HEADER OXIDOREDUCTASE 21-SEP-15 5DV9 TITLE CRYSTAL STRUCTURE OF THE LUCIFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUCIFERIN 4-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LUCIFERASE; COMPND 5 EC: 1.13.12.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTINUS PYRALIS; SOURCE 3 ORGANISM_COMMON: COMMON EASTERN FIREFLY; SOURCE 4 ORGANISM_TAXID: 7054; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LUCIFERASE, APO, PHOTINUS PYRALIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SU,Z.LI,Z.YUAN,L.GU REVDAT 2 20-MAR-24 5DV9 1 REMARK REVDAT 1 28-SEP-16 5DV9 0 JRNL AUTH J.SU,Z.LI,Z.YUAN,L.GU JRNL TITL CRYSTAL STRUCTURE OF THE LUCIFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10PRE_2124: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.420 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7139 - 5.7807 0.99 1927 155 0.1727 0.2076 REMARK 3 2 5.7807 - 4.5902 1.00 1816 146 0.1651 0.1973 REMARK 3 3 4.5902 - 4.0105 1.00 1808 144 0.1605 0.1897 REMARK 3 4 4.0105 - 3.6441 1.00 1785 143 0.1747 0.2215 REMARK 3 5 3.6441 - 3.3830 1.00 1781 142 0.1979 0.2505 REMARK 3 6 3.3830 - 3.1836 1.00 1767 143 0.2181 0.2890 REMARK 3 7 3.1836 - 3.0242 1.00 1776 142 0.2114 0.2919 REMARK 3 8 3.0242 - 2.8926 1.00 1762 141 0.2169 0.2842 REMARK 3 9 2.8926 - 2.7813 1.00 1754 141 0.2225 0.2633 REMARK 3 10 2.7813 - 2.6853 1.00 1771 142 0.2208 0.2773 REMARK 3 11 2.6853 - 2.6014 1.00 1740 140 0.2205 0.2811 REMARK 3 12 2.6014 - 2.5270 1.00 1744 139 0.2343 0.3622 REMARK 3 13 2.5270 - 2.4605 1.00 1749 141 0.2404 0.3348 REMARK 3 14 2.4605 - 2.4005 1.00 1746 139 0.2260 0.2906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4322 REMARK 3 ANGLE : 0.976 5858 REMARK 3 CHIRALITY : 0.057 661 REMARK 3 PLANARITY : 0.009 755 REMARK 3 DIHEDRAL : 17.262 1594 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 363262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LI2SO4, PEG 8000, TRIS, PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.84050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.98350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.98350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.92025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.98350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.98350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.76075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.98350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.98350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.92025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.98350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.98350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.76075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.84050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 GLN A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 