HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-SEP-15 5DS3
TITLE CRYSTAL STRUCTURE OF CONSTITUTIVELY ACTIVE PARP-1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 788-1012);
COMPND 5 SYNONYM: PARP-1,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 1,ARTD1,
COMPND 6 NAD(+) ADP-RIBOSYLTRANSFERASE 1,ADPRT 1,POLY[ADP-RIBOSE] SYNTHASE 1;
COMPND 7 EC: 2.4.2.30;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PARP1, ADPRT, PPOL;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28
KEYWDS ADP-RIBOSYL TRANSFERASE, PARP-1, TRANSFERASE-TRANSFERASE INHIBITOR
KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.F.LANGELIER,J.M.PASCAL
REVDAT 5 16-OCT-24 5DS3 1 REMARK
REVDAT 4 27-SEP-23 5DS3 1 REMARK
REVDAT 3 25-DEC-19 5DS3 1 REMARK
REVDAT 2 06-SEP-17 5DS3 1 JRNL REMARK
REVDAT 1 27-JUL-16 5DS3 0
JRNL AUTH J.M.DAWICKI-MCKENNA,M.F.LANGELIER,J.E.DENIZIO,A.A.RICCIO,
JRNL AUTH 2 C.D.CAO,K.R.KARCH,M.MCCAULEY,J.D.STEFFEN,B.E.BLACK,
JRNL AUTH 3 J.M.PASCAL
JRNL TITL PARP-1 ACTIVATION REQUIRES LOCAL UNFOLDING OF AN
JRNL TITL 2 AUTOINHIBITORY DOMAIN.
JRNL REF MOL.CELL V. 60 755 2015
JRNL REFN ISSN 1097-2765
JRNL PMID 26626480
JRNL DOI 10.1016/J.MOLCEL.2015.10.013
REMARK 2
REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.7.0032
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.58
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 10627
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.202
REMARK 3 R VALUE (WORKING SET) : 0.200
REMARK 3 FREE R VALUE : 0.251
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 535
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66
REMARK 3 REFLECTION IN BIN (WORKING SET) : 724
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.34
REMARK 3 BIN R VALUE (WORKING SET) : 0.3920
REMARK 3 BIN FREE R VALUE SET COUNT : 45
REMARK 3 BIN FREE R VALUE : 0.3770
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1887
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 58
REMARK 3 SOLVENT ATOMS : 27
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.49
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.26000
REMARK 3 B22 (A**2) : -1.26000
REMARK 3 B33 (A**2) : 4.08000
REMARK 3 B12 (A**2) : -1.26000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.456
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.127
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2006 ; 0.007 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 1932 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2707 ; 1.228 ; 1.970
REMARK 3 BOND ANGLES OTHERS (DEGREES): 4468 ; 0.706 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 6.720 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;36.768 ;24.458
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;15.700 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.071 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.071 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2340 ; 0.005 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 438 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 977 ; 1.150 ; 3.239
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 976 ; 1.150 ; 3.239
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1220 ; 2.057 ; 4.856
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1221 ; 2.056 ; 4.857
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1029 ; 1.006 ; 3.361
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1022 ; 0.996 ; 3.317
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1472 ; 1.762 ; 4.931
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2138 ; 4.766 ;25.358
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2137 ; 4.753 ;25.344
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 3
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 765 A 1010
REMARK 3 RESIDUE RANGE : A 1101 A 1104
REMARK 3 RESIDUE RANGE : A 1201 A 1227
REMARK 3 ORIGIN FOR THE GROUP (A): 5.3590 37.2563 10.2977
REMARK 3 T TENSOR
REMARK 3 T11: 0.1404 T22: 0.1345
REMARK 3 T33: 0.0335 T12: 0.0768
REMARK 3 T13: 0.0567 T23: 0.0046
REMARK 3 L TENSOR
REMARK 3 L11: 5.3666 L22: 4.8228
REMARK 3 L33: 1.8744 L12: 0.7058
REMARK 3 L13: -1.0878 L23: -0.1958
REMARK 3 S TENSOR
REMARK 3 S11: -0.0781 S12: 0.1118 S13: -0.0648
REMARK 3 S21: -0.2827 S22: 0.0323 S23: -0.1146
REMARK 3 S31: -0.0404 S32: -0.0426 S33: 0.0458
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.00
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5DS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-15.
