HEADER FLUORESCENT PROTEIN 24-SEP-15 5DY6 TITLE ENHANCED SUPERFOLDER GFP WITH DBCO AT 148 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLICK CHEMISTRY, NON-CANONICAL AMINO ACIDS, SUPERFOLDER GFP, DBCO- KEYWDS 2 AMINE, CHROMOPHORE, FLUORECENCE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.D.JONES,P.J.RIZKALLAH,H.L.WORTHY REVDAT 5 30-MAY-18 5DY6 1 SEQADV REVDAT 4 29-NOV-17 5DY6 1 REMARK REVDAT 3 10-MAY-17 5DY6 1 JRNL REVDAT 2 19-OCT-16 5DY6 1 JRNL REVDAT 1 13-JUL-16 5DY6 0 JRNL AUTH A.M.HARTLEY,H.L.WORTHY,S.C.REDDINGTON,P.J.RIZKALLAH, JRNL AUTH 2 D.D.JONES JRNL TITL MOLECULAR BASIS FOR FUNCTIONAL SWITCHING OF GFP BY TWO JRNL TITL 2 DISPARATE NON-NATIVE POST-TRANSLATIONAL MODIFICATIONS OF A JRNL TITL 3 PHENYL AZIDE REACTION HANDLE. JRNL REF CHEM SCI V. 7 6484 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 28451106 JRNL DOI 10.1039/C6SC00944A REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 705 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 952 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.4550 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.5070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3651 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.97000 REMARK 3 B22 (A**2) : -3.19000 REMARK 3 B33 (A**2) : -4.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.411 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.494 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 63.073 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3747 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3502 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5068 ; 2.113 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8069 ; 1.428 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 8.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;40.224 ;24.915 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 626 ;19.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.326 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 544 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4229 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 867 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1792 ; 3.605 ; 7.095 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1791 ; 3.606 ; 7.095 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2233 ; 5.583 ;10.649 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 63 B 6 63 5608 0.110 0.050 REMARK 3 2 A 68 232 B 68 232 17782 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3901 132.9653 5.0969 REMARK 3 T TENSOR REMARK 3 T11: 0.2329 T22: 0.1249 REMARK 3 T33: 0.0153 T12: 0.0820 REMARK 3 T13: 0.0060 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 4.4201 L22: 7.3939 REMARK 3 L33: 6.3542 L12: 0.4481 REMARK 3 L13: 0.2071 L23: -1.6732 REMARK 3 S TENSOR REMARK 3 S11: -0.1026 S12: 0.1255 S13: -0.0908 REMARK 3 S21: 1.0502 S22: 0.3065 S23: -0.0923 REMARK 3 S31: -0.3615 S32: -0.1438 S33: -0.2039 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 300 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3069 87.9057 24.6682 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.2712 REMARK 3 T33: 0.0181 T12: 0.1109 REMARK 3 T13: -0.0001 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 3.3553 L22: 6.4407 REMARK 3 L33: 6.9992 L12: 0.2627 REMARK 3 L13: -0.0995 L23: -1.5823 REMARK 3 S TENSOR REMARK 3 S11: -0.2024 S12: -0.1507 S13: -0.1158 REMARK 3 S21: 0.8554 S22: 0.4048 S23: -0.0406 REMARK 3 S31: 0.1737 S32: -0.0729 S33: -0.2024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5DY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000213685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 72.