VAL A -7 REMARK 465 LEU A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 544 REMARK 465 GLY A 545 REMARK 465 GLY A 546 REMARK 465 LYS A 547 REMARK 465 SER A 548 REMARK 465 LYS A 549 REMARK 465 LEU A 550 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 5 O HOH A 601 1.52 REMARK 500 OD2 ASP A 107 O HOH A 602 1.90 REMARK 500 O HOH A 685 O HOH A 788 1.92 REMARK 500 O HOH A 718 O HOH A 744 1.98 REMARK 500 O HOH A 771 O HOH A 793 2.00 REMARK 500 NH2 ARG A 32 O HOH A 603 2.01 REMARK 500 N ASP A 475 O HOH A 604 2.06 REMARK 500 O HOH A 752 O HOH A 770 2.07 REMARK 500 ND2 ASN A 229 O HOH A 605 2.08 REMARK 500 NH1 ARG A 387 O HOH A 606 2.11 REMARK 500 O HOH A 718 O HOH A 769 2.12 REMARK 500 OD1 ASP A 356 O HOH A 607 2.13 REMARK 500 O HOH A 722 O HOH A 777 2.14 REMARK 500 O PRO A 174 O HOH A 608 2.14 REMARK 500 OD1 ASP A 107 OG SER A 129 2.18 REMARK 500 OH TYR A 266 O HOH A 609 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 759 O HOH A 773 4454 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 244 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 HIS A 244 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 82 146.12 -170.56 REMARK 500 ASP A 107 -33.98 -34.05 REMARK 500 ASP A 153 51.64 -105.19 REMARK 500 SER A 199 -38.96 82.78 REMARK 500 SER A 201 -148.40 -62.64 REMARK 500 THR A 346 -67.04 71.63 REMARK 500 ASP A 356 46.74 -58.24 REMARK 500 PHE A 368 -2.54 78.19 REMARK 500 PRO A 395 1.36 -69.79 REMARK 500 ASN A 404 69.75 -161.70 REMARK 500 ASP A 427 -168.62 -107.29 REMARK 500 ASP A 474 -51.44 -120.35 REMARK 500 ASP A 475 -64.35 101.53 REMARK 500 ALA A 477 -38.39 -139.35 REMARK 500 SER A 504 8.46 -67.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 4 LYS A 5 145.03 REMARK 500 SER A 199 GLY A 200 -85.28 REMARK 500 ASP A 476 ALA A 477 -131.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A 244 -22.55 REMARK 500 HIS A 244 -23.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 796 DISTANCE = 6.15 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DWV RELATED DB: PDB DBREF 5DV9 A 1 550 UNP P08659 LUCI_PHOPY 1 550 SEQADV 5DV9 MET A -22 UNP P08659 EXPRESSION TAG SEQADV 5DV9 GLY A -21 UNP P08659 EXPRESSION TAG SEQADV 5DV9 SER A -20 UNP P08659 EXPRESSION TAG SEQADV 5DV9 SER A -19 UNP P08659 EXPRESSION TAG SEQADV 5DV9 HIS A -18 UNP P08659 EXPRESSION TAG SEQADV 5DV9 HIS A -17 UNP P08659 EXPRESSION TAG SEQADV 5DV9 HIS A -16 UNP P08659 EXPRESSION TAG SEQADV 5DV9 HIS A -15 UNP P08659 EXPRESSION TAG SEQADV 5DV9 HIS A -14 UNP P08659 EXPRESSION TAG SEQADV 5DV9 HIS A -13 UNP P08659 EXPRESSION TAG SEQADV 5DV9 SER A -12 UNP P08659 EXPRESSION TAG SEQADV 5DV9 GLN A -11 UNP P08659 EXPRESSION TAG SEQADV 5DV9 ASP A -10 UNP P08659 EXPRESSION TAG SEQADV 5DV9 LEU A -9 UNP P08659 EXPRESSION TAG SEQADV 5DV9 GLU A -8 UNP P08659 EXPRESSION TAG SEQADV 5DV9 VAL A -7 UNP P08659 