HEADER DE NOVO PROTEIN 24-SEP-15 5DXV TITLE CRYSTAL STRUCTURE OF RETHREADED DHFR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETHREADED DHFR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN DESIGN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.FAHAM REVDAT 1 08-JUN-16 5DXV 0 JRNL AUTH S.AGAH,S.POULOS,A.YU,I.KUCHARSKA,S.FAHAM JRNL TITL PROTEIN RETHREADING: A NOVEL APPROACH TO PROTEIN DESIGN. JRNL REF SCI REP V. 6 26847 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27229326 JRNL DOI 10.1038/SREP26847 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 38173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2025 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1541 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : -2.26000 REMARK 3 B33 (A**2) : 2.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2450 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2255 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3334 ; 2.284 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5187 ; 1.005 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 6.735 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;28.130 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;12.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.596 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2716 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 562 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000214001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 103. REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M LICL2, 0.1M SODIUM ACETATE, AND REMARK 280 30% PEG 6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.59350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.59350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.40850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.02700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.40850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.02700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.59350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.40850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.02700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.59350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.40850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.02700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 361 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 379 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 MET B 0 REMARK 465 VAL B 13 REMARK 465 ILE B 14 REMARK 465 GLY B 15 REMARK 465 ASP B 16 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 GLN B 40 CG CD OE1 NE2 REMARK 470 ASP B 87 CG OD1 OD2 REMARK 470 GLU B 149 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 EDO A 203 O1 EDO A 203 3654 1.92 REMARK 500 O HOH A 366 O HOH B 401 5545 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 16 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 146 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 146 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 61 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 61 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 133 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 86 112.08 -163.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 84 THR B 85 -132.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide TYR B 139 and CME B REMARK 800 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CME B 140 and PHE B REMARK 800 141 DBREF 5DXV A 0 155 PDB 5DXV 5DXV 0 155 DBREF 5DXV B 0 155 PDB 5DXV 5DXV 0 155 SEQRES 1 A 156 MET ALA ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG SEQRES 2 A 156 VAL ILE GLY ASP THR HIS PHE PRO ASP TYR GLU PRO ASP SEQRES 3 A 156 ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA ASP SEQRES 4 A 156 ALA GLN ASN PRO ALA ASP LEU ALA TRP PHE LYS ARG ASN SEQRES 5 A 156 THR LEU ASP LYS PRO VAL ILE MET GLY ARG HIS THR TRP SEQRES 6 A 156 GLU SER ILE GLY ARG PRO