HEADER HYDROLASE 25-SEP-15 5DYT TITLE CRYSTAL STRUCTURE OF HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH N- TITLE 2 ((1-BENZYLPIPERIDIN-3-YL)METHYL)-N-METHYLNAPHTHALENE-2-SULFONAMIDE CAVEAT 5DYT NAG D 2 HAS WRONG CHIRALITY AT ATOM C1 NAG E 1 HAS WRONG CAVEAT 2 5DYT CHIRALITY AT ATOM C1 NAG E 2 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 3 5DYT FUC E 3 HAS WRONG CHIRALITY AT ATOM C1 NAG G 2 HAS WRONG CAVEAT 4 5DYT CHIRALITY AT ATOM C1 FUC G 3 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 5 5DYT FUC I 2 HAS WRONG CHIRALITY AT ATOM C1 NAG A 610 HAS WRONG CAVEAT 6 5DYT CHIRALITY AT ATOM C1 NAG B 611 HAS WRONG CHIRALITY AT ATOM CAVEAT 7 5DYT C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RSIDUES 28-557; COMPND 5 SYNONYM: ACYLCHOLINE ACYLHYDROLASE,BUTYRYLCHOLINE ESTERASE,CHOLINE COMPND 6 ESTERASE II,PSEUDOCHOLINESTERASE; COMPND 7 EC: 3.1.1.8; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCHE, CHE1; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS HUMAN BUTYRYLCHOLINESTERASE, AD, ALZHEIMER DISEASE, SULFONAMIDE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.COQUELLE,B.BRUS,J.P.COLLETIER REVDAT 4 01-MAY-24 5DYT 1 HETSYN LINK REVDAT 3 29-JUL-20 5DYT 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 18-JAN-17 5DYT 1 JRNL REVDAT 1 05-OCT-16 5DYT 0 JRNL AUTH U.KOSAK,B.BRUS,D.KNEZ,R.SINK,S.ZAKELJ,J.TRONTELJ,A.PISLAR, JRNL AUTH 2 J.SLENC,M.GOBEC,M.ZIVIN,L.TRATNJEK,M.PERSE,K.SAAT,A.PODKOWA, JRNL AUTH 3 B.FILIPEK,F.NACHON,X.BRAZZOLOTTO,A.WIECKOWSKA,B.MALAWSKA, JRNL AUTH 4 J.STOJAN,I.M.RASCAN,J.KOS,N.COQUELLE,J.P.COLLETIER,S.GOBEC JRNL TITL DEVELOPMENT OF AN IN-VIVO ACTIVE REVERSIBLE JRNL TITL 2 BUTYRYLCHOLINESTERASE INHIBITOR. JRNL REF SCI REP V. 6 39495 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 28000737 JRNL DOI 10.1038/SREP39495 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 47137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1278 - 5.4912 0.99 4793 146 0.1739 0.2230 REMARK 3 2 5.4912 - 4.3596 1.00 4657 150 0.1460 0.1856 REMARK 3 3 4.3596 - 3.8088 1.00 4576 138 0.1449 0.1962 REMARK 3 4 3.8088 - 3.4607 1.00 4571 140 0.1767 0.2328 REMARK 3 5 3.4607 - 3.2127 0.99 4522 143 0.1959 0.2637 REMARK 3 6 3.2127 - 3.0234 0.99 4539 145 0.2086 0.2575 REMARK 3 7 3.0234 - 2.8720 1.00 4520 135 0.2249 0.2892 REMARK 3 8 2.8720 - 2.7470 1.00 4519 135 0.2331 0.3402 REMARK 3 9 2.7470 - 2.6412 1.00 4501 136 0.2367 0.3010 REMARK 3 10 2.6412 - 2.5501 1.00 4525 146 0.2572 0.3065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9100 REMARK 3 ANGLE : 1.000 12318 REMARK 3 CHIRALITY : 0.056 1354 REMARK 3 PLANARITY : 0.006 1540 REMARK 3 DIHEDRAL : 20.644 3333 