HEADER TRANSFERASE 15-SEP-15 5DRC TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE IN TITLE 2 COMPLEX WITH 2-HYDROXY-4-(1H-INDOL-3-YL)-4-OXOBUT-2-ENOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE SYNTHASE G; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.3.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: GLCB, RV1837C, MTCY1A11.06; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-L.HUANG,J.C.SACCHETTINI REVDAT 7 15-NOV-23 5DRC 1 REMARK REVDAT 6 27-SEP-23 5DRC 1 LINK REVDAT 5 01-NOV-17 5DRC 1 REMARK REVDAT 4 27-SEP-17 5DRC 1 REMARK REVDAT 3 11-JAN-17 5DRC 1 JRNL REVDAT 2 26-OCT-16 5DRC 1 JRNL REVDAT 1 28-SEP-16 5DRC 0 JRNL AUTH H.L.HUANG,I.V.KRIEGER,M.K.PARAI,V.B.GAWANDI,J.C.SACCHETTINI JRNL TITL MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE STRUCTURES WITH JRNL TITL 2 FRAGMENTS REVEAL A PORTAL FOR SUBSTRATE/PRODUCT EXCHANGE. JRNL REF J. BIOL. CHEM. V. 291 27421 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27738104 JRNL DOI 10.1074/JBC.M116.750877 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.V.SMITH,C.C.HUANG,A.MICZAK,D.G.RUSSELL,J.C.SACCHETTINI, REMARK 1 AUTH 2 K.HONER ZU BENTRUP REMARK 1 TITL BIOCHEMICAL AND STRUCTURAL STUDIES OF MALATE SYNTHASE FROM REMARK 1 TITL 2 MYCOBACTERIUM TUBERCULOSIS. REMARK 1 REF J.BIOL.CHEM. V. 278 1735 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12393860 REMARK 1 DOI 10.1074/JBC.M209248200 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.V.KRIEGER,J.S.FREUNDLICH,V.B.GAWANDI,J.P.ROBERTS, REMARK 1 AUTH 2 V.B.GAWANDI,Q.SUN,J.L.OWEN,M.T.FRAILE,S.I.HUSS, REMARK 1 AUTH 3 J.L.LAVANDERA,T.R.IOERGER,J.C.SACCHETTINI REMARK 1 TITL STRUCTURE-GUIDED DISCOVERY OF PHENYL-DIKETO ACIDS AS POTENT REMARK 1 TITL 2 INHIBITORS OF M. TUBERCULOSIS MALATE SYNTHASE. REMARK 1 REF CHEM.BIOL. V. 19 1556 2012 REMARK 1 REFN ISSN 1074-5521 REMARK 1 PMID 23261599 REMARK 1 DOI 10.1016/J.CHEMBIOL.2012.09.018 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 33397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7922 - 4.9942 0.97 3162 169 0.1623 0.2046 REMARK 3 2 4.9942 - 3.9648 0.87 2645 159 0.1423 0.2211 REMARK 3 3 3.9648 - 3.4638 0.81 2463 121 0.1654 0.2192 REMARK 3 4 3.4638 - 3.1472 0.81 2422 146 0.1857 0.2740 REMARK 3 5 3.1472 - 2.9217 0.83 2495 121 0.1926 0.2768 REMARK 3 6 2.9217 - 2.7495 0.84 2521 135 0.1956 0.2817 REMARK 3 7 2.7495 - 2.6118 0.87 2599 138 0.1950 0.2999 REMARK 3 8 2.6118 - 2.4981 0.88 2624 123 0.1840 0.3117 REMARK 3 9 2.4981 - 2.4019 0.90 2643 152 0.1775 0.2915 REMARK 3 10 2.4019 - 2.3191 0.91 2704 124 0.1770 0.2507 REMARK 3 11 2.3191 - 2.2465 0.93 2757 142 0.1725 0.2598 REMARK 3 12 2.2465 - 2.1823 0.92 2693 139 0.1748 0.3040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5612 REMARK 3 ANGLE : 1.120 7633 REMARK 3 CHIRALITY : 0.076 868 REMARK 3 PLANARITY : 0.005 1006 REMARK 3 DIHEDRAL : 14.495 2041 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DRC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33410 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 44.783 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03890 REMARK 200 FOR THE DATA SET : 21.