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 2.12700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PCTP BUFFER, 15% PEG 1500, PH 6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.49000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.18500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.18500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.49000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 195 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 80 -18.17 -44.89 REMARK 500 SER A 86 -39.80 -34.36 REMARK 500 ASP A 102 17.98 58.39 REMARK 500 ASP A 103 -148.27 -145.33 REMARK 500 ARG B 80 -18.22 -45.64 REMARK 500 ASP B 102 19.31 56.89 REMARK 500 ASP B 103 -148.48 -144.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 6 LEU A 7 -147.41 REMARK 500 GLY B 189 ASP B 190 -148.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 66C A 148 REMARK 800 through ASN A 149 bound to SER A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 66C B 148 REMARK 800 through ASN B 149 bound to SER B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SO4 A 301 and SO4 A REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 64 and CRO B REMARK 800 66 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CRO B 66 and VAL B REMARK 800 68 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BT0 RELATED DB: PDB REMARK 900 RELATED ID: 5BTT RELATED DB: PDB DBREF1 5DY6 A 5 232 UNP A0A059PIQ0_AEQVI DBREF2 5DY6 A A0A059PIQ0 5 232 DBREF1 5DY6 B 5 232 UNP A0A059PIQ0_AEQVI DBREF2 5DY6 B A0A059PIQ0 5 232 SEQADV 5DY6 ARG A 30 UNP A0A059PIQ SER 30 CONFLICT SEQADV 5DY6 CRO A 61 UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 5DY6 CRO A 61 UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 5DY6 CRO A 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 5DY6 SER A 72 UNP A0A059PIQ ALA 72 CONFLICT SEQADV 5DY6 ARG A 80 UNP A0A059PIQ GLN 80 CONFLICT SEQADV 5DY6 66C A 148 UNP A0A059PIQ HIS 148 ENGINEERED MUTATION SEQADV 5DY6 VAL A 206 UNP A0A059PIQ ALA 206 CONFLICT SEQADV 5DY6 ARG B 30 UNP A0A059PIQ SER 30 CONFLICT SEQADV 5DY6 B UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 5DY6 B UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 5DY6 CRO B 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 5DY6 SER B 72 UNP A0A059PIQ ALA 72 CONFLICT SEQADV 5DY6 ARG B 80 UNP A0A059PIQ GLN 80 CONFLICT SEQADV 5DY6 66C B 148 UNP A0A059PIQ HIS 148 ENGINEERED MUTATION SEQADV 5DY6 VAL B 206 UNP A0A059PIQ ALA 206 CONFLICT SEQRES 1 A 226 GLU GLU LEU PHE THR GLY VAL VAL PRO ILE LEU VAL GLU SEQRES 2 A 226 LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE SER VAL ARG SEQRES 3 A 226 GLY GLU GLY GLU GLY ASP ALA THR ASN GLY LYS LEU THR SEQRES 4 A 226 LEU LYS PHE ILE CYS THR THR GLY LYS LEU PRO VAL PRO SEQRES 5 A 226 TRP PRO THR LEU VAL THR THR LEU CRO VAL GLN CYS PHE SEQRES 6 A 226 SER ARG TYR PRO ASP HIS MET LYS ARG HIS ASP PHE PHE SEQRES 7 A 226 LYS SER ALA MET PRO GLU GLY TYR VAL GLN GLU ARG THR SEQRES 8 A 226 ILE SER PHE LYS ASP ASP GLY THR TYR LYS THR ARG ALA SEQRES 9 A 226 GLU VAL LYS PHE GLU GLY ASP THR LEU VAL ASN ARG ILE SEQRES 10 A 226 GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE SEQRES 11 A 226 LEU GLY HIS LYS LEU GLU TYR ASN PHE ASN SER 66C ASN SEQRES 12 A 226 VAL TYR ILE THR ALA ASP LYS GLN LYS ASN GLY ILE LYS SEQRES 13 A 226 ALA ASN PHE LYS ILE ARG HIS ASN VAL GLU ASP GLY SER SEQRES 14 A 226 VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR PRO ILE SEQRES 15 A 226 GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SEQRES 16 A 226 SER THR GLN SER VAL LEU SER LYS ASP PRO ASN GLU LYS SEQRES 17 A 226 ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR ALA ALA SEQRES 18 A 226 GLY ILE THR HIS GLY SEQRES 1 B 226 GLU GLU LEU PHE THR GLY VAL VAL PRO ILE LEU VAL GLU SEQRES 2 B 226 LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE SER VAL ARG SEQRES 3 B 226 GLY GLU GLY GLU GLY ASP ALA THR ASN GLY LYS LEU THR SEQRES 4 B 226 LEU LYS PHE ILE CYS THR THR GLY LYS LEU PRO VAL PRO SEQRES 5 B 226 TRP PRO THR LEU VAL THR THR LEU CRO VAL GLN CYS PHE SEQRES 6 B 226 SER ARG TYR PRO ASP HIS MET LYS ARG HIS ASP PHE PHE SEQRES 7 B 226 LYS SER ALA MET PRO GLU GLY TYR VAL GLN GLU ARG THR SEQRES 8 B 226 ILE SER PHE LYS ASP ASP GLY THR TYR LYS THR ARG ALA SEQRES 9 B 226 GLU VAL LYS PHE GLU GLY ASP THR