REMARK 100 THE DEPOSITION ID IS D_1000213715.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 29-AUG-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 12.3.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.12
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11207
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600
REMARK 200 RESOLUTION RANGE LOW (A) : 20.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 13.80
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4
REMARK 200 DATA REDUNDANCY IN SHELL : 13.90
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: PDB ENTRY 3GJW
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 56.32
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG 3350, 0.2 M AMMONIUM
REMARK 280 SULFATE, 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.73233
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.46467
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.09850
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 111.83083
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.36617
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.73233
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 89.46467
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 111.83083
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.09850
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 22.36617
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 742
REMARK 465 GLY A 743
REMARK 465 SER A 744
REMARK 465 SER A 745
REMARK 465 HIS A 746
REMARK 465 HIS A 747
REMARK 465 HIS A 748
REMARK 465 HIS A 749
REMARK 465 HIS A 750
REMARK 465 HIS A 751
REMARK 465 SER A 752
REMARK 465 SER A 753
REMARK 465 GLY A 754
REMARK 465 LEU A 755
REMARK 465 VAL A 756
REMARK 465 PRO A 757
REMARK 465 ARG A 758
REMARK 465 GLY A 759
REMARK 465 SER A 760
REMARK 465 HIS A 761
REMARK 465 MET A 762
REMARK 465 THR A 763
REMARK 465 LYS A 764
REMARK 465 ALA A 823
REMARK 465 THR A 824
REMARK 465 THR A 825
REMARK 465 THR A 1011
REMARK 465 SER A 1012
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 SER A 781 CB OG
REMARK 470 SER A 783 CB OG
REMARK 470 SER A 785 CB OG
REMARK 470 LYS A 852 CG CD CE NZ
REMARK 470 GLN A 853 CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 781 -150.31 -76.45
REMARK 500 SER A 783 -91.22 102.08
REMARK 500 ASP A 788 98.96 70.58
REMARK 500 ASN A 827 156.79 179.52
REMARK 500 ALA A 828 -73.21 109.17
REMARK 500 HIS A 855 155.89 -39.64
REMARK 500 ASN A 856 60.98 65.33
REMARK 500 ASN A 856 60.98 65.78
REMARK 500 PRO A 915 38.71 -91.02
REMARK 500 ASP A 965 -123.94 51.92
REMARK 500 ASN A 980 -71.41 -79.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 1101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 09L A 1102
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1103
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1104
DBREF 5DS3 A 788 1012 UNP P09874 PARP1_HUMAN 788 1012
SEQADV 5DS3 MET A 742 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 GLY A 743 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 SER A 744 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 SER A 745 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 HIS A 746 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 HIS A 747 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 HIS A 748 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 HIS A 749 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 HIS A 750 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 HIS A 751 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 SER A 752 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 SER A 753 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 GLY A 754 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 LEU A 755 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 VAL A 756 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 PRO A 757 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 ARG A 758 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 GLY A 759 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 SER A 760 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 HIS A 761 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 MET A 762 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 THR A 763 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 LYS A 764 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 SER A 765 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 LYS A 766 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 LEU A 767 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 PRO A 768 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 LYS A 769 