS SEQRES 24 B 360 GLU LYS LEU LEU LYS GLU TYR LEU ILE VAL MET GLU ILE SEQRES 25 B 360 PRO VAL GLN GLY TRP ASP HIS GLY THR THR HIS LEU ILE SEQRES 26 B 360 ASN ALA ALA LYS LEU ASP GLU ALA ASN LEU PRO LYS GLU SEQRES 27 B 360 ILE ASN LEU VAL ASP ASP TYR PHE GLU LEU VAL GLN HIS SEQRES 28 B 360 GLU TYR LYS LYS TRP GLN GLU ASN SER FORMUL 3 HOH *26(H2 O) HELIX 1 AA1 ASN A 14 THR A 25 1 12 HELIX 2 AA2 THR A 42 TYR A 46 5 5 HELIX 3 AA3 CYS A 57 ILE A 69 1 13 HELIX 4 AA4 ASP A 70 SER A 79 1 10 HELIX 5 AA5 ASN A 102 GLY A 114 1 13 HELIX 6 AA6 LEU A 120 THR A 133 1 14 HELIX 7 AA7 THR A 135 SER A 146 1 12 HELIX 8 AA8 ASP A 166 ALA A 175 1 10 HELIX 9 AA9 GLU A 192 ARG A 204 1 13 HELIX 10 AB1 PRO A 239 CYS A 243 5 5 HELIX 11 AB2 THR A 292 MET A 298 1 7 HELIX 12 AB3 MET A 298 LEU A 303 1 6 HELIX 13 AB4 LEU A 341 GLN A 357 1 17 HELIX 14 AB5 ALA B 9 ASN B 14 1 6 HELIX 15 AB6 ASN B 14 THR B 25 1 12 HELIX 16 AB7 THR B 42 TYR B 46 5 5 HELIX 17 AB8 CYS B 57 ILE B 69 1 13 HELIX 18 AB9 ASP B 70 GLN B 80 1 11 HELIX 19 AC1 ASN B 102 TRP B 113 1 12 HELIX 20 AC2 LEU B 120 THR B 133 1 14 HELIX 21 AC3 THR B 135 GLN B 143 1 9 HELIX 22 AC4 ASP B 166 LYS B 173 1 8 HELIX 23 AC5 GLU B 192 LEU B 203 1 12 HELIX 24 AC6 PRO B 239 CYS B 243 5 5 HELIX 25 AC7 ASP B 293 GLU B 297 5 5 HELIX 26 AC8 LYS B 301 TYR B 306 1 6 HELIX 27 AC9 PRO B 336 ILE B 339 5 4 HELIX 28 AD1 ASN B 340 LYS B 355 1 16 SHEET 1 AA1 2 ILE A 29 PHE A 30 0 SHEET 2 AA1 2 HIS A 39 PHE A 40 -1 O HIS A 39 N PHE A 30 SHEET 1 AA2 5 VAL A 93 ALA A 94 0 SHEET 2 AA2 5 PHE A 257 VAL A 261 -1 O VAL A 261 N VAL A 93 SHEET 3 AA2 5 ILE A 248 TYR A 252 -1 N GLY A 251 O VAL A 258 SHEET 4 AA2 5 ILE A 207 VAL A 209 1 N ILE A 208 O ILE A 248 SHEET 5 AA2 5 GLY A 231 TYR A 233 -1 O TYR A 233 N ILE A 207 SHEET 1 AA3 2 ALA A 272 PRO A 274 0 SHEET 2 AA3 2 ALA A 327 LYS A 329 -1 O ALA A 328 N VAL A 273 SHEET 1 AA4 2 VAL A 276 ASP A 279 0 SHEET 2 AA4 2 ARG A 282 ASP A 285 -1 O GLU A 284 N ASN A 277 SHEET 1 AA5 2 ILE A 312 GLN A 315 0 SHEET 2 AA5 2 THR A 322 ILE A 325 -1 O ILE A 325 N ILE A 312 SHEET 1 AA6 2 ILE B 29 PHE B 30 0 SHEET 2 AA6 2 HIS B 39 PHE B 40 -1 O HIS B 39 N PHE B 30 SHEET 1 AA7 5 VAL B 93 ALA B 94 0 SHEET 2 AA7 5 PHE B 257 VAL B 261 -1 O VAL B 261 N VAL B 93 SHEET 3 AA7 5 ILE B 248 TYR B 252 -1 N VAL B 249 O LEU B 260 SHEET 4 AA7 5 ILE B 207 SER B 211 1 N ILE B 208 O ILE B 248 SHEET 5 AA7 5 GLY B 231 TYR B 233 -1 O GLY B 231 N VAL B 209 SHEET 1 AA8 2 ALA B 272 PRO B 274 0 SHEET 2 AA8 2 ALA B 327 LYS B 329 -1 O ALA B 328 N VAL B 273 SHEET 1 AA9 2 VAL B 276 ARG B 278 0 SHEET 2 AA9 2 PHE B 283 ASP B 285 -1 N GLU B 284 O ASN B 277 SHEET 1 AB1 2 ILE B 312 VAL B 314 0 SHEET 2 AB1 2 HIS B 323 ILE B 325 -1 N HIS B 323 O VAL B 314 CRYST1 71.340 71.340 143.181 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014017 0.008093 0.000000 0.00000 SCALE2 0.000000 0.016186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006984 0.00000