HEADER OXIDOREDUCTASE 15-SEP-15 5DQN TITLE POLYETHYLENE 600-BOUND FORM OF P450 CYP125A3 MUTANT FROM MYOBACTERIUM TITLE 2 SMEGMATIS - W83Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 CYP125; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.13.151; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: CYP125, MSMEI_5834; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: DH5(ALPHA); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCW KEYWDS OXIDOREDUCTASE, CHOLESTEROL METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.ORTIZ DE MONTELLANO,D.J.FRANK,C.A.WADDLING REVDAT 5 27-SEP-23 5DQN 1 REMARK REVDAT 4 11-DEC-19 5DQN 1 REMARK REVDAT 3 20-SEP-17 5DQN 1 JRNL REMARK REVDAT 2 09-DEC-15 5DQN 1 JRNL REVDAT 1 18-NOV-15 5DQN 0 JRNL AUTH D.J.FRANK,C.A.WADDLING,M.LA,P.R.ORTIZ DE MONTELLANO JRNL TITL CYTOCHROME P450 125A4, THE THIRD CHOLESTEROL C-26 JRNL TITL 2 HYDROXYLASE FROM MYCOBACTERIUM SMEGMATIS. JRNL REF BIOCHEMISTRY V. 54 6909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26522442 JRNL DOI 10.1021/ACS.BIOCHEM.5B01029 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 3099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 80.2977 - 6.3375 1.00 2742 153 0.1438 0.1953 REMARK 3 2 6.3375 - 5.0305 1.00 2745 149 0.1579 0.2541 REMARK 3 3 5.0305 - 4.3947 1.00 2724 137 0.1237 0.1265 REMARK 3 4 4.3947 - 3.9929 1.00 2756 135 0.1232 0.1568 REMARK 3 5 3.9929 - 3.7067 1.00 2757 136 0.1351 0.1848 REMARK 3 6 3.7067 - 3.4881 1.00 2732 147 0.1499 0.1837 REMARK 3 7 3.4881 - 3.3134 1.00 2740 161 0.1512 0.1915 REMARK 3 8 3.3134 - 3.1692 1.00 2783 133 0.1901 0.2253 REMARK 3 9 3.1692 - 3.0472 1.00 2732 123 0.1830 0.2258 REMARK 3 10 3.0472 - 2.9420 0.99 2709 129 0.1773 0.2050 REMARK 3 11 2.9420 - 2.8500 1.00 2785 126 0.1823 0.2512 REMARK 3 12 2.8500 - 2.7686 1.00 2725 149 0.1852 0.2384 REMARK 3 13 2.7686 - 2.6957 0.99 2736 136 0.1923 0.2385 REMARK 3 14 2.6957 - 2.6299 0.99 2732 146 0.2093 0.3055 REMARK 3 15 2.6299 - 2.5701 0.99 2773 150 0.2147 0.2369 REMARK 3 16 2.5701 - 2.5154 0.99 2719 134 0.2299 0.2720 REMARK 3 17 2.5154 - 2.4651 0.99 2680 160 0.2299 0.2443 REMARK 3 18 2.4651 - 2.4186 0.99 2747 137 0.2609 0.3204 REMARK 3 19 2.4186 - 2.3754 0.99 2720 120 0.2654 0.3417 REMARK 3 20 2.3754 - 2.3351 0.99 2688 160 0.2825 0.3183 REMARK 3 21 2.3351 - 2.2975 0.99 2779 138 0.3042 0.3556 REMARK 3 22 2.2975 - 2.2621 0.93 2551 140 0.3329 0.3472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3421 REMARK 3 ANGLE : 0.799 4659 REMARK 3 CHIRALITY : 0.030 489 REMARK 3 PLANARITY : 0.004 619 REMARK 3 DIHEDRAL : 13.049 1278 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4743 -20.4213 -2.1880 REMARK 3 T TENSOR REMARK 3 T11: 0.3107 T22: 0.3669 REMARK 3 T33: 0.3366 T12: -0.0214 REMARK 3 T13: -0.0095 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.7953 L22: 2.7733 REMARK 3 L33: 2.5947 L12: 0.4403 REMARK 3 L13: -0.6309 L23: -1.0566 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.0946 S13: -0.1169 REMARK 3 S21: -0.0021 S22: 0.0485 S23: 0.0752 REMARK 3 S31: 0.1316 S32: -0.0888 S33: -0.0766 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8464 