HEADER SIGNALING PROTEIN, CELL ADHESION 18-SEP-15 5DTH TITLE CRYSTAL STRUCTURE OF MUPP1 PDZ8 DOMAIN FROM RATTUS NORVEGICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIPLE PDZ DOMAIN PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1312-1422; COMPND 5 SYNONYM: MULTI-PDZ DOMAIN PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MPDZ, MUPP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN BINDING, SIGNALING PROTEIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,Y.LV,H.ZHU,W.LIU REVDAT 2 08-NOV-23 5DTH 1 JRNL REMARK REVDAT 1 14-SEP-16 5DTH 0 JRNL AUTH Y.LV,J.LI,H.ZHU,W.LIU JRNL TITL CRYSTAL STRUCTURE AND BIOCHEMICAL CHARACTERISTICS OF MUPP1 JRNL TITL 2 PDZ8 DOMAIN FROM RATTUS NORREGICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 30350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.51000 REMARK 3 B22 (A**2) : -3.47000 REMARK 3 B33 (A**2) : -7.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.097 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3259 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3097 ; 0.013 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4409 ; 2.041 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7069 ; 2.213 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.697 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;35.865 ;24.196 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;14.607 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.071 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3815 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 762 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1718 ; 2.476 ; 2.380 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1717 ; 2.476 ; 2.380 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2140 ; 3.424 ; 3.555 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1314 1421 B 1314 1421 11084 0.140 0.050 REMARK 3 2 A 1314 1418 C 1314 1418 9776 0.180 0.050 REMARK 3 3 A 1314 1419 D 1314 1419 9934 0.160 0.050 REMARK 3 4 B 1313 1418 C 1313 1418 9754 0.200 0.050 REMARK 3 5 B 1314 1418 D 1314 1418 10254 0.160 0.050 REMARK 3 6 C 1314 1418 D 1314 1418 9706 0.180 0.050 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.896 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5DTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31967 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.66300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NAI, 25% W/V PEG3350, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.05200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.62100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.05200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.62100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1312 REMARK 465 LYS A 1313 REMARK 465 GLY A 1343 REMARK 465 HIS A 1344 REMARK 465 SER A 1345 REMARK 465 GLY B 1343 REMARK 465 HIS B 1344 REMARK 465 ASP C 1312 REMARK 465 ALA C 1420 REMARK 465 ASP C 1421 REMARK 465 ALA C 1422 REMARK 465 ASP D 1312 REMARK 465 LYS D 1313 REMARK 465 ALA D 1420 REMARK 465 ASP D 1421 REMARK 465 ALA D 1422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1314 CG CD OE1 OE2 REMARK 470 GLU A1316 CG CD OE1 OE2 REMARK 470 LYS A1322 CG CD CE NZ REMARK 470 LYS A1355 CG CD CE NZ REMARK 470 ARG A1375 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1391 CG CD OE1 NE2 REMARK 470 LYS A1406 CG CD CE NZ REMARK 470 LYS A1411 CG CD CE NZ REMARK 470 ASP B1312 CG OD1 OD2 REMARK 470 LYS B1313 CG CD CE NZ REMARK 470 GLU B1316 CG CD OE1 OE2 REMARK 470 LYS B1322 CG CD CE NZ REMARK 470 GLU B1341 CG CD OE1 OE2 REMARK 470 LYS B1406 CE NZ REMARK 470 LYS B1411 CG CD CE NZ REMARK 470 LYS C1313 CG CD CE NZ REMARK 470 LYS C1322 CG CD CE NZ REMARK 470 HIS C1344 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C1355 CG CD CE NZ REMARK 470 ARG C1357 CG CD NE CZ NH1 NH2 REMARK 470 ARG C1375 CG CD NE CZ NH1 NH2 REMARK 470 LYS C1406 CG CD CE NZ REMARK 470 LYS C1413 CE NZ REMARK 470 ASN C1419 CG OD1 ND2 REMARK 470 GLU D1314 CG CD OE1 OE2 REMARK 470 ASP D1315 CG OD1 OD2 REMARK 470 GLU D1316 CG CD OE1 OE2 REMARK 470 LYS D1322 CG CD CE NZ REMARK 470 GLU D1341 CG CD OE1 OE2 REMARK 470 LYS D1355 CG CD CE NZ REMARK 470 ASP D1356 CG OD1 OD2 REMARK 470 ARG D1357 CG CD NE CZ NH1 NH2 REMARK 470 ARG D1375 NE CZ NH1 NH2 REMARK 470 LYS D1411 CG CD CE NZ REMARK 470 LYS D1413 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR C 1358 O HOH C 1501 2.08 REMARK 500 N SER C 1320 OD1 ASN C 1323 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A1326 CD GLU A1326 OE1 0.075 REMARK 500 GLU D1339 CG GLU D1339 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1357 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A1396 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A1396 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ILE B1381 CA - CB - CG1 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG C1396 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 LYS D1342 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG D1396 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG D1396 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 CYS D1407 CB - CA - C ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1382 -4.74 78.49 REMARK 500 PRO A1409 -178.18 -62.34 REMARK 500 ALA B1382 -5.23 83.98 REMARK 500 ASN B1419 41.42 -88.55 REMARK 500 ARG C1357 -131.09 -107.65 REMARK 500 ALA C1382 -1.85 76.63 REMARK 500 SER C1410 -51.00 -154.70 REMARK 500 ASP D1356 -127.60 -105.40 REMARK 500 ALA D1382 -5.64 79.91 REMARK 500 PRO D1409 -178.42 -65.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1553 DISTANCE = 6.17 ANGSTROMS DBREF 5DTH A 1312 1422 UNP O55164 MPDZ_RAT 1312 1422 DBREF 5DTH B 1312 1422 UNP O55164 MPDZ_RAT 1312 1422 DBREF 5DTH C 1312 1422 UNP O55164 MPDZ_RAT 1312 1422 DBREF 5DTH D 1312 1422 UNP O55164 MPDZ_RAT 1312 1422 SEQRES 1 A 111 ASP LYS GLU ASP GLU PHE GLY TYR SER TRP LYS ASN ILE SEQRES 2 A 111 GLN GLU ARG TYR GLY THR LEU THR GLY GLN LEU HIS MET SEQRES 3 A 111 ILE GLU LEU GLU LYS GLY HIS SER GLY LEU GLY LEU SER SEQRES 4 A 111 LEU ALA GLY ASN LYS ASP ARG THR ARG MET SER VAL PHE SEQRES 5 A 111 ILE VAL GLY ILE ASP PRO THR GLY ALA ALA GLY ARG ASP SEQRES 6 A 111 GLY ARG LEU GLN ILE ALA ASP GLU LEU LEU GLU ILE ASN SEQRES 7 A 111 GLY GLN ILE LEU TYR GLY ARG SER HIS GLN ASN ALA SER SEQRES 8 A 111 SER ILE ILE LYS CYS ALA PRO SER LYS VAL LYS ILE ILE SEQRES 9 A 111 PHE ILE ARG ASN ALA ASP ALA SEQRES 1 B 111 ASP LYS GLU ASP GLU PHE GLY TYR SER TRP LYS ASN ILE SEQRES 2 B 111 GLN GLU ARG TYR GLY THR LEU THR GLY GLN LEU HIS MET SEQRES 3 B 111 ILE GLU LEU GLU LYS GLY HIS SER GLY LEU GLY LEU SER SEQRES 4 B 111 LEU ALA GLY ASN LYS ASP ARG THR ARG MET SER VAL PHE SEQRES 5 B 111 ILE VAL GLY ILE ASP PRO THR GLY ALA ALA GLY ARG ASP SEQRES 6 B 111 GLY ARG LEU GLN