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1N8I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, TRIS-HCL, MGCL2, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.48700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.47850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.47850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 168.73050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.47850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.47850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.24350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.47850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.47850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 168.73050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.47850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.47850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.24350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.48700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY GEL FILTRATION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 304 REMARK 465 LYS A 305 REMARK 465 ASP A 306 REMARK 465 GLY A 307 REMARK 465 THR A 308 REMARK 465 ALA A 309 REMARK 465 PHE A 310 REMARK 465 LEU A 311 REMARK 465 VAL A 381 REMARK 465 ASN A 382 REMARK 465 LYS A 728 REMARK 465 PRO A 729 REMARK 465 ALA A 730 REMARK 465 PRO A 731 REMARK 465 SER A 732 REMARK 465 ASP A 733 REMARK 465 ARG A 734 REMARK 465 ALA A 735 REMARK 465 GLY A 736 REMARK 465 ASP A 737 REMARK 465 ASP A 738 REMARK 465 ALA A 739 REMARK 465 ALA A 740 REMARK 465 ARG A 741 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O05 5ER A 806 O HOH A 901 2.13 REMARK 500 NZ LYS A 296 O HOH A 902 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 74 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 67.13 -108.32 REMARK 500 ARG A 70 38.82 -93.27 REMARK 500 VAL A 72 -147.85 -82.90 REMARK 500 ILE A 73 50.47 -107.19 REMARK 500 GLU A 74 -85.91 104.16 REMARK 500 THR A 111 -53.05 -124.80 REMARK 500 LYS A 207 -175.61 -172.78 REMARK 500 SER A 226 61.95 -153.08 REMARK 500 SER A 264 -83.48 -118.05 REMARK 500 GLU A 273 -117.52 -103.12 REMARK 500 ALA A 302 -116.84 -63.39 REMARK 500 ASN A 387 -110.50 -107.77 REMARK 500 GLU A 434 15.69 -143.78 REMARK 500 ARG A 508 -35.89 -131.88 REMARK 500 ALA A 619 141.27 -170.99 REMARK 500 ASP A 624 -155.61 -88.67 REMARK 500 ALA A 726 29.18 -169.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 87 OE1 REMARK 620 2 5ER A 806 O01 165.6 REMARK 620 3 5ER A 806 O05 100.0 81.9 REMARK 620 4 HOH A 934 O 78.7 86.9 97.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 434 OE2 REMARK 620 2 ASP A 462 OD2 88.0 REMARK 620 3 5ER A 805 O03 85.2 92.9 REMARK 620 4 5ER A 805 O05 107.1 163.4 81.9 REMARK 620 5 HOH A 978 O 172.1 87.0 101.2 78.6 REMARK 620 6 HOH A1022 O 86.9 91.1 171.1 96.4 87.