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000214050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93903 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08070 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73190 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1POM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 12% REMARK 280 POLYETHYLENE GLYCOL 4000., PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.23500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.64000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 115.64000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 0 REMARK 465 GLU A 1 REMARK 465 ASP A 2 REMARK 465 THR B 0 REMARK 465 GLU B 1 REMARK 465 ASP B 2 REMARK 465 ASP B 3 REMARK 465 GLN B 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 380 CG CD OE1 NE2 REMARK 470 ARG A 453 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 506 CD OE1 OE2 REMARK 470 SER B 53 CB OG REMARK 470 LYS B 248 CG CD CE NZ REMARK 470 ASN B 485 CB CG OD1 ND2 REMARK 470 ASN B 486 CG OD1 ND2 REMARK 470 GLU B 506 CG CD OE1 OE2 REMARK 470 SER B 507 CB OG REMARK 470 ARG B 509 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 621 UNK UNX A 623 1.26 REMARK 500 UNK UNX B 618 UNK UNX B 620 1.36 REMARK 500 UNK UNX A 622 UNK UNX A 623 1.54 REMARK 500 O6 NAG H 1 C1 FUL B 606 1.55 REMARK 500 ND2 ASN B 57 O5 NAG B 602 1.85 REMARK 500 UNK UNX B 619 UNK UNX B 620 2.00 REMARK 500 UNK UNX A 621 UNK UNX A 622 2.02 REMARK 500 ND2 ASN A 57 O5 NAG C 1 2.03 REMARK 500 ND2 ASN A 17 O5 NAG A 601 2.04 REMARK 500 O HOH B 778 O HOH B 811 2.05 REMARK 500 O PHE B 217 NZ LYS B 313 2.06 REMARK 500 O4 NAG F 1 O5 NAG F 2 2.06 REMARK 500 O6 NAG C 1 O5 FUC C 3 2.07 REMARK 500 ND2 ASN A 241 O5 NAG E 1 2.11 REMARK 500 ND2 ASN B 241 O5 NAG H 1 2.12 REMARK 500 O HOH A 772 O HOH A 800 2.13 REMARK 500 O4 NAG C 1 C2 NAG C 2 2.14 REMARK 500 CG ASN B 106 O5 NAG B 603 2.15 REMARK 500 O HOH B 804 O HOH B 812 2.15 REMARK 500 O6 NAG B 608 O HOH B 701 2.16 REMARK 500 O4 NAG G 1 O5 NAG G 2 2.16 REMARK 500 O6 NAG H 1 C2 FUL B 606 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 237 O ARG B 453 1545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 -111.76 -89.77 REMARK 500 ASP A 54 -170.81 -64.72 REMARK 500 GLN A 67 142.97 -171.89 REMARK 500 ASN A 106 47.81 -160.96 REMARK 500 PHE A 118 12.45 56.90 REMARK 500 ALA A 162 72.24 -159.19 REMARK 500 SER A 198 -124.11 64.33 REMARK 500 ASP A 297 -71.79 -135.24 REMARK 500 ASP A 375 68.80 -68.58 REMARK 500 GLN A 380 110.46 -170.16 REMARK 500 ARG A 381 70.92 49.46 REMARK 500 PHE A 398 -55.84 -124.30 REMARK 500 ARG A 453 6.15 -67.80 REMARK 500 GLU A 482 -73.78 -102.37 