HEADER TRANSCRIPTION 23-SEP-15 5DXQ TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH THE CYCLOFENIL DERIVATIVE 4,4'-[(1S,5S)-BICYCLO[3.3.1]NON-9- TITLE 3 YLIDENEMETHANEDIYL]DIPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 27-SEP-23 5DXQ 1 REMARK REVDAT 1 04-MAY-16 5DXQ 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,J.NOWAK,N.J.WRIGHT,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTIVE FEATURES OF LIGAND-SPECIFIC SIGNALING THROUGH THE JRNL TITL 2 ESTROGEN RECEPTOR. JRNL REF MOL.SYST.BIOL. V. 12 864 2016 JRNL REFN ESSN 1744-4292 JRNL PMID 27107013 JRNL DOI 10.15252/MSB.20156701 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1690 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 15667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1989 - 5.3350 0.98 1504 164 0.1800 0.2137 REMARK 3 2 5.3350 - 4.2355 0.99 1490 173 0.1620 0.2133 REMARK 3 3 4.2355 - 3.7004 0.96 1463 158 0.1619 0.2010 REMARK 3 4 3.7004 - 3.3622 0.98 1463 175 0.1853 0.2159 REMARK 3 5 3.3622 - 3.1213 0.97 1465 160 0.2113 0.2796 REMARK 3 6 3.1213 - 2.9373 0.96 1452 148 0.2248 0.2805 REMARK 3 7 2.9373 - 2.7902 0.94 1385 159 0.2262 0.2808 REMARK 3 8 2.7902 - 2.6688 0.86 1317 141 0.2402 0.2434 REMARK 3 9 2.6688 - 2.5660 0.75 1096 130 0.2392 0.3065 REMARK 3 10 2.5660 - 2.4775 0.57 874 99 0.2348 0.2822 REMARK 3 11 2.4775 - 2.4000 0.39 576 75 0.2289 0.3362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3852 REMARK 3 ANGLE : 0.542 5223 REMARK 3 CHIRALITY : 0.020 627 REMARK 3 PLANARITY : 0.002 645 REMARK 3 DIHEDRAL : 12.277 1389 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6782 17.2815 -5.9294 REMARK 3 T TENSOR REMARK 3 T11: 0.5367 T22: 0.9179 REMARK 3 T33: 0.3805 T12: 0.6013 REMARK 3 T13: -0.1080 T23: 0.2632 REMARK 3 L TENSOR REMARK 3 L11: 1.2225 L22: 1.5593 REMARK 3 L33: 0.3273 L12: -0.4216 REMARK 3 L13: 0.6246 L23: -0.1006 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: -0.0003 S13: 0.0493 REMARK 3 S21: -0.2096 S22: 0.0750 S23: 0.4044 REMARK 3 S31: -0.1900 S32: -0.3863 S33: 0.1168 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8168 -3.0719 -6.9225 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.3224 REMARK 3 T33: 0.2136 T12: 0.0893 REMARK 3 T13: 0.0612 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 2.6786 L22: 2.4166 REMARK 3 L33: 3.9219 L12: 1.3242 REMARK 3 L13: 0.1277 L23: -1.0173 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.0111 S13: -0.5387 REMARK 3 S21: -0.4812 S22: -0.3614 S23: -0.2920 REMARK 3 S31: 0.1929 S32: 0.2363 S33: 0.3093 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1362 3.0856 -0.8836 REMARK 3 T TENSOR REMARK 3 T11: 0.1293 T22: 0.2301 REMARK 3 T33: 0.1175 T12: 0.0179 REMARK 3 T13: 0.0059 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 5.7508 L22: 2.4602 REMARK 3 L33: 3.9147 L12: -0.6136 REMARK 3 L13: -0.0465 L23: 1.3815 REMARK 3 S TENSOR REMARK 3 S11: 0.0513 S12: 0.3208 S13: -0.1233 REMARK 3 S21: -0.1244 S22: 0.1958 S23: -0.1809 REMARK 3 S31: -0.0453 S32: 0.2087 S33: -0.1821 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 364 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6406 12.1962 4.7029 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.2457 REMARK 3 T33: 0.1438 T12: 0.0442 REMARK 3 T13: 0.0642 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 4.3307 L22: 3.3564 REMARK 3 L33: 4.0168 L12: 0.6630 REMARK 3 L13: 0.1644 L23: 0.4087 REMARK 3 S TENSOR REMARK 3 S11: 0.1715 S12: 0.3282 S13: 0.6052 REMARK 3 S21: 0.0789 S22: -0.0458 S23: 0.0751 REMARK 3 S31: -0.6780 S32: -0.3589 S33: -0.1044 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8436 -9.4188 -2.9124 REMARK 3 T TENSOR REMARK 3 T11: 0.4524 T22: 0.3482 REMARK 3 T33: 0.3063 T12: -0.1613 REMARK 3 T13: 0.0701 T23: -0.1172 REMARK 3 L TENSOR REMARK 3 L11: 