HEADER TRANSCRIPTION 24-SEP-15 5DYB TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH THE CYCLOFENIL DERIVATIVE 4,4'-(3,4-DIHYDRONAPHTHALEN-2(1H)- TITLE 3 YLIDENEMETHANEDIYL)DIPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 27-SEP-23 5DYB 1 REMARK REVDAT 1 04-MAY-16 5DYB 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,J.NOWAK,N.J.WRIGHT,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTIVE FEATURES OF LIGAND-SPECIFIC SIGNALING THROUGH THE JRNL TITL 2 ESTROGEN RECEPTOR. JRNL REF MOL.SYST.BIOL. V. 12 864 2016 JRNL REFN ESSN 1744-4292 JRNL PMID 27107013 JRNL DOI 10.15252/MSB.20156701 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 20321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2573 - 5.3060 0.94 1504 151 0.1655 0.2455 REMARK 3 2 5.3060 - 4.2125 0.99 1546 154 0.1455 0.2130 REMARK 3 3 4.2125 - 3.6803 0.92 1442 144 0.1467 0.1922 REMARK 3 4 3.6803 - 3.3439 0.97 1509 158 0.1763 0.2322 REMARK 3 5 3.3439 - 3.1043 0.98 1517 150 0.1954 0.2424 REMARK 3 6 3.1043 - 2.9213 0.97 1497 150 0.1921 0.2409 REMARK 3 7 2.9213 - 2.7751 0.89 1360 149 0.1974 0.2798 REMARK 3 8 2.7751 - 2.6543 0.90 1417 132 0.2276 0.2736 REMARK 3 9 2.6543 - 2.5521 0.91 1384 154 0.2140 0.2871 REMARK 3 10 2.5521 - 2.4640 0.89 1380 135 0.2177 0.2734 REMARK 3 11 2.4640 - 2.3870 0.87 1366 134 0.2256 0.2428 REMARK 3 12 2.3870 - 2.3188 0.85 1298 140 0.2268 0.2847 REMARK 3 13 2.3188 - 2.2577 0.79 1228 122 0.2353 0.2690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3874 REMARK 3 ANGLE : 0.811 5243 REMARK 3 CHIRALITY : 0.030 621 REMARK 3 PLANARITY : 0.003 648 REMARK 3 DIHEDRAL : 14.336 1412 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9650 33.8829 -5.0543 REMARK 3 T TENSOR REMARK 3 T11: 0.4677 T22: 0.6027 REMARK 3 T33: 0.6505 T12: 0.1391 REMARK 3 T13: 0.0078 T23: 0.1451 REMARK 3 L TENSOR REMARK 3 L11: 4.8696 L22: 2.1442 REMARK 3 L33: 3.4060 L12: -0.7126 REMARK 3 L13: 1.2908 L23: 0.8479 REMARK 3 S TENSOR REMARK 3 S11: 0.1436 S12: 0.3609 S13: 0.9084 REMARK 3 S21: -0.6030 S22: 0.3181 S23: 0.7059 REMARK 3 S31: -0.3876 S32: -0.8519 S33: -0.0483 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5277 9.2140 -5.9133 REMARK 3 T TENSOR REMARK 3 T11: 0.4089 T22: 0.5302 REMARK 3 T33: 0.4924 T12: -0.0795 REMARK 3 T13: -0.0559 T23: -0.0766 REMARK 3 L TENSOR REMARK 3 L11: 4.4534 L22: 2.3940 REMARK 3 L33: 2.7537 L12: -1.2528 REMARK 3 L13: 1.1797 L23: -0.7392 REMARK 3 S TENSOR REMARK 3 S11: 0.3361 S12: 0.3346 S13: -0.6863 REMARK 3 S21: 0.1655 S22: -0.0690 S23: -0.7889 REMARK 3 S31: 0.4614 S32: 0.0427 S33: -0.1902 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2821 23.0375 2.2589 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.3265 REMARK 3 T33: 0.2402 T12: -0.0085 REMARK 3 T13: -0.0193 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 4.3065 L22: 4.4200 REMARK 3 L33: 3.6920 L12: -0.1335 REMARK 3 L13: -1.1181 L23: 1.4883 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.1211 S13: 0.1052 REMARK 3 S21: 0.1151 S22: 0.0963 S23: -0.3350 REMARK 3 S31: -0.1412 S32: 0.2407 S33: -0.1394 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 396 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8391 3.9219 1.