REMARK 500 LYS B 9 -8.09 -59.90 REMARK 500 PHE B 43 -1.95 79.92 REMARK 500 ASP B 54 -162.86 -62.01 REMARK 500 SER B 89 144.13 -177.09 REMARK 500 ASN B 106 54.72 -158.28 REMARK 500 PHE B 118 -1.00 62.34 REMARK 500 PRO B 160 -7.06 -59.71 REMARK 500 ALA B 162 74.03 -155.83 REMARK 500 SER B 198 -120.22 65.18 REMARK 500 THR B 218 -62.21 -108.32 REMARK 500 TYR B 282 72.36 -119.81 REMARK 500 PRO B 285 -8.84 -59.81 REMARK 500 ASP B 297 -73.37 -142.45 REMARK 500 ASP B 379 22.76 -75.72 REMARK 500 PHE B 398 -66.18 -131.30 REMARK 500 ASN B 455 33.66 -71.99 REMARK 500 GLU B 506 -83.48 -61.01 REMARK 500 PHE B 525 -52.38 -126.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 155 LEU A 156 149.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FUL B 606 DBREF 5DYT A 0 529 UNP P06276 CHLE_HUMAN 28 557 DBREF 5DYT B 0 529 UNP P06276 CHLE_HUMAN 28 557 SEQRES 1 A 530 THR GLU ASP ASP ILE ILE ILE ALA THR LYS ASN GLY LYS SEQRES 2 A 530 VAL ARG GLY MET ASN LEU THR VAL PHE GLY GLY THR VAL SEQRES 3 A 530 THR ALA PHE LEU GLY ILE PRO TYR ALA GLN PRO PRO LEU SEQRES 4 A 530 GLY ARG LEU ARG PHE LYS LYS PRO GLN SER LEU THR LYS SEQRES 5 A 530 TRP SER ASP ILE TRP ASN ALA THR LYS TYR ALA ASN SER SEQRES 6 A 530 CYS CSO GLN ASN ILE ASP GLN SER PHE PRO GLY PHE HIS SEQRES 7 A 530 GLY SER GLU MET TRP ASN PRO ASN THR ASP LEU SER GLU SEQRES 8 A 530 ASP CYS LEU TYR LEU ASN VAL TRP ILE PRO ALA PRO LYS SEQRES 9 A 530 PRO LYS ASN ALA THR VAL LEU ILE TRP ILE TYR GLY GLY SEQRES 10 A 530 GLY PHE GLN THR GLY THR SER SER LEU HIS VAL TYR ASP SEQRES 11 A 530 GLY LYS PHE LEU ALA ARG VAL GLU ARG VAL ILE VAL VAL SEQRES 12 A 530 SER MET ASN TYR ARG VAL GLY ALA LEU GLY PHE LEU ALA SEQRES 13 A 530 LEU PRO GLY ASN PRO GLU ALA PRO GLY ASN MET GLY LEU SEQRES 14 A 530 PHE ASP GLN GLN LEU ALA LEU GLN TRP VAL GLN LYS ASN SEQRES 15 A 530 ILE ALA ALA PHE GLY GLY ASN PRO LYS SER VAL THR LEU SEQRES 16 A 530 PHE GLY GLU SER ALA GLY ALA ALA SER VAL SER LEU HIS SEQRES 17 A 530 LEU LEU SER PRO GLY SER HIS SER LEU PHE THR ARG ALA SEQRES 18 A 530 ILE LEU GLN SER GLY SER PHE ASN ALA PRO TRP ALA VAL SEQRES 19 A 530 THR SER LEU TYR GLU ALA ARG ASN ARG THR LEU ASN LEU SEQRES 20 A 530 ALA LYS LEU THR GLY CYS SER ARG GLU ASN GLU THR GLU SEQRES 21 A 530 ILE ILE LYS CYS LEU ARG ASN LYS ASP PRO GLN GLU ILE SEQRES 22 A 530 LEU LEU ASN GLU ALA PHE VAL VAL PRO TYR GLY THR PRO SEQRES 23 A 530 LEU SER VAL ASN PHE GLY PRO THR VAL ASP GLY ASP PHE SEQRES 24 A 530 LEU THR ASP MET PRO ASP ILE LEU LEU GLU LEU GLY GLN SEQRES 25 A 530 PHE LYS LYS THR GLN ILE LEU VAL GLY VAL ASN LYS ASP SEQRES 26 A 530 GLU GLY THR ALA PHE LEU VAL TYR GLY ALA PRO GLY PHE SEQRES 27 A 530 SER LYS ASP ASN ASN SER ILE