EXPRESSION TAG SEQADV 5DV9 LEU A -6 UNP P08659 EXPRESSION TAG SEQADV 5DV9 PHE A -5 UNP P08659 EXPRESSION TAG SEQADV 5DV9 GLN A -4 UNP P08659 EXPRESSION TAG SEQADV 5DV9 GLY A -3 UNP P08659 EXPRESSION TAG SEQADV 5DV9 PRO A -2 UNP P08659 EXPRESSION TAG SEQADV 5DV9 GLY A -1 UNP P08659 EXPRESSION TAG SEQADV 5DV9 SER A 0 UNP P08659 EXPRESSION TAG SEQRES 1 A 573 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 573 LEU GLU VAL LEU PHE GLN GLY PRO GLY SER MET GLU ASP SEQRES 3 A 573 ALA LYS ASN ILE LYS LYS GLY PRO ALA PRO PHE TYR PRO SEQRES 4 A 573 LEU GLU ASP GLY THR ALA GLY GLU GLN LEU HIS LYS ALA SEQRES 5 A 573 MET LYS ARG TYR ALA LEU VAL PRO GLY THR ILE ALA PHE SEQRES 6 A 573 THR ASP ALA HIS ILE GLU VAL ASN ILE THR TYR ALA GLU SEQRES 7 A 573 TYR PHE GLU MET SER VAL ARG LEU ALA GLU ALA MET LYS SEQRES 8 A 573 ARG TYR GLY LEU ASN THR ASN HIS ARG ILE VAL VAL CYS SEQRES 9 A 573 SER GLU ASN SER LEU GLN PHE PHE MET PRO VAL LEU GLY SEQRES 10 A 573 ALA LEU PHE ILE GLY VAL ALA VAL ALA PRO ALA ASN ASP SEQRES 11 A 573 ILE TYR ASN GLU ARG GLU LEU LEU ASN SER MET ASN ILE SEQRES 12 A 573 SER GLN PRO THR VAL VAL PHE VAL SER LYS LYS GLY LEU SEQRES 13 A 573 GLN LYS ILE LEU ASN VAL GLN LYS LYS LEU PRO ILE ILE SEQRES 14 A 573 GLN LYS ILE ILE ILE MET ASP SER LYS THR ASP TYR GLN SEQRES 15 A 573 GLY PHE GLN SER MET TYR THR PHE VAL THR SER HIS LEU SEQRES 16 A 573 PRO PRO GLY PHE ASN GLU TYR ASP PHE VAL PRO GLU SER SEQRES 17 A 573 PHE ASP ARG ASP LYS THR ILE ALA LEU ILE MET ASN SER SEQRES 18 A 573 SER GLY SER THR GLY LEU PRO LYS GLY VAL ALA LEU PRO SEQRES 19 A 573 HIS ARG THR ALA CYS VAL ARG PHE SER HIS ALA ARG ASP SEQRES 20 A 573 PRO ILE PHE GLY ASN GLN ILE ILE PRO ASP THR ALA ILE SEQRES 21 A 573 LEU SER VAL VAL PRO PHE HIS HIS GLY PHE GLY MET PHE SEQRES 22 A 573 THR THR LEU GLY TYR LEU ILE CYS GLY PHE ARG VAL VAL SEQRES 23 A 573 LEU MET TYR ARG PHE GLU GLU GLU LEU PHE LEU ARG SER SEQRES 24 A 573 LEU GLN ASP TYR LYS ILE GLN SER ALA LEU LEU VAL PRO SEQRES 25 A 573 THR LEU PHE SER PHE PHE ALA LYS SER THR LEU ILE ASP SEQRES 26 A 573 LYS TYR ASP LEU SER ASN LEU HIS GLU ILE ALA SER GLY SEQRES 27 A 573 GLY ALA PRO LEU SER LYS GLU VAL GLY GLU ALA VAL ALA SEQRES 28 A 573 LYS ARG PHE HIS LEU PRO GLY ILE ARG GLN GLY TYR GLY SEQRES 29 A 573 LEU THR GLU THR THR SER ALA ILE LEU ILE THR PRO GLU SEQRES 30 A 573 GLY ASP ASP LYS PRO GLY ALA VAL GLY LYS VAL VAL PRO SEQRES 31 A 573 PHE PHE GLU ALA LYS VAL VAL ASP LEU ASP THR GLY LYS SEQRES 32 A 573 THR LEU GLY VAL ASN GLN ARG GLY GLU LEU CYS VAL ARG SEQRES 33 A 573 GLY PRO MET ILE MET SER GLY TYR VAL ASN ASN PRO GLU SEQRES 34 A 573 ALA THR ASN ALA LEU ILE ASP LYS ASP GLY TRP LEU HIS SEQRES 35 A 573 SER GLY ASP ILE ALA TYR TRP ASP GLU ASP GLU HIS PHE SEQRES 36 A 573 PHE ILE VAL ASP ARG LEU LYS SER LEU ILE LYS TYR LYS SEQRES 37 A 573 GLY TYR GLN VAL ALA PRO ALA GLU LEU GLU SER ILE