7.8407 0.0708 REMARK 3 T TENSOR REMARK 3 T11: 0.5571 T22: 0.5135 REMARK 3 T33: 0.7561 T12: -0.1638 REMARK 3 T13: 0.0509 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 3.0456 L22: 4.1048 REMARK 3 L33: 3.2890 L12: 0.9905 REMARK 3 L13: 2.2940 L23: 3.1867 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: 0.2193 S13: 0.4716 REMARK 3 S21: -0.1307 S22: 0.0507 S23: -0.4876 REMARK 3 S31: -0.9413 S32: 0.7942 S33: -0.0352 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4944 2.1845 -0.7351 REMARK 3 T TENSOR REMARK 3 T11: 0.5033 T22: 0.4293 REMARK 3 T33: 0.4567 T12: -0.0715 REMARK 3 T13: 0.0708 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 2.7584 L22: 2.1188 REMARK 3 L33: 2.5858 L12: -0.8130 REMARK 3 L13: 1.4882 L23: -0.3168 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.1917 S13: 0.2359 REMARK 3 S21: 0.0626 S22: -0.0228 S23: -0.0626 REMARK 3 S31: -0.3964 S32: -0.0568 S33: 0.0087 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3354 -13.9109 1.7426 REMARK 3 T TENSOR REMARK 3 T11: 0.3328 T22: 0.4713 REMARK 3 T33: 0.3494 T12: -0.0063 REMARK 3 T13: -0.0092 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.0639 L22: 2.2497 REMARK 3 L33: 1.9659 L12: 0.4135 REMARK 3 L13: -0.4483 L23: -0.2122 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.1718 S13: -0.0054 REMARK 3 S21: 0.1403 S22: 0.0036 S23: -0.3483 REMARK 3 S31: -0.0789 S32: 0.4623 S33: -0.0523 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11585 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.0.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 80.322 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04274 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4APY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL CONTENTS (JCSG CORE-III SCREEN, REMARK 280 G4): 0.1M PHOSPHATE-CITRATE BUFFER, PH 4.2 PEG 600, 40% V/V DROP REMARK 280 CONTENTS: 90% WELL CONTENTS (SEE ABOVE) 10% SILVER BULLETS REMARK 280 SCREEN, B18: - 0.33% W/V 2,6-NAPHTHALENEDISULFONIC ACID DISODIUM REMARK 280 SALT - 0.33% W/V 2-AMINOBENZENEDISULFONIC ACID - 0.33% W/V M- REMARK 280 BENZENEDISULFONIC ACID DISODIUM SALT 0.02M HEPES SODIUM, PH 6.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.41050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 54.41050 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.40450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.41050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.70225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.41050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.10675 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.41050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.41050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.40450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.41050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 89.10675 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.41050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.70225 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 412 REMARK 465 LYS A 413 REMARK 465 ALA A 414 REMARK 465 SER A 