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.5630 T22: 0.3375 REMARK 3 T33: 0.5667 T12: 0.0137 REMARK 3 T13: 0.0786 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 4.4283 L22: 4.9099 REMARK 3 L33: 4.3991 L12: 0.8208 REMARK 3 L13: -2.5701 L23: 1.0885 REMARK 3 S TENSOR REMARK 3 S11: -0.2307 S12: -0.1055 S13: -1.2265 REMARK 3 S21: 0.3895 S22: -0.1742 S23: 0.0003 REMARK 3 S31: 1.0357 S32: 0.4992 S33: 0.2162 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2721 17.1206 5.5137 REMARK 3 T TENSOR REMARK 3 T11: 0.2611 T22: 0.2203 REMARK 3 T33: 0.2247 T12: -0.0030 REMARK 3 T13: 0.0387 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 4.8223 L22: 4.8786 REMARK 3 L33: 2.8112 L12: -0.2050 REMARK 3 L13: -1.0589 L23: 1.1381 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: 0.2038 S13: -0.3283 REMARK 3 S21: 0.3739 S22: -0.0149 S23: 0.2758 REMARK 3 S31: 0.2987 S32: -0.1583 S33: 0.1483 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 474 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8562 21.1759 8.3694 REMARK 3 T TENSOR REMARK 3 T11: 0.3228 T22: 0.2476 REMARK 3 T33: 0.1814 T12: 0.0197 REMARK 3 T13: 0.0322 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.8659 L22: 2.7417 REMARK 3 L33: 1.8281 L12: 0.3379 REMARK 3 L13: -0.3981 L23: 0.5487 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: -0.0808 S13: 0.1086 REMARK 3 S21: 0.1271 S22: -0.1226 S23: -0.1083 REMARK 3 S31: 0.1694 S32: 0.0774 S33: 0.0789 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1815 21.1160 35.5635 REMARK 3 T TENSOR REMARK 3 T11: 0.3001 T22: 0.4604 REMARK 3 T33: 0.3957 T12: 0.0515 REMARK 3 T13: 0.0768 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 3.7625 L22: 2.8445 REMARK 3 L33: 8.6468 L12: 1.6916 REMARK 3 L13: 5.6202 L23: 1.6697 REMARK 3 S TENSOR REMARK 3 S11: 0.3313 S12: -0.2668 S13: -0.6302 REMARK 3 S21: 0.1141 S22: 0.0750 S23: 0.0239 REMARK 3 S31: 0.1367 S32: -0.4387 S33: -0.2778 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 339 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0983 14.0417 31.6329 REMARK 3 T TENSOR REMARK 3 T11: 0.3254 T22: 0.2987 REMARK 3 T33: 0.2446 T12: 0.0183 REMARK 3 T13: 0.0302 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 3.2272 L22: 3.8578 REMARK 3 L33: 4.5813 L12: -0.4947 REMARK 3 L13: -0.2286 L23: 0.7524 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: -0.2150 S13: -0.3609 REMARK 3 S21: 0.0165 S22: 0.0444 S23: 0.0664 REMARK 3 S31: 0.2605 S32: 0.0834 S33: 0.0694 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 394 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3533 32.0374 35.4687 REMARK 3 T TENSOR REMARK 3 T11: 0.5860 T22: 0.4752 REMARK 3 T33: 0.4182 T12: -0.0825 REMARK 3 T13: 0.0333 T23: -0.0786 REMARK 3 L TENSOR REMARK 3 L11: 1.8253 L22: 6.4691 REMARK 3 L33: 5.1080 L12: -0.1642 REMARK 3 L13: -0.1693 L23: -1.9714 REMARK 3 S TENSOR REMARK 3 S11: 0.2506 S12: -0.5438 S13: 0.4995 REMARK 3 S21: 0.0545 S22: 0.0544 S23: -0.8017 REMARK 3 S31: -0.9469 S32: 0.4123 S33: 0.0144 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 422 THROUGH 438 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0756 32.1821 24.4795 REMARK 3 T TENSOR REMARK 3 T11: 0.5765 T22: 0.2888 REMARK 3 T33: 0.3842 T12: -0.0771 REMARK 3 T13: 0.0181 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 7.7597 L22: 5.7748 REMARK 3 L33: 5.9227 L12: -0.7072 REMARK 3 L13: 2.0286 L23: -0.1273 REMARK 3 S TENSOR REMARK 3 S11: -0.4325 S12: 0.4576 S13: 0.9072 REMARK 3 S21: 0.2053 S22: -0.0653 S23: -0.5899 REMARK 3 S31: -1.2073 S32: 0.4180 S33: 0.1350 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 439 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2954 17.3733 21.3573 REMARK 3 T TENSOR REMARK 3 T11: 0.3827 T22: 0.4168 REMARK 3 T33: 0.2343 T12: 0.0188 REMARK 3 T13: 0.0160 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.0227 L22: 5.1087 REMARK 3 L33: 4.3047 L12: 0.0989 REMARK 3 L13: 0.3174 L23: 0.1135 REMARK 3 S TENSOR REMARK 3 S11: 0.2620 S12: 0.2203 S13: 0.0052 REMARK 3 S21: -0.4971 S22: -0.4435 S23: -0.1052 REMARK 3 S31: 0.3562 S32: -0.2836 S33: 