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1149 O REMARK 620 2 HOH A1151 O 74.9 REMARK 620 3 HOH A1155 O 81.6 83.4 REMARK 620 4 HOH A1259 O 86.5 161.3 91.7 REMARK 620 5 HOH A1319 O 62.4 76.8 142.2 96.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5ER A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5ER A 806 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DRI RELATED DB: PDB DBREF 5DRC A 1 741 UNP P9WK17 MASZ_MYCTU 1 741 SEQADV 5DRC ALA A 619 UNP P9WK17 CYS 619 ENGINEERED MUTATION SEQRES 1 A 741 MET THR ASP ARG VAL SER VAL GLY ASN LEU ARG ILE ALA SEQRES 2 A 741 ARG VAL LEU TYR ASP PHE VAL ASN ASN GLU ALA LEU PRO SEQRES 3 A 741 GLY THR ASP ILE ASP PRO ASP SER PHE TRP ALA GLY VAL SEQRES 4 A 741 ASP LYS VAL VAL ALA ASP LEU THR PRO GLN ASN GLN ALA SEQRES 5 A 741 LEU LEU ASN ALA ARG ASP GLU LEU GLN ALA GLN ILE ASP SEQRES 6 A 741 LYS TRP HIS ARG ARG ARG VAL ILE GLU PRO ILE ASP MET SEQRES 7 A 741 ASP ALA TYR ARG GLN PHE LEU THR GLU ILE GLY TYR LEU SEQRES 8 A 741 LEU PRO GLU PRO ASP ASP PHE THR ILE THR THR SER GLY SEQRES 9 A 741 VAL ASP ALA GLU ILE THR THR THR ALA GLY PRO GLN LEU SEQRES 10 A 741 VAL VAL PRO VAL LEU ASN ALA ARG PHE ALA LEU ASN ALA SEQRES 11 A 741 ALA ASN ALA ARG TRP GLY SER LEU TYR ASP ALA LEU TYR SEQRES 12 A 741 GLY THR ASP VAL ILE PRO GLU THR ASP GLY ALA GLU LYS SEQRES 13 A 741 GLY PRO THR TYR ASN LYS VAL ARG GLY ASP LYS VAL ILE SEQRES 14 A 741 ALA TYR ALA ARG LYS PHE LEU ASP ASP SER VAL PRO LEU SEQRES 15 A 741 SER SER GLY SER PHE GLY ASP ALA THR GLY PHE THR VAL SEQRES 16 A 741 GLN ASP GLY GLN LEU VAL VAL ALA LEU PRO ASP LYS SER SEQRES 17 A 741 THR GLY LEU ALA ASN PRO GLY GLN PHE ALA GLY TYR THR SEQRES 18 A 741 GLY ALA ALA GLU SER PRO THR SER VAL LEU LEU ILE ASN SEQRES 19 A 741 HIS GLY LEU HIS ILE GLU ILE LEU ILE ASP PRO GLU SER SEQRES 20 A 741 GLN VAL GLY THR THR ASP ARG ALA GLY VAL LYS ASP VAL SEQRES 21 A 741 ILE LEU GLU SER ALA ILE THR THR ILE MET ASP PHE GLU SEQRES 22 A 741 ASP SER VAL ALA ALA VAL ASP ALA ALA ASP LYS VAL LEU SEQRES 23 A 741 GLY TYR ARG ASN TRP LEU GLY LEU ASN LYS GLY ASP LEU SEQRES 24 A 741 ALA ALA ALA VAL ASP LYS ASP GLY THR ALA PHE LEU ARG SEQRES 25 A 741 VAL LEU ASN ARG ASP ARG ASN TYR THR ALA PRO GLY GLY SEQRES 26 A 741 GLY GLN PHE THR LEU PRO GLY ARG SER LEU MET PHE VAL SEQRES 27 A 741 ARG ASN VAL GLY HIS LEU MET THR ASN ASP ALA ILE VAL SEQRES 28 A 741 ASP THR ASP GLY SER GLU VAL PHE GLU GLY ILE MET ASP SEQRES 29 A 741 ALA LEU PHE THR GLY LEU ILE ALA ILE HIS GLY LEU LYS SEQRES 30 A 741 ALA SER ASP VAL ASN GLY PRO LEU ILE ASN SER ARG THR SEQRES 31 A 741 GLY SER ILE TYR ILE VAL LYS PRO LYS MET HIS GLY PRO SEQRES 32 A 741 ALA GLU VAL ALA PHE THR CSO GLU LEU PHE SER ARG VAL SEQRES 33 A 741 GLU ASP VAL LEU GLY LEU PRO GLN ASN THR MET LYS ILE SEQRES 34 A 741 GLY ILE MET ASP GLU GLU ARG ARG THR THR VAL ASN LEU SEQRES 35 A 741 LYS ALA CYS ILE LYS ALA ALA ALA ASP ARG VAL VAL PHE SEQRES 36 A 741 ILE ASN THR GLY PHE LEU ASP ARG THR GLY ASP GLU ILE