415 REMARK 465 VAL A 416 REMARK 465 SER A 417 REMARK 465 GLY A 418 REMARK 465 ALA A 419 REMARK 465 PRO A 420 REMARK 465 GLY A 421 REMARK 465 THR A 422 REMARK 465 CYS A 423 REMARK 465 PRO A 424 REMARK 465 VAL A 425 REMARK 465 ALA A 426 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 681 O HOH A 684 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 68 59.31 -98.58 REMARK 500 VAL A 153 -50.84 -128.97 REMARK 500 ALA A 185 -146.13 -123.91 REMARK 500 GLU A 187 -51.21 -161.43 REMARK 500 ASN A 253 -77.83 -103.77 REMARK 500 ASN A 253 -77.55 -103.77 REMARK 500 THR A 294 64.75 35.03 REMARK 500 PRO A 348 47.80 -79.71 REMARK 500 MET A 381 58.85 -155.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 360 SG REMARK 620 2 HEM A 501 NA 102.2 REMARK 620 3 HEM A 501 NB 91.1 90.2 REMARK 620 4 HEM A 501 NC 88.6 169.3 89.2 REMARK 620 5 HEM A 501 ND 97.1 88.4 171.7 90.7 REMARK 620 6 1PE A 505 OH2 169.3 67.2 90.0 102.1 82.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4APY RELATED DB: PDB REMARK 900 4APY IS THE NATIVE FORM OF THIS PROTEIN DBREF 5DQN A 1 426 UNP I7G9K1 I7G9K1_MYCS2 9 434 SEQADV 5DQN TYR A 83 UNP I7G9K1 TRP 91 ENGINEERED MUTATION SEQRES 1 A 426 MET PRO THR PRO ASN ILE PRO SER ASP PHE ASP PHE LEU SEQRES 2 A 426 ASP ALA THR LEU ASN LEU GLU ARG LEU PRO VAL GLU GLU SEQRES 3 A 426 LEU ALA GLU LEU ARG LYS SER GLU PRO ILE HIS TRP VAL SEQRES 4 A 426 ASP VAL PRO GLY GLY THR GLY GLY PHE GLY ASP LYS GLY SEQRES 5 A 426 TYR TRP LEU VAL THR LYS HIS ALA ASP VAL LYS GLU VAL SEQRES 6 A 426 SER ARG ARG SER ASP VAL PHE GLY SER SER PRO ASP GLY SEQRES 7 A 426 ALA ILE PRO VAL TYR PRO GLN ASP MET THR ARG GLU ALA SEQRES 8 A 426 VAL ASP LEU GLN ARG ALA VAL LEU LEU ASN MET ASP ALA SEQRES 9 A 426 PRO GLN HIS THR ARG LEU ARG LYS ILE ILE SER ARG GLY SEQRES 10 A 426 PHE THR PRO ARG ALA ILE GLY ARG LEU GLU ASP GLU LEU SEQRES 11 A 426 ARG SER ARG ALA GLN LYS ILE ALA GLN THR ALA ALA ALA SEQRES 12 A 426 GLN GLY ALA GLY ASP PHE VAL GLU GLN VAL SER CYS GLU SEQRES 13 A 426 LEU PRO LEU GLN ALA ILE ALA GLU LEU LEU GLY VAL PRO SEQRES 14 A 426 GLN ASP ASP ARG ASP LYS LEU PHE ARG TRP SER ASN GLU SEQRES 15 A 426 MET THR ALA GLY GLU ASP PRO GLU TYR ALA ASP VAL ASP SEQRES 16 A 426 PRO ALA MET SER SER PHE GLU LEU ILE SER TYR ALA MET SEQRES 17 A 426 LYS MET ALA GLU GLU ARG ALA VAL ASN PRO THR GLU ASP SEQRES 18 A 426 ILE VAL THR LYS LEU ILE GLU ALA ASP ILE ASP GLY GLU SEQRES 19 A 426 LYS LEU SER ASP ASP GLU PHE GLY PHE PHE VAL VAL MET SEQRES 20 A 426 LEU ALA VAL ALA GLY ASN GLU THR THR ARG ASN SER ILE SEQRES 21 A 426 THR HIS GLY MET ILE ALA PHE ALA GLN ASN PRO ASP GLN SEQRES 22 A 426 TRP GLU LEU TYR LYS LYS GLU ARG PRO GLU THR ALA ALA SEQRES 23 A 426 ASP GLU ILE VAL ARG TRP ALA THR PRO VAL SER ALA PHE SEQRES 24 A 426 GLN ARG THR ALA LEU GLU ASP VAL GLU LEU GLY GLY VAL SEQRES 25 A 426 GLN ILE LYS LYS GLY GLN ARG VAL VAL MET SER TYR ARG SEQRES 26 A 426 SER ALA ASN PHE ASP GLU GLU VAL PHE GLU ASP PRO HIS SEQRES 27 A 426 THR PHE ASN ILE LEU ARG SER PRO ASN PRO HIS VAL GLY SEQRES 28 A 426 PHE GLY GLY THR GLY ALA HIS TYR CYS ILE GLY ALA ASN SEQRES 29 A 426 LEU ALA ARG MET THR ILE ASN LEU