HEADER VIRAL PROTEIN 17-SEP-15 5DSD TITLE THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF EBOLA (BUNDIBUGYO) TITLE 2 NUCLEOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 641-739); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BUNDIBUGYO VIRUS; SOURCE 3 ORGANISM_TAXID: 565995; SOURCE 4 GENE: NP, DH33_45404GPNP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PARALLEL1-MBPHIS KEYWDS VIRAL PROTEIN, FILOVIRIDAE EXPDTA X-RAY DIFFRACTION AUTHOR L.BAKER,K.B.HANDING,D.UTEPBERGENOV,U.DEREWENDA,Z.S.DEREWENDA REVDAT 5 27-SEP-23 5DSD 1 REMARK REVDAT 4 01-JAN-20 5DSD 1 REMARK REVDAT 3 17-JAN-18 5DSD 1 REMARK REVDAT 2 02-MAR-16 5DSD 1 JRNL REVDAT 1 30-SEP-15 5DSD 0 SPRSDE 30-SEP-15 5DSD 5CIJ JRNL AUTH L.E.BAKER,J.F.ELLENA,K.B.HANDING,U.DEREWENDA,D.UTEPBERGENOV, JRNL AUTH 2 D.A.ENGEL,Z.S.DEREWENDA JRNL TITL MOLECULAR ARCHITECTURE OF THE NUCLEOPROTEIN C-TERMINAL JRNL TITL 2 DOMAIN FROM THE EBOLA AND MARBURG VIRUSES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 49 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 26894534 JRNL DOI 10.1107/S2059798315021439 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.DZIUBANSKA,U.DEREWENDA,J.F.ELLENA,D.A.ENGEL, REMARK 1 AUTH 2 Z.S.DEREWENDA REMARK 1 TITL THE STRUCTURE OF THE C-TERMINAL DOMAIN OF THE ZAIRE REMARK 1 TITL 2 EBOLAVIRUS NUCLEOPROTEIN. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 70 2420 2014 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 25195755 REMARK 1 DOI 10.1107/S1399004714014710 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 11792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 604 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 861 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -2.20000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.710 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 908 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 806 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1225 ; 1.253 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1866 ; 0.899 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 104 ; 5.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;40.102 ;24.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 153 ;13.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;10.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 119 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1027 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 222 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 413 ;13.696 ; 3.935 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 412 ;13.629 ; 3.925 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 515 ;14.363 ; 5.917 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 637 A 645 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6520 66.0300 27.4230 REMARK 3 T TENSOR REMARK 3 T11: 0.8102 T22: 0.6334 REMARK 3 T33: 0.0736 T12: -0.1367 REMARK 3 T13: 0.0481 T23: -0.0990 REMARK 3 L TENSOR REMARK 3 L11: 6.9694 L22: 10.9071 REMARK 3 L33: 22.4559 L12: -4.8245 REMARK 3 L13: -5.6534 L23: 6.1529 REMARK 3 S TENSOR REMARK 3 S11: -0.2281 S12: -0.0362 S13: -0.5299 REMARK 3 S21: 0.8334 S22: -0.3809 S23: 0.7254 REMARK 3 S31: 1.9299 S32: -1.4008 S33: 0.6090 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 646 A 661 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8680 57.1170 13.5580 REMARK 3 T TENSOR REMARK 3 T11: 0.4049 T22: 0.4396 REMARK 3 T33: 0.0621 T12: 0.0005 REMARK 3 T13: -0.0096 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 5.2256 L22: 13.2604 REMARK 3 L33: 6.0221 L12: 0.8350 REMARK 3 L13: -0.3475 L23: 5.3052 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: 0.2498 S13: -0.3232 REMARK 3 S21: -0.0731 S22: -0.2151 S23: 0.6502 REMARK 3 S31: 0.0341 S32: -0.6076 S33: 0.2877 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 662 A 671 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4450 55.9580 17.4600 REMARK 3 T TENSOR REMARK 3 T11: 0.5052 T22: 0.4583 REMARK 3 T33: 0.1231 T12: -0.0008 REMARK 3 T13: -0.0070 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 3.4309 L22: 8.3868 REMARK 3 L33: 6.5105 L12: 0.3435 REMARK 3 L13: 2.0397 L23: 0.2650 REMARK 3 S TENSOR REMARK 3 S11: -0.1390 S12: 0.0581 S13: -0.5016 REMARK 3 S21: 0.0040 S22: -0.0394 S23: 0.1470 REMARK 3 S31: -0.2002 S32: 0.0832 S33: 0.1784 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 672 A 698 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8880 46.0570 24.5100 REMARK 3 T TENSOR REMARK 3 T11: 0.4192 T22: 0.4413 REMARK 3 T33: 0.0845 T12: 0.0425 REMARK 3 T13: 0.1337 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 4.0368 L22: 9.6449 REMARK 3 L33: 4.7331 L12: -2.6128 REMARK 3 L13: -1.7662 L23: 2.1589 REMARK 3 S TENSOR REMARK 3 S11: -0.6915 S12: -0.2001 S13: -0.4183 REMARK 3 S21: 0.6160 S22: 0.1832 S23: 0.3146 REMARK 3 S31: 0.2982 S32: -0.1934 S33: 0.5083 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 699 A 715 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6620 31.1950 22.