LEU VAL ASN ARG ILE SEQRES 10 B 226 GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE SEQRES 11 B 226 LEU GLY HIS LYS LEU GLU TYR ASN PHE ASN SER 66C ASN SEQRES 12 B 226 VAL TYR ILE THR ALA ASP LYS GLN LYS ASN GLY ILE LYS SEQRES 13 B 226 ALA ASN PHE LYS ILE ARG HIS ASN VAL GLU ASP GLY SER SEQRES 14 B 226 VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR PRO ILE SEQRES 15 B 226 GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SEQRES 16 B 226 SER THR GLN SER VAL LEU SER LYS ASP PRO ASN GLU LYS SEQRES 17 B 226 ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR ALA ALA SEQRES 18 B 226 GLY ILE THR HIS GLY HET CRO A 66 22 HET 66C A 148 35 HET CRO B 66 22 HET 66C B 148 35 HET SO4 A 301 1 HET SO4 A 302 4 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM 66C 4-[8-(BETA-ALANYL)-8,9-DIHYDRO-1H-DIBENZO[B,F][1,2, HETNAM 2 66C 3]TRIAZOLO[4,5-D]AZOCIN-1-YL]-L-PHENYLALANINE HETNAM SO4 SULFATE ION HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 1 66C 2(C27 H26 N6 O3) FORMUL 3 SO4 2(O4 S 2-) HELIX 1 AA1 ALA A 37 ASN A 39 5 3 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 ALA B 37 ASN B 39 5 3 HELIX 7 AA7 PRO B 56 VAL B 61 5 6 HELIX 8 AA8 VAL B 68 SER B 72 5 5 HELIX 9 AA9 PRO B 75 HIS B 81 5 7 HELIX 10 AB1 ASP B 82 ALA B 87 1 6 SHEET 1 AA112 VAL A 12 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O GLY A 31 N VAL A 16 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O ILE A 47 N ARG A 30 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O MET A 218 N PHE A 46 SHEET 5 AA112 HIS A 199 SER A 208 -1 N GLN A 204 O PHE A 223 SHEET 6 AA112 66C A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N GLU A 95 O GLN A 184 SHEET 10 AA112 THR A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 AA112 THR A 118 ILE A 128 -1 O GLU A 124 N ARG A 109 SHEET 12 AA112 VAL A 12 VAL A 22 1 N ASP A 21 O GLY A 127 SHEET 1 AA212 VAL B 12 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O GLY B 31 N VAL B 16 SHEET 3 AA212 LYS B 41 CYS B 48 -1 O ILE B 47 N ARG B 30 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O MET B 218 N PHE B 46 SHEET 5 AA212 HIS B 199 SER B 208 -1 N GLN B 204 O PHE B 223 SHEET 6 AA212 66C B 148 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 AA212 VAL B 176 PRO B 187 -1 O HIS B 181 N PHE B 165 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N GLU B 95 O GLN B 184 SHEET 10 AA212 THR B 105 GLU B 115 -1 O VAL B 112 N TYR B 92 SHEET 11 AA212 THR B 118 ILE B 128 -1 O GLU B 124 N ARG B 109 SHEET 12 AA212 VAL B 12 VAL B 22 1 N ASP B 21 O GLY B 127 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.29 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.33 LINK C SER A 147 N 66C A 148 1555 1555 1.33 LINK C 66C A 148 N ASN A 149 1555 1555 1.32 LINK C LEU B 64 N1 CRO B 66 1555 1555 1.30 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.32 LINK C SER B 147 N 66C B 148 1555 1555 1.33 LINK C 66C B 148 N ASN B 149 1555 1555 1.34 LINK O4 SO4 A 301 S SO4 A 302 1555 1555 1.48 CISPEP 1 MET A 88 PRO A 89 0 3.40 CISPEP 2 MET B 88 PRO B 89 0 0.90 SITE 1 AC1 13 SER A 147 VAL A 150 ASN A 164 PHE A 165 SITE 2 AC1 13 LYS A 166 TYR A 200 LEU A 201 SER A 202 SITE 3 AC1 13 THR A 203 SO4 A 301 SO4 A 302 GLU B 142 SITE 4 AC1 13 ASP B 173 SITE 1 AC2 11 GLU A 142 VAL A 171 ASP A 173 SER B 147 SITE 2 AC2 11 VAL B 150 PHE B 165 LYS B 166 TYR B 200 SITE 3 AC2 11 LEU B 201 SER B 202 THR B 203 SITE 1 AC3 4 ASN A 149 TYR A 200 GLU B 142 TYR B 143 SITE 1 AC4 15 LEU B 44 PHE B 46 LEU B 60 VAL B 61 SITE 2 AC4 15 THR B 62 THR B 63 VAL B 68 GLN B 69 SITE 3 AC4 15 GLN B 94 ARG B 96 ASN B 121 PHE B 145 SITE 4 AC4 15 THR B 203 MET B 218 GLU B 222 SITE 1 AC5 15 LEU B 42 LEU B 44 VAL B 61 THR B 62 SITE 2 AC5 15 THR B 63 LEU B 64 GLN B 69 CYS B 70 SITE 3 AC5 15 PHE B 71 GLN B 94 ARG B 96 ASN B 121 SITE 4 AC5 15 PHE B 145 THR B 203 GLU B 222 CRYST1 42.980 89.380 122.370 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023267 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008172 0.00000