4.4507 L22: 1.9320 REMARK 3 L33: 1.9745 L12: 2.2744 REMARK 3 L13: -0.9392 L23: 0.4343 REMARK 3 S TENSOR REMARK 3 S11: -0.3221 S12: 0.6438 S13: -0.8053 REMARK 3 S21: 0.0370 S22: -0.2350 S23: 0.3380 REMARK 3 S31: 0.9130 S32: -0.7382 S33: 0.3789 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1958 -13.6372 8.5560 REMARK 3 T TENSOR REMARK 3 T11: 1.1910 T22: 0.2972 REMARK 3 T33: 0.6169 T12: 0.2537 REMARK 3 T13: 0.0404 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.3315 L22: 4.9302 REMARK 3 L33: 4.6290 L12: 1.3614 REMARK 3 L13: -0.7932 L23: 3.0235 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: -0.1386 S13: -0.7453 REMARK 3 S21: 0.9761 S22: 0.1401 S23: -0.8779 REMARK 3 S31: 0.6391 S32: 0.5276 S33: -0.1555 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2497 -0.0078 3.9549 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.4736 REMARK 3 T33: 0.1560 T12: -0.0432 REMARK 3 T13: 0.0394 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.2821 L22: 3.3273 REMARK 3 L33: 3.3418 L12: -0.4695 REMARK 3 L13: -0.2499 L23: 0.6517 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.4285 S13: -0.2363 REMARK 3 S21: 0.1294 S22: -0.3635 S23: 0.2718 REMARK 3 S31: 0.5016 S32: -1.0382 S33: 0.2092 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9449 17.3550 14.7961 REMARK 3 T TENSOR REMARK 3 T11: 0.7498 T22: 0.4758 REMARK 3 T33: 0.5638 T12: 0.0781 REMARK 3 T13: 0.0437 T23: -0.1685 REMARK 3 L TENSOR REMARK 3 L11: 3.5916 L22: 3.6693 REMARK 3 L33: 9.6875 L12: -2.2545 REMARK 3 L13: -0.6599 L23: 5.0430 REMARK 3 S TENSOR REMARK 3 S11: 0.2286 S12: -0.9635 S13: 1.5416 REMARK 3 S21: 1.7439 S22: -0.1595 S23: 0.0401 REMARK 3 S31: -0.8281 S32: -0.6714 S33: 0.0716 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5604 14.6559 3.1924 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.9569 REMARK 3 T33: 0.3791 T12: 0.4330 REMARK 3 T13: -0.0310 T23: 0.1986 REMARK 3 L TENSOR REMARK 3 L11: 3.7107 L22: 0.3020 REMARK 3 L33: 1.7572 L12: -0.0227 REMARK 3 L13: 1.5609 L23: -0.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: 0.7444 S13: 0.4745 REMARK 3 S21: -0.3481 S22: -0.2876 S23: 0.2651 REMARK 3 S31: -0.4257 S32: -0.4472 S33: 0.2825 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 497 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0656 2.8866 10.5836 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.2319 REMARK 3 T33: 0.1239 T12: -0.0044 REMARK 3 T13: -0.0448 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.3837 L22: 2.2616 REMARK 3 L33: 2.8883 L12: 0.1858 REMARK 3 L13: -0.9897 L23: 0.2740 REMARK 3 S TENSOR REMARK 3 S11: -0.1269 S12: -0.0610 S13: -0.0466 REMARK 3 S21: 0.2165 S22: -0.0241 S23: -0.2302 REMARK 3 S31: 0.1908 S32: 0.0076 S33: 0.1376 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 304 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8598 1.0457 25.8925 REMARK 3 T TENSOR REMARK 3 T11: 0.1865 T22: 0.9392 REMARK 3 T33: 0.5348 T12: -0.0978 REMARK 3 T13: 0.0079 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 5.5825 L22: 2.5897 REMARK 3 L33: 5.1611 L12: -1.6959 REMARK 3 L13: 0.7326 L23: -0.3908 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: 0.7828 S13: -0.8862 REMARK 3 S21: -0.2593 S22: 0.2985 S23: 0.7999 REMARK 3 S31: 0.4172 S32: -1.2206 S33: -0.1880 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 323 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5498 10.7538 43.7628 REMARK 3 T TENSOR REMARK 3 T11: 0.3621 T22: 0.5222 REMARK 3 T33: 0.3385 T12: 0.0698 REMARK 3 T13: -0.0340 T23: -0.1773 REMARK 3 L TENSOR REMARK 3 L11: 0.6501 L22: 3.5726 REMARK 3 L33: 4.0107 L12: -1.3052 REMARK 3 L13: -1.0929 L23: 0.7721 REMARK 3 S TENSOR REMARK 3 S11: -0.1631 S12: -0.0980 S13: 0.1231 REMARK 3 S21: 0.3643 S22: 0.5636 S23: -0.8863 REMARK 3 S31: -0.3015 S32: 