ILE THR ARG LYS GLU PHE SEQRES 28 A 530 GLN GLU GLY LEU LYS ILE PHE PHE PRO GLY VAL SER GLU SEQRES 29 A 530 PHE GLY LYS GLU SER ILE LEU PHE HIS TYR THR ASP TRP SEQRES 30 A 530 VAL ASP ASP GLN ARG PRO GLU ASN TYR ARG GLU ALA LEU SEQRES 31 A 530 GLY ASP VAL VAL GLY ASP TYR ASN PHE ILE CYS PRO ALA SEQRES 32 A 530 LEU GLU PHE THR LYS LYS PHE SER GLU TRP GLY ASN ASN SEQRES 33 A 530 ALA PHE PHE TYR TYR PHE GLU HIS ARG SER SER LYS LEU SEQRES 34 A 530 PRO TRP PRO GLU TRP MET GLY VAL MET HIS GLY TYR GLU SEQRES 35 A 530 ILE GLU PHE VAL PHE GLY LEU PRO LEU GLU ARG ARG ASP SEQRES 36 A 530 ASN TYR THR LYS ALA GLU GLU ILE LEU SER ARG SER ILE SEQRES 37 A 530 VAL LYS ARG TRP ALA ASN PHE ALA LYS TYR GLY ASN PRO SEQRES 38 A 530 ASN GLU THR GLN ASN ASN SER THR SER TRP PRO VAL PHE SEQRES 39 A 530 LYS SER THR GLU GLN LYS TYR LEU THR LEU ASN THR GLU SEQRES 40 A 530 SER THR ARG ILE MET THR LYS LEU ARG ALA GLN GLN CYS SEQRES 41 A 530 ARG PHE TRP THR SER PHE PHE PRO LYS VAL SEQRES 1 B 530 THR GLU ASP ASP ILE ILE ILE ALA THR LYS ASN GLY LYS SEQRES 2 B 530 VAL ARG GLY MET ASN LEU THR VAL PHE GLY GLY THR VAL SEQRES 3 B 530 THR ALA PHE LEU GLY ILE PRO TYR ALA GLN PRO PRO LEU SEQRES 4 B 530 GLY ARG LEU ARG PHE LYS LYS PRO GLN SER LEU THR LYS SEQRES 5 B 530 TRP SER ASP ILE TRP ASN ALA THR LYS TYR ALA ASN SER SEQRES 6 B 530 CYS CSO GLN ASN ILE ASP GLN SER PHE PRO GLY PHE HIS SEQRES 7 B 530 GLY SER GLU MET TRP ASN PRO ASN THR ASP LEU SER GLU SEQRES 8 B 530 ASP CYS LEU TYR LEU ASN VAL TRP ILE PRO ALA PRO LYS SEQRES 9 B 530 PRO LYS ASN ALA THR VAL LEU ILE TRP ILE TYR GLY GLY SEQRES 10 B 530 GLY PHE GLN THR GLY THR SER SER LEU HIS VAL TYR ASP SEQRES 11 B 530 GLY LYS PHE LEU ALA ARG VAL GLU ARG VAL ILE VAL VAL SEQRES 12 B 530 SER MET ASN TYR ARG VAL GLY ALA LEU GLY PHE LEU ALA SEQRES 13 B 530 LEU PRO GLY ASN PRO GLU ALA PRO GLY ASN MET GLY LEU SEQRES 14 B 530 PHE ASP GLN GLN LEU ALA LEU GLN TRP VAL GLN LYS ASN SEQRES 15 B 530 ILE ALA ALA PHE GLY GLY ASN PRO LYS SER VAL THR LEU SEQRES 16 B 530 PHE GLY GLU SER ALA GLY ALA ALA SER VAL SER LEU HIS SEQRES 17 B 530 LEU LEU SER PRO GLY SER HIS SER LEU PHE THR ARG ALA SEQRES 18 B 530 ILE LEU GLN SER GLY SER PHE ASN ALA PRO TRP ALA VAL SEQRES 19 B 530 THR SER LEU TYR GLU ALA ARG ASN ARG THR LEU ASN LEU SEQRES 20 B 530 ALA LYS LEU THR GLY CYS SER ARG GLU ASN GLU THR GLU SEQRES 21 B 530 ILE ILE LYS CYS LEU ARG ASN LYS ASP PRO GLN GLU ILE SEQRES 22 B 530 LEU LEU ASN GLU ALA PHE VAL VAL PRO TYR GLY THR PRO SEQRES 23 B 530 LEU SER VAL ASN PHE GLY PRO THR VAL ASP GLY ASP PHE SEQRES 24 B 530 LEU THR ASP MET PRO ASP ILE LEU LEU GLU LEU GLY GLN SEQRES 25 B 530 PHE LYS LYS THR GLN ILE LEU VAL GLY VAL ASN LYS ASP