SEQRES 37 A 741 HIS THR SER MET GLU ALA GLY PRO MET VAL ARG LYS GLY SEQRES 38 A 741 THR MET LYS SER GLN PRO TRP ILE LEU ALA TYR GLU ASP SEQRES 39 A 741 HIS ASN VAL ASP ALA GLY LEU ALA ALA GLY PHE SER GLY SEQRES 40 A 741 ARG ALA GLN VAL GLY LYS GLY MET TRP THR MET THR GLU SEQRES 41 A 741 LEU MET ALA ASP MET VAL GLU THR LYS ILE ALA GLN PRO SEQRES 42 A 741 ARG ALA GLY ALA SER THR ALA TRP VAL PRO SER PRO THR SEQRES 43 A 741 ALA ALA THR LEU HIS ALA LEU HIS TYR HIS GLN VAL ASP SEQRES 44 A 741 VAL ALA ALA VAL GLN GLN GLY LEU ALA GLY LYS ARG ARG SEQRES 45 A 741 ALA THR ILE GLU GLN LEU LEU THR ILE PRO LEU ALA LYS SEQRES 46 A 741 GLU LEU ALA TRP ALA PRO ASP GLU ILE ARG GLU GLU VAL SEQRES 47 A 741 ASP ASN ASN CYS GLN SER ILE LEU GLY TYR VAL VAL ARG SEQRES 48 A 741 TRP VAL ASP GLN GLY VAL GLY ALA SER LYS VAL PRO ASP SEQRES 49 A 741 ILE HIS ASP VAL ALA LEU MET GLU ASP ARG ALA THR LEU SEQRES 50 A 741 ARG ILE SER SER GLN LEU LEU ALA ASN TRP LEU ARG HIS SEQRES 51 A 741 GLY VAL ILE THR SER ALA ASP VAL ARG ALA SER LEU GLU SEQRES 52 A 741 ARG MET ALA PRO LEU VAL ASP ARG GLN ASN ALA GLY ASP SEQRES 53 A 741 VAL ALA TYR ARG PRO MET ALA PRO ASN PHE ASP ASP SER SEQRES 54 A 741 ILE ALA PHE LEU ALA ALA GLN GLU LEU ILE LEU SER GLY SEQRES 55 A 741 ALA GLN GLN PRO ASN GLY TYR THR GLU PRO ILE LEU HIS SEQRES 56 A 741 ARG ARG ARG ARG GLU PHE LYS ALA ARG ALA ALA GLU LYS SEQRES 57 A 741 PRO ALA PRO SER ASP ARG ALA GLY ASP ASP ALA ALA ARG MODRES 5DRC CSO A 410 CYS MODIFIED RESIDUE HET CSO A 410 7 HET MG A 801 1 HET MG A 802 1 HET MG A 803 1 HET MG A 804 1 HET 5ER A 805 17 HET 5ER A 806 17 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MG MAGNESIUM ION HETNAM 5ER (2Z)-2-HYDROXY-4-(1H-INDOL-3-YL)-4-OXOBUT-2-ENOIC ACID FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 MG 4(MG 2+) FORMUL 6 5ER 2(C12 H9 N O4) FORMUL 8 HOH *505(H2 O) HELIX 1 AA1 ARG A 14 GLU A 23 1 10 HELIX 2 AA2 ASP A 31 ARG A 70 1 40 HELIX 3 AA3 ASP A 77 ILE A 88 1 12 HELIX 4 AA4 ASP A 106 THR A 111 1 6 HELIX 5 AA5 ASN A 123 ASN A 132 1 10 HELIX 6 AA6 LEU A 138 GLY A 144 1 7 HELIX 7 AA7 ASN A 161 VAL A 180 1 20 HELIX 8 AA8 SER A 186 ALA A 190 5 5 HELIX 9 AA9 ASN A 213 GLY A 215 5 3 HELIX 10 AB1 ASP A 280 GLY A 297 1 18 HELIX 11 AB2 GLU A 360 ILE A 373 1 14 HELIX 12 AB3 HIS A 374 LYS A 377 5 4 HELIX 13 AB4 GLY A 402 LEU A 420 1 19 HELIX 14 AB5 GLU A 435 VAL A 440 1 6 HELIX 15 AB6 ASN A 441 ALA A 449 1 9 HELIX 16 AB7 GLY A 459 SER A 471 1 13 HELIX 17 AB8 MET A 472 GLY A 475 5 4 HELIX 18 AB9 ARG A 479 LYS A 484 1 6 HELIX 19 AC1 GLN A 486 ALA A 503 1 18 HELIX 20 AC2 LEU A 521 LYS A 529 1 9 HELIX 21 AC3 ILE A 530 ALA A 535 1 6 HELIX 22 AC4 SER A 544 VAL A 558 1 15 HELIX 23 AC5 ASP A 559 ALA A 568 1 10 HELIX 24 AC6 THR A 574 LEU A 579 1 6 HELIX 25 AC7 ALA A 590 GLY A 616 1 27 HELIX 26 AC8 ASP A 633 HIS A 650 1 18 HELIX 27 AC9 THR A 654 ASN A 673 1 20 HELIX 28 AD1 ASN A 685 ASP A 688 5 4 HELIX 29 AD2 SER A 689 SER A 701 1 13 HELIX 30 AD3 GLY A 702 TYR A 709 5 8 HELIX 31 AD4 THR A 710 