1.1437 S33: -0.3046 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 339 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2132 -0.7036 31.5601 REMARK 3 T TENSOR REMARK 3 T11: 0.3612 T22: 0.1959 REMARK 3 T33: 0.1368 T12: -0.0007 REMARK 3 T13: 0.0511 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 3.0011 L22: 3.6783 REMARK 3 L33: 4.6240 L12: -1.5920 REMARK 3 L13: -0.9172 L23: 0.1955 REMARK 3 S TENSOR REMARK 3 S11: -0.2349 S12: -0.1779 S13: -0.4641 REMARK 3 S21: -0.0723 S22: 0.0456 S23: 0.2487 REMARK 3 S31: 0.8073 S32: 0.0269 S33: 0.0692 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 395 THROUGH 438 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6487 16.9116 30.4663 REMARK 3 T TENSOR REMARK 3 T11: 0.4065 T22: 0.2652 REMARK 3 T33: 0.2900 T12: -0.1531 REMARK 3 T13: 0.0539 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 2.6901 L22: 5.0473 REMARK 3 L33: 6.2259 L12: 0.1290 REMARK 3 L13: -1.0633 L23: 0.1696 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: -0.2484 S13: 0.4129 REMARK 3 S21: 0.1634 S22: 0.2273 S23: -0.5504 REMARK 3 S31: -1.1064 S32: 0.5761 S33: -0.0206 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 439 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5448 4.8271 18.9772 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.4962 REMARK 3 T33: 0.1549 T12: -0.0033 REMARK 3 T13: 0.0305 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 4.0948 L22: 2.1266 REMARK 3 L33: 4.9635 L12: 0.3678 REMARK 3 L13: 0.9896 L23: -0.8648 REMARK 3 S TENSOR REMARK 3 S11: 0.0639 S12: 0.2147 S13: -0.1375 REMARK 3 S21: -0.0756 S22: -0.1199 S23: 0.1630 REMARK 3 S31: 0.0999 S32: -1.2350 S33: -0.0693 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 497 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1859 3.9204 23.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.1598 T22: 0.1850 REMARK 3 T33: 0.1272 T12: 0.0154 REMARK 3 T13: 0.0617 T23: -0.0501 REMARK 3 L TENSOR REMARK 3 L11: 3.6121 L22: 3.4552 REMARK 3 L33: 4.6804 L12: -0.8668 REMARK 3 L13: -0.1788 L23: -0.9061 REMARK 3 S TENSOR REMARK 3 S11: -0.1247 S12: -0.0867 S13: -0.0927 REMARK 3 S21: 0.1826 S22: 0.0482 S23: -0.3156 REMARK 3 S31: 0.0855 S32: 0.2644 S33: 0.1705 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 687 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2310 18.0821 1.4066 REMARK 3 T TENSOR REMARK 3 T11: 0.3363 T22: 0.3545 REMARK 3 T33: 0.7524 T12: -0.0932 REMARK 3 T13: 0.1854 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.5133 L22: 2.7582 REMARK 3 L33: 1.3780 L12: -0.5978 REMARK 3 L13: -1.2588 L23: -0.2485 REMARK 3 S TENSOR REMARK 3 S11: -0.1545 S12: 0.0602 S13: 0.1464 REMARK 3 S21: -0.0656 S22: -0.3261 S23: -0.1459 REMARK 3 S31: -0.2174 S32: 0.3044 S33: 0.3438 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 688 THROUGH 697 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0980 -12.8542 36.2965 REMARK 3 T TENSOR REMARK 3 T11: 0.9002 T22: 0.1297 REMARK 3 T33: 0.6437 T12: -0.1248 REMARK 3 T13: 0.1947 T23: 0.1492 REMARK 3 L TENSOR REMARK 3 L11: 0.3979 L22: 0.3277 REMARK 3 L33: 1.5344 L12: 0.2259 REMARK 3 L13: 0.7747 L23: 0.5193 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.6777 S13: -0.9759 REMARK 3 S21: 1.0438 S22: -0.2800 S23: 0.2872 REMARK 3 S31: 0.4891 S32: -0.2378 S33: 0.0889 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.80300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2B1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.53500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 SER A 305 REMARK 465 ASP A 332 REMARK 465 PRO A 333 REMARK 465 THR A 334 REMARK 465 ARG A 335 REMARK 465 PRO A 336 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 VAL A 533 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 LYS B 416 REMARK 465 