LEU PRO GLY ARG LYS ASN ILE SEQRES 7 A 156 ILE LEU SER SER GLN PRO GLY THR ASP ASP ARG VAL THR SEQRES 8 A 156 TRP VAL LYS SER VAL ASP GLU ALA ILE ALA ALA CYS GLY SEQRES 9 A 156 ASP VAL PRO GLU ILE MET VAL ILE GLY GLY GLY ARG VAL SEQRES 10 A 156 TYR GLU GLN PHE LEU PRO LYS ALA GLN LYS LEU TYR LEU SEQRES 11 A 156 THR HIS ILE ASP ALA GLU GLY HIS SER TYR CME PHE GLU SEQRES 12 A 156 ILE LEU GLU ARG ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 156 MET ALA ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG SEQRES 2 B 156 VAL ILE GLY ASP THR HIS PHE PRO ASP TYR GLU PRO ASP SEQRES 3 B 156 ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA ASP SEQRES 4 B 156 ALA GLN ASN PRO ALA ASP LEU ALA TRP PHE LYS ARG ASN SEQRES 5 B 156 THR LEU ASP LYS PRO VAL ILE MET GLY ARG HIS THR TRP SEQRES 6 B 156 GLU SER ILE GLY ARG PRO LEU PRO GLY ARG LYS ASN ILE SEQRES 7 B 156 ILE LEU SER SER GLN PRO GLY THR ASP ASP ARG VAL THR SEQRES 8 B 156 TRP VAL LYS SER VAL ASP GLU ALA ILE ALA ALA CYS GLY SEQRES 9 B 156 ASP VAL PRO GLU ILE MET VAL ILE GLY GLY GLY ARG VAL SEQRES 10 B 156 TYR GLU GLN PHE LEU PRO LYS ALA GLN LYS LEU TYR LEU SEQRES 11 B 156 THR HIS ILE ASP ALA GLU GLY HIS SER TYR CME PHE GLU SEQRES 12 B 156 ILE LEU GLU ARG ARG LEU GLU HIS HIS HIS HIS HIS HIS HET CME A 140 10 HET CME B 140 10 HET NAP A 201 48 HET PEG A 202 7 HET EDO A 203 4 HET CL A 204 1 HET PEG B 301 7 HET EDO B 302 4 HET CL B 303 1 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 PEG 2(C4 H10 O3) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 CL 2(CL 1-) FORMUL 10 HOH *153(H2 O) HELIX 1 AA1 GLU A 23 ASP A 25 5 3 HELIX 2 AA2 PRO A 42 LEU A 53 1 12 HELIX 3 AA3 ARG A 61 GLY A 68 1 8 HELIX 4 AA4 SER A 94 GLY A 103 1 10 HELIX 5 AA5 GLY A 113 LEU A 121 1 9 HELIX 6 AA6 GLU B 23 ASP B 25 5 3 HELIX 7 AA7 PRO B 42 LEU B 53 1 12 HELIX 8 AA8 ARG B 61 GLY B 68 1 8 HELIX 9 AA9 SER B 94 CYS B 102 1 9 HELIX 10 AB1 GLY B 113 LEU B 121 1 9 HELIX 11 AB2 PRO B 122 ALA B 124 5 3 SHEET 1 AA1 8 TRP A 27 PHE A 34 0 SHEET 2 AA1 8 SER A 138 ARG A 146 -1 O GLU A 145 N GLU A 28 SHEET 3 AA1 8 ALA A 124 ILE A 132 -1 N LEU A 129 O GLU A 142 SHEET 4 AA1 8 ILE A 2 ALA A 9 1 N ILE A 2 O GLN A 125 SHEET 5 AA1 8 ILE A 108 GLY A 112 1 O ILE A 108 N SER A 3 SHEET 6 AA1 8 VAL A 57 GLY A 60 1 N ILE A 58 O MET A 109 SHEET 7 AA1 8 ASN A 76 LEU A 79 1 O ILE A 77 N VAL A 57 SHEET 8 AA1 8 THR A 90 VAL A 92 1 O THR A 90 N ILE A 78 SHEET 1 AA2 8 TRP B 27 PHE B 34 0 SHEET 2 AA2 8 SER B 138 ARG B 146 -1 O ILE B 143 N VAL B 30 SHEET 3 AA2 8 LYS B 126 ILE B 132 -1 N LEU B 129 O GLU B 142 SHEET 4 AA2 8 ILE B 2 ALA B 9 1 N LEU B 8 O THR B 130 SHEET 5 AA2 8 ILE B 108 GLY B 112 1 O ILE B 108 N SER B 3 SHEET 6 AA2 8 VAL B 57 GLY B 60 1 N ILE B 58 O MET B 109 SHEET 7 AA2 8 ASN B 76 LEU B 79 1 O ILE B 77 N VAL B 57 SHEET 8 AA2 8 THR B 90 VAL B 92 1 O THR B 90 N ILE B 78 LINK C TYR A 139 N CME A 140 1555 1555 1.35 LINK C CME A 140 N PHE A 141 1555 1555 1.31 LINK C TYR B 139 N CME B 140 1555 1555 1.37 LINK C CME B 140 N PHE B 141 1555 1555 1.32 CISPEP 1 GLY A 112 GLY A 113 0 1.59 CISPEP 2 GLY B 112 GLY B 113 0 8.98 SITE 1 AC1 22 ALA A 6 ALA A 7 THR A 17 GLY A 60 SITE 2 AC1 22 ARG A 61 HIS A 62 THR A 63 LEU A 79 SITE 3 AC1 22 SER A 80 SER A 81 LYS A 93 ILE A 111 SITE 4 AC1 22 GLY A 113 GLY A 114 ARG A 115 VAL A 116 SITE 5 AC1 22 TYR A 117 GLN A 119 HOH A 335 HOH A 339 SITE 6 AC1 22 HOH A 356 HOH A 361 SITE 1 AC2 1 LEU A 45 SITE 1 AC3 3 GLU A 33 ALA A 46 ARG A 50 SITE 1 AC4 3 GLU A 23 TRP A 27 HOH A 372 SITE 1 AC5 1 ALA B 46 SITE 1 AC6 4 GLY B 60 HIS B 62 THR B 63 GLY B 113 SITE 1 AC7 12 PHE A 34 ASP A 36 GLU B 33 PHE B 34 SITE 2 AC7 12 HIS B 35 THR B 130 HIS B 131 ILE B 132 SITE 3 AC7 12 HIS B 137 SER B 138 PHE B 141 GLU B 142 SITE 1 AC8 13 ASP A 36 PHE B 31 SER B 32 GLU B 33 SITE 2 AC8 13 PHE B 34 HIS B 35 ALA B 43 ASP B 44 SITE 3 AC8 13 LEU B 129 THR B 130 HIS B 131 TYR B 139 SITE 4 AC8 13 GLU B 142 CRYST1 44.817 120.054 111.187 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008994 0.00000