ALA A 725 1 16 SHEET 1 AA1 4 ARG A 4 VAL A 7 0 SHEET 2 AA1 4 LEU A 10 ALA A 13 -1 O ILE A 12 N VAL A 5 SHEET 3 AA1 4 THR A 346 ASP A 352 -1 O VAL A 351 N ARG A 11 SHEET 4 AA1 4 GLU A 357 PHE A 359 -1 O VAL A 358 N ASN A 347 SHEET 1 AA2 9 GLN A 116 PRO A 120 0 SHEET 2 AA2 9 THR A 267 ASP A 271 1 O ILE A 269 N LEU A 117 SHEET 3 AA2 9 LEU A 335 ARG A 339 1 O PHE A 337 N THR A 268 SHEET 4 AA2 9 ILE A 393 LYS A 397 1 O VAL A 396 N VAL A 338 SHEET 5 AA2 9 MET A 427 ASP A 433 1 O LYS A 428 N ILE A 393 SHEET 6 AA2 9 VAL A 453 THR A 458 1 O ASN A 457 N ASP A 433 SHEET 7 AA2 9 GLN A 510 LYS A 513 1 O GLY A 512 N ILE A 456 SHEET 8 AA2 9 THR A 539 VAL A 542 1 O THR A 539 N LYS A 513 SHEET 9 AA2 9 GLN A 116 PRO A 120 1 N GLN A 116 O ALA A 540 SHEET 1 AA3 5 TRP A 135 SER A 137 0 SHEET 2 AA3 5 VAL A 257 GLU A 263 -1 O LEU A 262 N GLY A 136 SHEET 3 AA3 5 LEU A 237 ILE A 243 -1 N GLU A 240 O ILE A 261 SHEET 4 AA3 5 SER A 226 ASN A 234 -1 N LEU A 232 O ILE A 239 SHEET 5 AA3 5 PHE A 217 ALA A 223 -1 N GLY A 219 O LEU A 231 SHEET 1 AA4 3 GLY A 192 GLN A 196 0 SHEET 2 AA4 3 GLN A 199 ALA A 203 -1 O GLN A 199 N GLN A 196 SHEET 3 AA4 3 SER A 208 THR A 209 -1 O THR A 209 N VAL A 202 SHEET 1 AA5 2 ARG A 318 THR A 321 0 SHEET 2 AA5 2 GLN A 327 LEU A 330 -1 O LEU A 330 N ARG A 318 SHEET 1 AA6 2 SER A 620 PRO A 623 0 SHEET 2 AA6 2 ALA A 629 GLU A 632 -1 O LEU A 630 N VAL A 622 LINK C THR A 409 N CSO A 410 1555 1555 1.33 LINK C CSO A 410 N GLU A 411 1555 1555 1.33 LINK OE1 GLU A 87 MG MG A 803 1555 1555 2.02 LINK OE2 GLU A 434 MG MG A 801 1555 1555 2.10 LINK OD2 ASP A 462 MG MG A 801 1555 1555 2.03 LINK MG MG A 801 O03 5ER A 805 1555 1555 2.22 LINK MG MG A 801 O05 5ER A 805 1555 1555 2.14 LINK MG MG A 801 O HOH A 978 1555 1555 2.21 LINK MG MG A 801 O HOH A1022 1555 1555 2.19 LINK MG MG A 802 O HOH A1149 1555 1555 2.75 LINK MG MG A 802 O HOH A1151 1555 1555 2.14 LINK MG MG A 802 O HOH A1155 1555 1555 2.32 LINK MG MG A 802 O HOH A1259 1555 1555 2.52 LINK MG MG A 802 O HOH A1319 1555 8765 1.93 LINK MG MG A 803 O01 5ER A 806 1555 1555 2.10 LINK MG MG A 803 O05 5ER A 806 1555 1555 2.25 LINK MG MG A 803 O HOH A 934 1555 1555 1.89 CISPEP 1 ALA A 683 PRO A 684 0 -0.10 SITE 1 AC1 5 GLU A 434 ASP A 462 5ER A 805 HOH A 978 SITE 2 AC1 5 HOH A1022 SITE 1 AC2 5 HOH A1149 HOH A1151 HOH A1155 HOH A1259 SITE 2 AC2 5 HOH A1319 SITE 1 AC3 3 GLU A 87 5ER A 806 HOH A 934 SITE 1 AC4 4 VAL A 478 ARG A 479 THR A 482 TRP A 589 SITE 1 AC5 14 SER A 275 ARG A 339 GLU A 434 GLY A 459 SITE 2 AC5 14 PHE A 460 LEU A 461 ASP A 462 MET A 515 SITE 3 AC5 14 TRP A 541 MET A 631 ASP A 633 MG A 801 SITE 4 AC5 14 HOH A 978 HOH A1093 SITE 1 AC6 19 ASN A 55 ASP A 58 GLU A 59 GLU A 87 SITE 2 AC6 19 VAL A 195 GLN A 196 ASP A 197 GLY A 198 SITE 3 AC6 19 TYR A 220 GLU A 225 THR A 321 GLY A 325 SITE 4 AC6 19 MG A 803 HOH A 901 HOH A 934 HOH A 976 SITE 5 AC6 19 HOH A1109 HOH A1182 HOH A1318 CRYST1 78.957 78.957 224.974 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004445 0.00000