SEQRES 26 B 530 GLU GLY THR ALA PHE LEU VAL TYR GLY ALA PRO GLY PHE SEQRES 27 B 530 SER LYS ASP ASN ASN SER ILE ILE THR ARG LYS GLU PHE SEQRES 28 B 530 GLN GLU GLY LEU LYS ILE PHE PHE PRO GLY VAL SER GLU SEQRES 29 B 530 PHE GLY LYS GLU SER ILE LEU PHE HIS TYR THR ASP TRP SEQRES 30 B 530 VAL ASP ASP GLN ARG PRO GLU ASN TYR ARG GLU ALA LEU SEQRES 31 B 530 GLY ASP VAL VAL GLY ASP TYR ASN PHE ILE CYS PRO ALA SEQRES 32 B 530 LEU GLU PHE THR LYS LYS PHE SER GLU TRP GLY ASN ASN SEQRES 33 B 530 ALA PHE PHE TYR TYR PHE GLU HIS ARG SER SER LYS LEU SEQRES 34 B 530 PRO TRP PRO GLU TRP MET GLY VAL MET HIS GLY TYR GLU SEQRES 35 B 530 ILE GLU PHE VAL PHE GLY LEU PRO LEU GLU ARG ARG ASP SEQRES 36 B 530 ASN TYR THR LYS ALA GLU GLU ILE LEU SER ARG SER ILE SEQRES 37 B 530 VAL LYS ARG TRP ALA ASN PHE ALA LYS TYR GLY ASN PRO SEQRES 38 B 530 ASN GLU THR GLN ASN ASN SER THR SER TRP PRO VAL PHE SEQRES 39 B 530 LYS SER THR GLU GLN LYS TYR LEU THR LEU ASN THR GLU SEQRES 40 B 530 SER THR ARG ILE MET THR LYS LEU ARG ALA GLN GLN CYS SEQRES 41 B 530 ARG PHE TRP THR SER PHE PHE PRO LYS VAL MODRES 5DYT CSO A 66 CYS MODIFIED RESIDUE MODRES 5DYT CSO B 66 CYS MODIFIED RESIDUE HET CSO A 66 7 HET CSO B 66 7 HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET FUC G 3 10 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET FUC I 2 10 HET NAG A 601 14 HET NAG A 610 14 HET 5HB A 616 29 HET GOL A 617 6 HET GOL A 618 6 HET GOL A 619 6 HET EDO A 620 4 HET UNX A 621 1 HET UNX A 622 1 HET UNX A 623 1 HET NAG B 601 14 HET NAG B 602 14 HET NAG B 603 14 HET FUL B 606 10 HET NAG B 607 14 HET NAG B 608 14 HET NAG B 611 14 HET 5HB B 612 29 HET GOL B 613 6 HET GOL B 614 6 HET EDO B 615 4 HET EDO B 616 4 HET EDO B 617 4 HET UNX B 618 1 HET UNX B 619 1 HET UNX B 620 1 HET PEG B 621 7 HETNAM CSO S-HYDROXYCYSTEINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM 5HB N-{[(3R)-1-BENZYLPIPERIDIN-3-YL]METHYL}-N- HETNAM 2 5HB METHYLNAPHTHALENE-2-SULFONAMIDE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 NAG 21(C8 H15 N O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 12 5HB 2(C24 H28 N2 O2 S) FORMUL 13 GOL 5(C3 H8 O3) FORMUL 16 EDO 4(C2 H6 O2) FORMUL 17 UNX 6(X) FORMUL 23 FUL C6 H12 O5 FORMUL 36 PEG C4 H10 O3 FORMUL 37 HOH *232(H2 O) HELIX 1 AA1 LEU A 38 ARG A 42 5 5 HELIX 2 AA2 PHE A 76 MET A 81 1 6 HELIX 3 AA3 LEU A 125 ASP A 129 5 5 HELIX 4 AA4 GLY A 130 ARG A 138 1 9 HELIX 5 AA5 VAL A 148 LEU A 154 1 7 HELIX 6 AA6 ASN A 165 ILE A 182 1 18 HELIX 7 AA7 ALA A 183 PHE A 185 5 3 HELIX 8 AA8 SER A 198 SER A 210 1 13 HELIX 9 AA9 PRO A 211 PHE A 217 5 7 HELIX 10 AB1 SER A 235 THR A 250 1 16 HELIX 11 AB2 ASN A 256 LYS A 267 1 12 HELIX 12 AB3 ASP