LEU SEQRES 38 A 573 LEU GLN HIS PRO ASN ILE PHE ASP ALA GLY VAL ALA GLY SEQRES 39 A 573 LEU PRO ASP ASP ASP ALA GLY GLU LEU PRO ALA ALA VAL SEQRES 40 A 573 VAL VAL LEU GLU HIS GLY LYS THR MET THR GLU LYS GLU SEQRES 41 A 573 ILE VAL ASP TYR VAL ALA SER GLN VAL THR THR ALA LYS SEQRES 42 A 573 LYS LEU ARG GLY GLY VAL VAL PHE VAL ASP GLU VAL PRO SEQRES 43 A 573 LYS GLY LEU THR GLY LYS LEU ASP ALA ARG LYS ILE ARG SEQRES 44 A 573 GLU ILE LEU ILE LYS ALA LYS LYS GLY GLY LYS SER LYS SEQRES 45 A 573 LEU FORMUL 2 HOH *196(H2 O) HELIX 1 AA1 THR A 21 LEU A 35 1 15 HELIX 2 AA2 TYR A 53 GLY A 71 1 19 HELIX 3 AA3 PHE A 88 ILE A 98 1 11 HELIX 4 AA4 ASN A 110 GLN A 122 1 13 HELIX 5 AA5 GLY A 132 LYS A 141 1 10 HELIX 6 AA6 MET A 164 LEU A 172 1 9 HELIX 7 AA7 HIS A 212 ASP A 224 1 13 HELIX 8 AA8 HIS A 245 CYS A 258 1 14 HELIX 9 AA9 GLU A 269 TYR A 280 1 12 HELIX 10 AB1 VAL A 288 SER A 298 1 11 HELIX 11 AB2 LEU A 300 TYR A 304 5 5 HELIX 12 AB3 SER A 320 PHE A 331 1 12 HELIX 13 AB4 LEU A 342 THR A 346 5 5 HELIX 14 AB5 ASN A 404 ALA A 410 1 7 HELIX 15 AB6 ASP A 436 SER A 440 5 5 HELIX 16 AB7 ALA A 450 GLN A 460 1 11 HELIX 17 AB8 THR A 494 SER A 504 1 11 HELIX 18 AB9 GLN A 505 VAL A 506 5 2 HELIX 19 AC1 THR A 507 LYS A 511 5 5 HELIX 20 AC2 ASP A 531 LYS A 543 1 13 SHEET 1 AA1 5 LYS A 8 LYS A 9 0 SHEET 2 AA1 5 GLU A 370 VAL A 374 -1 O ALA A 371 N LYS A 8 SHEET 3 AA1 5 GLY A 388 ARG A 393 -1 O CYS A 391 N LYS A 372 SHEET 4 AA1 5 LEU A 418 TRP A 426 -1 O LEU A 418 N VAL A 392 SHEET 5 AA1 5 PHE A 432 ILE A 434 -1 O PHE A 433 N TYR A 425 SHEET 1 AA2 6 ASN A 50 THR A 52 0 SHEET 2 AA2 6 ILE A 40 ASP A 44 -1 N PHE A 42 O ILE A 51 SHEET 3 AA2 6 ARG A 261 LEU A 264 1 O LEU A 264 N THR A 43 SHEET 4 AA2 6 ALA A 236 VAL A 240 1 N ILE A 237 O VAL A 263 SHEET 5 AA2 6 SER A 284 LEU A 287 1 O SER A 284 N LEU A 238 SHEET 6 AA2 6 GLU A 311 ALA A 313 1 O ALA A 313 N ALA A 285 SHEET 1 AA3 5 ALA A 101 ALA A 105 0 SHEET 2 AA3 5 ARG A 77 CYS A 81 1 N VAL A 80 O ALA A 105 SHEET 3 AA3 5 VAL A 125 VAL A 128 1 O PHE A 127 N CYS A 81 SHEET 4 AA3 5 LYS A 148 ILE A 151 1 O ILE A 150 N VAL A 126 SHEET 5 AA3 5 GLN A 162 SER A 163 1 O GLN A 162 N ILE A 151 SHEET 1 AA4 3 ILE A 192 ASN A 197 0 SHEET 2 AA4 3 GLY A 207 PRO A 211 -1 O VAL A 208 N MET A 196 SHEET 3 AA4 3 GLY A 400 TYR A 401 -1 O GLY A 400 N ALA A 209 SHEET 1 AA5 3 GLY A 339 TYR A 340 0 SHEET 2 AA5 3 LEU A 350 ILE A 351 -1 O LEU A 350 N TYR A 340 SHEET 3 AA5 3 LYS A 364 VAL A 365 -1 O LYS A 364 N ILE A 351 SHEET 1 AA6 2 ILE A 442 TYR A 444 0 SHEET 2 AA6 2 TYR A 447 VAL A 449 -1 O TYR A 447 N TYR A 444 SHEET 1 AA7 3 ILE A 464 PRO A 473 0 SHEET 2 AA7 3 GLU A 479 LEU A 487 -1 O VAL A 486 N ASP A 466 SHEET 3 AA7 3 GLY A 515 PHE A 518 1 O VAL A 517 N ALA A 483 CISPEP 1 ASP A 3 ALA A 4 0 6.17 CRYST1 117.967 117.967 95.681 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010451 0.00000