ILE PHE ASN ALA ILE SEQRES 30 A 426 ALA ASP ASN MET PRO ASP LEU LYS PRO ILE GLY ALA PRO SEQRES 31 A 426 GLU ARG LEU LYS SER GLY TRP LEU ASN GLY ILE LYS HIS SEQRES 32 A 426 TRP GLN VAL ASP TYR THR GLY ALA GLY LYS ALA SER VAL SEQRES 33 A 426 SER GLY ALA PRO GLY THR CYS PRO VAL ALA HET HEM A 501 47 HET PO4 A 502 5 HET PO4 A 503 5 HET CIT A 504 13 HET 1PE A 505 16 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PO4 PHOSPHATE ION HETNAM CIT CITRIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN HEM HEME HETSYN 1PE PEG400 FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 CIT C6 H8 O7 FORMUL 6 1PE C10 H22 O6 FORMUL 7 HOH *86(H2 O) HELIX 1 AA1 ASP A 14 ARG A 21 1 8 HELIX 2 AA2 PRO A 23 GLU A 34 1 12 HELIX 3 AA3 LYS A 58 ARG A 68 1 11 HELIX 4 AA4 THR A 88 ASP A 93 1 6 HELIX 5 AA5 LEU A 94 MET A 102 5 9 HELIX 6 AA6 PRO A 105 SER A 115 1 11 HELIX 7 AA7 ARG A 116 PHE A 118 5 3 HELIX 8 AA8 THR A 119 ARG A 125 1 7 HELIX 9 AA9 LEU A 126 GLY A 145 1 20 HELIX 10 AB1 PHE A 149 VAL A 153 1 5 HELIX 11 AB2 CYS A 155 GLY A 167 1 13 HELIX 12 AB3 PRO A 169 ASP A 171 5 3 HELIX 13 AB4 ASP A 172 MET A 183 1 12 HELIX 14 AB5 ASP A 188 ALA A 192 5 5 HELIX 15 AB6 ASP A 195 ALA A 215 1 21 HELIX 16 AB7 ASP A 221 ILE A 227 1 7 HELIX 17 AB8 SER A 237 GLY A 252 1 16 HELIX 18 AB9 ASN A 253 ASN A 270 1 18 HELIX 19 AC1 ASN A 270 ARG A 281 1 12 HELIX 20 AC2 THR A 284 THR A 294 1 11 HELIX 21 AC3 TYR A 324 ASN A 328 1 5 HELIX 22 AC4 GLY A 362 MET A 381 1 20 SHEET 1 AA1 5 ILE A 36 ASP A 40 0 SHEET 2 AA1 5 GLY A 52 VAL A 56 -1 O TYR A 53 N VAL A 39 SHEET 3 AA1 5 ARG A 319 SER A 323 1 O VAL A 321 N TRP A 54 SHEET 4 AA1 5 ALA A 298 ALA A 303 -1 N PHE A 299 O MET A 322 SHEET 5 AA1 5 PHE A 72 GLY A 73 -1 N GLY A 73 O THR A 302 SHEET 1 AA2 3 ALA A 146 ASP A 148 0 SHEET 2 AA2 3 GLN A 405 ASP A 407 -1 O VAL A 406 N GLY A 147 SHEET 3 AA2 3 LYS A 385 PRO A 386 -1 N LYS A 385 O ASP A 407 SHEET 1 AA3 2 VAL A 307 LEU A 309 0 SHEET 2 AA3 2 VAL A 312 ILE A 314 -1 O ILE A 314 N VAL A 307 SHEET 1 AA4 2 GLU A 391 ARG A 392 0 SHEET 2 AA4 2 ILE A 401 HIS A 403 -1 O LYS A 402 N GLU A 391 LINK SG CYS A 360 FE HEM A 501 1555 1555 2.31 LINK FE HEM A 501 OH2 1PE A 505 1555 1555 2.07 CISPEP 1 ALA A 104 PRO A 105 0 3.68 CISPEP 2 SER A 345 PRO A 346 0 1.72 SITE 1 AC1 29 ALA A 79 LEU A 99 LEU A 100 HIS A 107 SITE 2 AC1 29 ARG A 111 LEU A 248 ALA A 251 GLY A 252 SITE 3 AC1 29 THR A 255 THR A 256 PHE A 299 ARG A 301 SITE 4 AC1 29 TYR A 324 GLY A 351 PHE A 352 GLY A 353 SITE 5 AC1 29 GLY A 354 ALA A 357 HIS A 358 TYR A 359 SITE 6 AC1 29 CYS A 360 ILE A 361 GLY A 362 LEU A 365 SITE 7 AC1 29 ALA A 366 1PE A 505 HOH A 602 HOH A 604 SITE 8 AC1 29 HOH A 635 SITE 1 AC2 8 VAL A 82 PRO A 84 GLY A 186 GLU A 187 SITE 2 AC2 8 SER A 395 GLY A 396 TRP A 397 HOH A 669 SITE 1 AC3 2 CYS A 155 ASN A 181 SITE 1 AC4 6 LEU A 94 ARG A 96 ALA A 97 MET A 208 SITE 2 AC4 6 GLU A 212 ASP A 238 SITE 1 AC5 6 ILE A 80 GLN A 95 LEU A 100 VAL A 250 SITE 2 AC5 6 ALA A 251 HEM A 501 CRYST1 108.821 108.821 118.809 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009189 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008417 0.00000