CYS B 417 REMARK 465 PHE B 461 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 SER B 468 REMARK 465 LEU B 469 REMARK 465 GLU B 470 REMARK 465 GLU B 471 REMARK 465 LEU B 549 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 HIS D 687 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 306 CG CD1 CD2 REMARK 470 LEU A 310 CG CD1 CD2 REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 412 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 413 CG OD1 ND2 REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 MET A 437 CG SD CE REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 ASP A 473 CG OD1 OD2 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 304 CG OD1 ND2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 THR B 334 OG1 CG2 REMARK 470 ARG B 335 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 GLU B 419 CG CD OE1 OE2 REMARK 470 MET B 421 CG SD CE REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 MET B 437 CG SD CE REMARK 470 ARG B 477 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 526 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ASN B 532 CG OD1 ND2 REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 687 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 696 CG OD1 OD2 REMARK 470 LYS D 688 CG CD CE NZ REMARK 470 HIS D 691 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 530 47.75 -84.14 REMARK 500 LYS A 531 -11.24 -164.34 REMARK 500 PRO B 333 46.61 -68.50 REMARK 500 THR B 334 -90.19 -91.47 REMARK 500 PRO B 336 -173.21 -69.46 REMARK 500 VAL B 533 -96.98 -69.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5HZ A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5HZ B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DXK RELATED DB: PDB REMARK 900 5DXK CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 CYCLOFENIL DERIVATIVE DBREF 5DXQ A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DXQ B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DXQ C 686 699 UNP Q15596 NCOA2_HUMAN 686 699 DBREF 5DXQ D 686 699 UNP Q15596 NCOA2_HUMAN 686 699 SEQADV 5DXQ SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5DXQ SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 5HZ A 900 24 HET 5HZ B 901 24 HETNAM 5HZ 4,4'-[(1S,5S)-BICYCLO[3.3.1]NON-9- HETNAM 2 5HZ YLIDENEMETHANEDIYL]DIPHENOL FORMUL 5 5HZ 2(C22 H24 O2) FORMUL 7 HOH *102(H2 O) HELIX 1 AA1 THR A 311 ALA A 322 1 12 HELIX 2 AA2 SER A 338 LYS A 362 1 25 HELIX 3 AA3 THR A 371 SER A 395 1 25 HELIX 4 AA4 ASN A 413 LYS A 416 5 4 HELIX 5 AA5 MET A 421 ASN A 439 1 19 HELIX 6 AA6 GLN A 441 SER A 456 1 16 HELIX 7 AA7 ASP A 473 GLY A 494 1 22 HELIX 8 AA8 THR A 496 CYS A 530 1 35 HELIX 9 AA9 SER A 537 ALA A 546 1 10 HELIX 10 AB1 THR B 311 ALA B 322 1 12 HELIX 11 AB2 SER B 338 LYS B 362 1 25 HELIX 12 AB3 THR B 371 SER B 395 1 25 HELIX 13 AB4 GLY B 420 ASN B 439 1 20 HELIX 14 AB5 GLN B 441 SER B 456 1 16 HELIX 15 AB6 ASP B 473 ALA B 493 1 21 HELIX 16 AB7 THR B 496 LYS B 531 1 36 HELIX 17 AB8 SER B 537 ALA B 546 1 10 HELIX 18 AB9 LYS C 688 ASP C 696 1 9 HELIX 19 AC1 ILE D 689 ASP D 696 1 8 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 408 N ALA A 405 SHEET 1 AA2 2 LEU B 402 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 LEU B 410 -1 O LEU B 408 N ALA B 405 CISPEP 1 ASP D 696 SER D 697 0 -1.65 SITE 1 AC1 9 LEU A 346 THR A 347 ALA A 350 GLU A 353 SITE 2 AC1 9 MET A 388 ARG A 394 MET A 421 LEU A 536 SITE 3 AC1 9 LEU A 540 SITE 1 AC2 10 LEU B 346 THR B 347 ALA B 350 GLU B 353 SITE 2 AC2 10 LEU B 387 MET B 388 ARG B 394 ILE B 424 SITE 3 AC2 10 LEU B 536 LEU B 540 CRYST1 53.910 81.070 58.340 90.00 111.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018549 0.000000 0.007154 0.00000 SCALE2 0.000000 0.012335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018371 0.00000