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.4757 T22: 0.2858 REMARK 3 T33: 0.3764 T12: 0.0380 REMARK 3 T13: 0.3090 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 12.2717 L22: 9.0614 REMARK 3 L33: 15.8036 L12: -3.0546 REMARK 3 L13: -6.4357 L23: -0.4431 REMARK 3 S TENSOR REMARK 3 S11: -0.7594 S12: -0.7271 S13: -1.3264 REMARK 3 S21: 0.7681 S22: 0.3045 S23: 0.2732 REMARK 3 S31: 1.0297 S32: 0.1933 S33: 0.4548 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 716 A 739 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4510 38.7780 14.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.5341 T22: 0.4981 REMARK 3 T33: 0.3339 T12: -0.1077 REMARK 3 T13: 0.2018 T23: -0.1408 REMARK 3 L TENSOR REMARK 3 L11: 5.5817 L22: 6.6894 REMARK 3 L33: 5.6811 L12: -5.3055 REMARK 3 L13: -0.7765 L23: 1.0737 REMARK 3 S TENSOR REMARK 3 S11: -0.1280 S12: 0.6475 S13: -1.0672 REMARK 3 S21: -0.2807 S22: -0.2164 S23: 0.9318 REMARK 3 S31: 0.2186 S32: -0.4450 S33: 0.3445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5DSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12398 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : 0.43200 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4QB0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION SOLUTION: 1.33 M REMARK 280 LISO4, 0.1 M TRIS PH 8.5. 1:1 RATIO (250 NL: 250 NL) OF REMARK 280 PRECIPITANT TO PROTEIN (AT A CONCENTRATION OF 13.9 MG/ML). 60 REMARK 280 MCL RESERVOIR. PROTEIN PURIFICATION BUFFER 50MM TRIS-HCL, 150 MM REMARK 280 NACL; PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.57867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.15733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.57867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.15733 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.57867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.15733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.57867 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 55.15733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -54.47850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 94.35953 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.15733 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 54.47850 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 94.35953 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.57867 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 638 171.85 -59.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QAZ RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF EBOLA (ZAIRE) REMARK 900 NUCLEOPROTEIN REMARK 900 RELATED ID: 4QB0 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF EBOLA (ZAIRE) REMARK 900 NUCLEOPROTEIN DBREF 5DSD A 641 739 UNP B8XCM7 B8XCM7_9MONO 641 739 SEQADV 5DSD GLY A 637 UNP B8XCM7 EXPRESSION TAG SEQADV 5DSD ALA A 638 UNP B8XCM7 EXPRESSION TAG SEQADV 5DSD MET A 639 UNP B8XCM7 EXPRESSION TAG SEQADV 5DSD ALA A 640 UNP B8XCM7 EXPRESSION TAG SEQRES 1 A 103 GLY ALA MET ALA ASN ALA GLN SER GLU GLN SER ILE ALA SEQRES 2 A 103 GLU MET TYR GLN HIS ILE LEU LYS THR GLN GLY PRO PHE SEQRES 3 A 103 ASP ALA ILE LEU TYR TYR HIS MET MET LYS GLU GLU PRO SEQRES 4 A 103 ILE ILE PHE SER THR SER ASP GLY LYS GLU TYR THR TYR SEQRES 5 A 103 PRO ASP SER LEU GLU ASP GLU TYR PRO PRO TRP LEU SER SEQRES 6 A 103 GLU LYS GLU ALA MET ASN GLU ASP ASN ARG PHE ILE THR SEQRES 7 A 103 MET ASP GLY GLN GLN PHE TYR TRP PRO VAL MET ASN HIS SEQRES 8 A 103 ARG ASN LYS PHE MET ALA ILE LEU GLN HIS HIS ARG HET GOL A 801 6 HET GOL A 802 6 HET CL A 803 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 CL CL 1- FORMUL 5 HOH *112(H2 O) HELIX 1 AA1 SER A 644 GLN A 659 1 16 HELIX 2 AA2 GLY A 660 GLU A 673 1 14 HELIX 3 AA3 PRO A 689 GLU A 693 5 5 HELIX 4 AA4 LYS A 703 ASN A 710 5 8 HELIX 5 AA5 PRO A 723 MET A 725 5 3 HELIX 6 AA6 ASN A 726 HIS A 738 1 13 SHEET 1 AA1 2 ILE A 676 SER A 679 0 SHEET 2 AA1 2 GLU A 685 TYR A 688 -1 O TYR A 688 N ILE A 676 SHEET 1 AA2 2 PHE A 712 THR A 714 0 SHEET 2 AA2 2 GLN A 719 TYR A 721 -1 O PHE A 720 N ILE A 713 CISPEP 1 TYR A 688 PRO A 689 0 3.93 SITE 1 AC1 2 LYS A 703 ASN A 707 SITE 1 AC2 5 ASN A 726 ARG A 728 HOH A 927 HOH A 936 SITE 2 AC2 5 HOH A1009 SITE 1 AC3 1 SER A 679 CRYST1 108.957 108.957 82.736 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009178 0.005299 0.000000 0.00000 SCALE2 0.000000 0.010598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012087 0.00000