0.0299 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 471 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2795 21.5476 18.2738 REMARK 3 T TENSOR REMARK 3 T11: 0.3101 T22: 0.3181 REMARK 3 T33: 0.2574 T12: -0.0386 REMARK 3 T13: 0.0686 T23: -0.0538 REMARK 3 L TENSOR REMARK 3 L11: 3.1736 L22: 2.3061 REMARK 3 L33: 5.1055 L12: -0.6686 REMARK 3 L13: 0.8818 L23: -0.8119 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: 0.0310 S13: -0.0622 REMARK 3 S21: -0.1312 S22: -0.0104 S23: 0.1332 REMARK 3 S31: 0.1080 S32: -0.4245 S33: 0.0428 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 531 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4530 9.7420 33.7599 REMARK 3 T TENSOR REMARK 3 T11: 0.7254 T22: 0.4491 REMARK 3 T33: 0.8231 T12: 0.1494 REMARK 3 T13: -0.0168 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 5.4568 L22: 3.9901 REMARK 3 L33: 7.2243 L12: -0.0422 REMARK 3 L13: -0.5707 L23: -1.2131 REMARK 3 S TENSOR REMARK 3 S11: 0.8271 S12: -0.0253 S13: -0.2197 REMARK 3 S21: 0.0456 S22: -0.2963 S23: -1.1243 REMARK 3 S31: 1.1656 S32: 0.7040 S33: -0.0386 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 687 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9921 33.4914 1.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.3359 T22: 0.4571 REMARK 3 T33: 0.6421 T12: -0.0625 REMARK 3 T13: 0.0402 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 7.7925 L22: 1.2861 REMARK 3 L33: 6.9706 L12: -0.3386 REMARK 3 L13: -4.4573 L23: 2.5522 REMARK 3 S TENSOR REMARK 3 S11: 0.1588 S12: -0.8663 S13: 0.3114 REMARK 3 S21: -0.3994 S22: 0.2620 S23: -0.6044 REMARK 3 S31: -1.1692 S32: 0.3420 S33: -0.4251 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 688 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2002 1.6730 35.2588 REMARK 3 T TENSOR REMARK 3 T11: 0.8190 T22: 0.5018 REMARK 3 T33: 0.6331 T12: -0.0173 REMARK 3 T13: -0.0240 T23: 0.1875 REMARK 3 L TENSOR REMARK 3 L11: 2.8173 L22: 7.1754 REMARK 3 L33: 7.1849 L12: 2.6760 REMARK 3 L13: 0.9905 L23: 0.3335 REMARK 3 S TENSOR REMARK 3 S11: -0.9600 S12: -1.1490 S13: -2.3871 REMARK 3 S21: -0.2300 S22: 0.1888 S23: -0.7295 REMARK 3 S31: 1.6971 S32: -0.4731 S33: 0.5203 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21482 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.90700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2B1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.52200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 ASP A 332 REMARK 465 PRO A 333 REMARK 465 THR A 460 REMARK 465 PHE A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 LYS A 472 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 CYS B 417 REMARK 465 VAL B 418 REMARK 465 GLU B 419 REMARK 465 GLY B 420 REMARK 465 PHE B 461 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LEU B 549 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 HIS D 687 REMARK 465 SER D 697 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 334 OG1 CG2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 ARG A 477 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 533 CG1 CG2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 PHE B 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 ARG B 412 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 413 CG OD1 ND2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 LYS B 467 CG CD CE NZ REMARK 470 LEU B 469 CG CD1 CD2 REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 GLU B 471 CG CD OE1 OE2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 LYS B 492 CG CD CE NZ REMARK 470 GLU B 523 CG CD OE1 OE2 REMARK 470 LYS B 529 CG CD CE NZ REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ASN B 532 CG OD1 ND2 REMARK 470 VAL B 533 CG1 CG2 REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 687 CG ND1 CD2 CE1 NE2 REMARK 470 ASP D 696 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1026 O HOH B 1055 1.88 REMARK 500 O ASP B 480 O HOH B 1001 1.92 REMARK 500 O LYS A 362 O HOH A 1001 1.97 REMARK 500 O HOH A 1058 O HOH B 1054 1.98 REMARK 500 OE1 GLU A 385 O HOH A 1002 2.04 REMARK 500 OE1 GLU A 330 O HOH A 1003 2.04 REMARK 500 OG SER A 305 O HOH A 1004 2.05 REMARK 500 OD1 ASP B 351 O HOH B 1002 2.08 REMARK 500 OG SER A 456 O HOH A 1005 2.08 REMARK 500 O HOH A 1004 O HOH A 1038 2.10 REMARK 500 OE1 GLU A 542 O HOH A 1006 2.13 REMARK 500 OD1 ASP A 480 O HOH A 1007 2.16 REMARK 500 O GLY A 400 O HOH A 1008 2.17 REMARK 500 OD2 ASP B 538 O HOH B 1003 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 337 -39.65 -140.51 REMARK 500 CYS A 417 -168.67 -71.28 REMARK 500 VAL A 418 107.41 34.83 REMARK 500 PHE B 337 -113.75 -105.79 REMARK 500 SER B 338 158.53 76.86 REMARK 500 LEU B 469 96.48 149.38 REMARK 500 GLU B 470 -84.92 64.30 REMARK 500 ASN B 532 72.17 29.85 REMARK 500 GLN C 695 -132.34 -99.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5K2 A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5K2 B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DXS RELATED DB: PDB REMARK 900 5DXS CONTAINS THE SAME PROTEIN IN COMPLEX WITH A DIFFERENT REMARK 900 CYCLOFENIL DERIVATIVE REMARK 900 RELATED ID: 5DXR RELATED DB: PDB REMARK 900 5DXR CONTAINS THE SAME PROTEIN IN COMPLEX WITH A DIFFERENT REMARK 900 CYCLOFENIL DERIVATIVE DBREF 5DYB A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DYB B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DYB C 686 699 UNP Q15596 NCOA2_HUMAN 686 699 DBREF 5DYB D 686 699 UNP Q15596 NCOA2_HUMAN 686 699 SEQADV 5DYB SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5DYB SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 5K2 A 900 25 HET 5K2 B 901 25 HETNAM 5K2 4,4'-(3,4-DIHYDRONAPHTHALEN-2(1H)-YLIDENEMETHANEDIYL) HETNAM 2 5K2 DIPHENOL FORMUL 5 5K2 2(C23 H20 O2) FORMUL 7 HOH *121(H2 O) HELIX 1 AA1 SER A 305 LEU A 310 1 6 HELIX 2 AA2 THR A 311 GLU A 323 1 13 HELIX 3 AA3 SER A 338 LYS A 362 1 25 HELIX 4 AA4 THR A 371 SER A 395 1 25 HELIX 5 AA5 ARG A 412 LYS A 416 1 5 HELIX 6 AA6 MET A 421 MET A 438 1 18 HELIX 7 AA7 GLN A 441 SER A 456 1 16 HELIX 8 AA8 HIS A 474 ALA A 493 1 20 HELIX 9 AA9 THR A 496 ASN A 532 1 37 HELIX 10 AB1 SER A 537 ALA A 546 1 10 HELIX 11 AB2 LEU B 306 LEU B 310 1 5 HELIX 12 AB3 THR B 311 ALA B 322 1 12 HELIX 13 AB4 PHE B 337 LYS B 362 1 26 HELIX 14 AB5 GLY B 366 LEU B 370 5 5 HELIX 15 AB6 THR B 371 ARG B 394 1 24 HELIX 16 AB7 VAL B 422 ASN B 439 1 18 HELIX 17 AB8 GLN B 441 SER B 456 1 16 HELIX 18 AB9 GLU B 470 ALA B 493 1 24 HELIX 19 AC1 THR B 496 LYS B 531 1 36 HELIX 20 AC2 SER B 537 ARG B 548 1 12 HELIX 21 AC3 LYS C 688 LEU C 694 1 7 HELIX 22 AC4 ILE D 689 ASP D 696 1 8 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LYS B 401 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 CISPEP 1 LEU B 469 GLU B 470 0 6.64 SITE 1 AC1 12 MET A 343 LEU A 346 THR A 347 ALA A 350 SITE 2 AC1 12 GLU A 353 LEU A 387 ARG A 394 MET A 421 SITE 3 AC1 12 ILE A 424 LEU A 428 LEU A 525 LEU A 540 SITE 1 AC2 12 LEU B 346 THR B 347 ALA B 350 GLU B 353 SITE 2 AC2 12 LEU B 387 ARG B 394 PHE B 404 MET B 421 SITE 3 AC2 12 ILE B 424 PHE B 425 LEU B 428 LEU B 540 CRYST1 54.154 81.044 58.100 90.00 110.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018466 0.000000 0.006779 0.00000 SCALE2 0.000000 0.012339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018335 0.00000