ILE ALA ASP GLU LEU LEU GLU ILE ASN SEQRES 7 B 111 GLY GLN ILE LEU TYR GLY ARG SER HIS GLN ASN ALA SER SEQRES 8 B 111 SER ILE ILE LYS CYS ALA PRO SER LYS VAL LYS ILE ILE SEQRES 9 B 111 PHE ILE ARG ASN ALA ASP ALA SEQRES 1 C 111 ASP LYS GLU ASP GLU PHE GLY TYR SER TRP LYS ASN ILE SEQRES 2 C 111 GLN GLU ARG TYR GLY THR LEU THR GLY GLN LEU HIS MET SEQRES 3 C 111 ILE GLU LEU GLU LYS GLY HIS SER GLY LEU GLY LEU SER SEQRES 4 C 111 LEU ALA GLY ASN LYS ASP ARG THR ARG MET SER VAL PHE SEQRES 5 C 111 ILE VAL GLY ILE ASP PRO THR GLY ALA ALA GLY ARG ASP SEQRES 6 C 111 GLY ARG LEU GLN ILE ALA ASP GLU LEU LEU GLU ILE ASN SEQRES 7 C 111 GLY GLN ILE LEU TYR GLY ARG SER HIS GLN ASN ALA SER SEQRES 8 C 111 SER ILE ILE LYS CYS ALA PRO SER LYS VAL LYS ILE ILE SEQRES 9 C 111 PHE ILE ARG ASN ALA ASP ALA SEQRES 1 D 111 ASP LYS GLU ASP GLU PHE GLY TYR SER TRP LYS ASN ILE SEQRES 2 D 111 GLN GLU ARG TYR GLY THR LEU THR GLY GLN LEU HIS MET SEQRES 3 D 111 ILE GLU LEU GLU LYS GLY HIS SER GLY LEU GLY LEU SER SEQRES 4 D 111 LEU ALA GLY ASN LYS ASP ARG THR ARG MET SER VAL PHE SEQRES 5 D 111 ILE VAL GLY ILE ASP PRO THR GLY ALA ALA GLY ARG ASP SEQRES 6 D 111 GLY ARG LEU GLN ILE ALA ASP GLU LEU LEU GLU ILE ASN SEQRES 7 D 111 GLY GLN ILE LEU TYR GLY ARG SER HIS GLN ASN ALA SER SEQRES 8 D 111 SER ILE ILE LYS CYS ALA PRO SER LYS VAL LYS ILE ILE SEQRES 9 D 111 PHE ILE ARG ASN ALA ASP ALA FORMUL 5 HOH *210(H2 O) HELIX 1 AA1 SER A 1320 GLY A 1329 1 10 HELIX 2 AA2 GLY A 1371 GLY A 1377 1 7 HELIX 3 AA3 SER A 1397 ALA A 1408 1 12 HELIX 4 AA4 SER B 1320 GLY B 1329 1 10 HELIX 5 AA5 GLY B 1371 GLY B 1377 1 7 HELIX 6 AA6 SER B 1397 ALA B 1408 1 12 HELIX 7 AA7 SER C 1320 GLY C 1329 1 10 HELIX 8 AA8 GLY C 1371 GLY C 1377 1 7 HELIX 9 AA9 SER C 1397 ALA C 1408 1 12 HELIX 10 AB1 GLU D 1314 GLY D 1318 5 5 HELIX 11 AB2 SER D 1320 GLY D 1329 1 10 HELIX 12 AB3 GLY D 1371 GLY D 1377 1 7 HELIX 13 AB4 SER D 1397 ALA D 1408 1 12 SHEET 1 AA1 4 GLN A1334 GLU A1341 0 SHEET 2 AA1 4 LYS A1411 ARG A1418 -1 O VAL A1412 N LEU A1340 SHEET 3 AA1 4 GLU A1384 ILE A1388 -1 N LEU A1386 O ILE A1415 SHEET 4 AA1 4 GLN A1391 ILE A1392 -1 O GLN A1391 N ILE A1388 SHEET 1 AA2 2 LEU A1349 GLY A1353 0 SHEET 2 AA2 2 VAL A1362 ILE A1367 -1 O PHE A1363 N ALA A1352 SHEET 1 AA3 4 GLN B1334 GLU B1341 0 SHEET 2 AA3 4 LYS B1411 ARG B1418 -1 O VAL B1412 N LEU B1340 SHEET 3 AA3 4 GLU B1384 ILE B1388 -1 N GLU B1384 O ILE B1417 SHEET 4 AA3 4 GLN B1391 ILE B1392 -1 O GLN B1391 N ILE B1388 SHEET 1 AA4 2 LEU B1349 GLY B1353 0 SHEET 2 AA4 2 VAL B1362 ILE B1367 -1 O PHE B1363 N ALA B1352 SHEET 1 AA5 4 GLN C1334 GLU C1341 0 SHEET 2 AA5 4 LYS C1411 ARG C1418 -1 O ARG C1418 N GLN C1334 SHEET 3 AA5 4 GLU C1384 ILE C1388 -1 N GLU C1384 O ILE C1417 SHEET 4 AA5 4 GLN C1391 ILE C1392 -1 O GLN C1391 N ILE C1388 SHEET 1 AA6 2 LEU C1349 ASN C1354 0 SHEET 2 AA6 2 SER C1361 ILE C1367 -1 O VAL C1365 N SER C1350 SHEET 1 AA7 4 GLN D1334 GLU D1341 0 SHEET 2 AA7 4 LYS D1411 ARG D1418 -1 O ARG D1418 N GLN D1334 SHEET 3 AA7 4 GLU D1384 ILE D1388 -1 N LEU D1386 O ILE D1415 SHEET 4 AA7 4 GLN D1391 ILE D1392 -1 O GLN D1391 N ILE D1388 SHEET 1 AA8 2 LEU D1349 LYS D1355 0 SHEET 2 AA8 2 MET D1360 ILE D1367 -1 O GLY D1366 N SER D1350 CRYST1 84.104 39.242 134.449 90.00 92.73 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011890 0.000000 0.000568 0.00000 SCALE2 0.000000 0.025483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007446 0.00000