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 PRO A 770 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 VAL A 771 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 GLN A 772 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 ASP A 773 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 LEU A 774 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 ILE A 775 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 LYS A 776 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 MET A 777 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 ILE A 778 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 PHE A 779 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 GLY A 780 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 SER A 781 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 GLY A 782 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 SER A 783 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 GLY A 784 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 SER A 785 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 GLY A 786 UNP P09874 EXPRESSION TAG
SEQADV 5DS3 GLY A 787 UNP P09874 EXPRESSION TAG
SEQRES 1 A 271 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 271 LEU VAL PRO ARG GLY SER HIS MET THR LYS SER LYS LEU
SEQRES 3 A 271 PRO LYS PRO VAL GLN ASP LEU ILE LYS MET ILE PHE GLY
SEQRES 4 A 271 SER GLY SER GLY SER GLY GLY ASP PRO ILE ASP VAL ASN
SEQRES 5 A 271 TYR GLU LYS LEU LYS THR ASP ILE LYS VAL VAL ASP ARG
SEQRES 6 A 271 ASP SER GLU GLU ALA GLU ILE ILE ARG LYS TYR VAL LYS
SEQRES 7 A 271 ASN THR HIS ALA THR THR HIS ASN ALA TYR ASP LEU GLU
SEQRES 8 A 271 VAL ILE ASP ILE PHE LYS ILE GLU ARG GLU GLY GLU CYS
SEQRES 9 A 271 GLN ARG TYR LYS PRO PHE LYS GLN LEU HIS ASN ARG ARG
SEQRES 10 A 271 LEU LEU TRP HIS GLY SER ARG THR THR ASN PHE ALA GLY
SEQRES 11 A 271 ILE LEU SER GLN GLY LEU ARG ILE ALA PRO PRO GLU ALA
SEQRES 12 A 271 PRO VAL THR GLY TYR MET PHE GLY LYS GLY ILE TYR PHE
SEQRES 13 A 271 ALA ASP MET VAL SER LYS SER ALA ASN TYR CYS HIS THR
SEQRES 14 A 271 SER GLN GLY ASP PRO ILE GLY LEU ILE LEU LEU GLY GLU
SEQRES 15 A 271 VAL ALA LEU GLY ASN MET TYR GLU LEU LYS HIS ALA SER
SEQRES 16 A 271 HIS ILE SER LYS LEU PRO LYS GLY LYS HIS SER VAL LYS
SEQRES 17 A 271 GLY LEU GLY LYS THR THR PRO ASP PRO SER ALA ASN ILE
SEQRES 18 A 271 SER LEU ASP GLY VAL ASP VAL PRO LEU GLY THR GLY ILE
SEQRES 19 A 271 SER SER GLY VAL ASN ASP THR SER LEU LEU TYR ASN GLU
SEQRES 20 A 271 TYR ILE VAL TYR ASP ILE ALA GLN VAL ASN LEU LYS TYR
SEQRES 21 A 271 LEU LEU LYS LEU LYS PHE ASN PHE LYS THR SER
HET 1PE A1101 16
HET 09L A1102 32
HET SO4 A1103 5
HET SO4 A1104 5
HETNAM 1PE PENTAETHYLENE GLYCOL
HETNAM 09L 4-(3-{[4-(CYCLOPROPYLCARBONYL)PIPERAZIN-1-YL]CARBONYL}-
HETNAM 2 09L 4-FLUOROBENZYL)PHTHALAZIN-1(2H)-ONE
HETNAM SO4 SULFATE ION
HETSYN 1PE PEG400
HETSYN 09L OLAPARIB
FORMUL 2 1PE C10 H22 O6
FORMUL 3 09L C24 H23 F N4 O3
FORMUL 4 SO4 2(O4 S 2-)
FORMUL 6 HOH *27(H2 O)
HELIX 1 AA1 PRO A 768 GLY A 780 1 13
HELIX 2 AA2 PRO A 789 LYS A 796 1 8
HELIX 3 AA3 SER A 808 THR A 821 1 14
HELIX 4 AA4 GLY A 843 LYS A 849 1 7
HELIX 5 AA5 PRO A 850 LYS A 852 5 3
HELIX 6 AA6 ARG A 865 THR A 867 5 3
HELIX 7 AA7 ASN A 868 GLY A 876 1 9
HELIX 8 AA8 MET A 900 ASN A 906 1 7
HELIX 9 AA9 TYR A 907 HIS A 909 5 3
HELIX 10 AB1 PRO A 958 ASN A 961 5 4
HELIX 11 AB2 ASP A 993 ALA A 995 5 3
SHEET 1 AA1 5 THR A 799 VAL A 803 0
SHEET 2 AA1 5 ASP A 830 ARG A 841 -1 O LYS A 838 N LYS A 802
SHEET 3 AA1 5 VAL A 997 ASN A1008 -1 O LYS A1006 N GLU A 832
SHEET 4 AA1 5 ILE A 916 ALA A 925 -1 N ILE A 919 O LEU A1003
SHEET 5 AA1 5 ARG A 857 GLY A 863 -1 N ARG A 858 O VAL A 924
SHEET 1 AA2 4 ILE A 895 PHE A 897 0
SHEET 2 AA2 4 GLU A 988 VAL A 991 -1 O TYR A 989 N PHE A 897
SHEET 3 AA2 4 SER A 947 GLY A 950 -1 N GLY A 950 O GLU A 988
SHEET 4 AA2 4 MET A 929 LEU A 932 1 N LEU A 932 O LYS A 949
SHEET 1 AA3 3 GLY A 974 SER A 976 0
SHEET 2 AA3 3 GLY A 952 PRO A 956 -1 N THR A 955 O ILE A 975
SHEET 3 AA3 3 LEU A 984 TYR A 986 1 O LEU A 985 N THR A 954
SHEET 1 AA4 2 ILE A 962 LEU A 964 0
SHEET 2 AA4 2 VAL A 967 VAL A 969 -1 O VAL A 967 N LEU A 964
SSBOND 1 CYS A 845 CYS A 845 1555 7555 2.06
SITE 1 AC1 4 ARG A 865 ASN A 906 TYR A 907 HIS A 909
SITE 1 AC2 12 HIS A 862 GLY A 863 LEU A 877 ARG A 878
SITE 2 AC2 12 TYR A 889 GLY A 894 ILE A 895 TYR A 896
SITE 3 AC2 12 PHE A 897 SER A 904 TYR A 907 GLU A 988
SITE 1 AC3 4 LYS A 903 LEU A 984 LEU A 985 TYR A 986
SITE 1 AC4 3 ARG A 858 MET A 929 LYS A 949
CRYST1 93.405 93.405 134.197 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010706 0.006181 0.000000 0.00000
SCALE2 0.000000 0.012362 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007452 0.00000