A 268 LEU A 274 1 7 HELIX 13 AB4 ASN A 275 VAL A 280 5 6 HELIX 14 AB5 MET A 302 LEU A 309 1 8 HELIX 15 AB6 GLY A 326 VAL A 331 1 6 HELIX 16 AB7 THR A 346 PHE A 358 1 13 HELIX 17 AB8 SER A 362 TYR A 373 1 12 HELIX 18 AB9 GLU A 383 PHE A 398 1 16 HELIX 19 AC1 PHE A 398 GLU A 411 1 14 HELIX 20 AC2 PRO A 431 GLY A 435 5 5 HELIX 21 AC3 GLU A 441 PHE A 446 1 6 HELIX 22 AC4 GLY A 447 ASN A 455 5 9 HELIX 23 AC5 THR A 457 GLY A 478 1 22 HELIX 24 AC6 ARG A 515 PHE A 525 1 11 HELIX 25 AC7 PHE A 526 VAL A 529 5 4 HELIX 26 AC8 LEU B 38 ARG B 42 5 5 HELIX 27 AC9 PHE B 76 MET B 81 1 6 HELIX 28 AD1 LEU B 125 ASP B 129 5 5 HELIX 29 AD2 GLY B 130 ARG B 138 1 9 HELIX 30 AD3 GLY B 149 LEU B 154 1 6 HELIX 31 AD4 ASN B 165 ILE B 182 1 18 HELIX 32 AD5 ALA B 183 PHE B 185 5 3 HELIX 33 AD6 SER B 198 SER B 210 1 13 HELIX 34 AD7 PRO B 211 PHE B 217 5 7 HELIX 35 AD8 SER B 235 THR B 250 1 16 HELIX 36 AD9 ASN B 256 ARG B 265 1 10 HELIX 37 AE1 ASP B 268 LEU B 274 1 7 HELIX 38 AE2 ASN B 275 VAL B 279 5 5 HELIX 39 AE3 MET B 302 LEU B 309 1 8 HELIX 40 AE4 GLY B 326 VAL B 331 1 6 HELIX 41 AE5 THR B 346 PHE B 358 1 13 HELIX 42 AE6 SER B 362 TYR B 373 1 12 HELIX 43 AE7 GLU B 383 PHE B 398 1 16 HELIX 44 AE8 PHE B 398 GLU B 411 1 14 HELIX 45 AE9 PRO B 431 GLY B 435 5 5 HELIX 46 AF1 GLU B 441 PHE B 446 1 6 HELIX 47 AF2 GLY B 447 GLU B 451 5 5 HELIX 48 AF3 THR B 457 GLY B 478 1 22 HELIX 49 AF4 ARG B 515 PHE B 525 1 11 HELIX 50 AF5 PHE B 526 VAL B 529 5 4 SHEET 1 AA1 3 ILE A 5 THR A 8 0 SHEET 2 AA1 3 GLY A 11 ARG A 14 -1 O VAL A 13 N ILE A 6 SHEET 3 AA1 3 ILE A 55 ASN A 57 1 O TRP A 56 N ARG A 14 SHEET 1 AA211 MET A 16 VAL A 20 0 SHEET 2 AA211 GLY A 23 PRO A 32 -1 O ALA A 27 N MET A 16 SHEET 3 AA211 TYR A 94 PRO A 100 -1 O LEU A 95 N ILE A 31 SHEET 4 AA211 ILE A 140 MET A 144 -1 O SER A 143 N ASN A 96 SHEET 5 AA211 ALA A 107 ILE A 113 1 N LEU A 110 O ILE A 140 SHEET 6 AA211 GLY A 187 GLU A 197 1 O ASN A 188 N ALA A 107 SHEET 7 AA211 ARG A 219 GLN A 223 1 O ARG A 219 N LEU A 194 SHEET 8 AA211 ILE A 317 ASN A 322 1 O LEU A 318 N LEU A 222 SHEET 9 AA211 ALA A 416 PHE A 421 1 O PHE A 417 N VAL A 319 SHEET 10 AA211 LYS A 499 LEU A 503 1 O LEU A 503 N TYR A 420 SHEET 11 AA211 ILE A 510 THR A 512 -1 O MET A 511 N TYR A 500 SHEET 1 AA3 3 ILE B 5 THR B 8 0 SHEET 2 AA3 3 GLY B 11 ARG B 14 -1 O GLY B 11 N THR B 8 SHEET 3 AA3 3 ILE B 55 ASN B 57 1 O TRP B 56 N ARG B 14 SHEET 1 AA411 MET B 16 VAL B 20 0 SHEET 2 AA411 GLY B 23 PRO B 32 -1 O VAL B 25 N LEU B 18 SHEET 3 AA411 TYR B 94 PRO B 100 -1 O VAL B 97 N PHE B 28 SHEET 4 AA411 ILE B 140 MET B 144 -1 O SER B 143 N ASN B 96 SHEET 5 AA411 ALA B 107 ILE B 113 1 N TRP B 112 O VAL B 142 SHEET 6 AA411 GLY B 187 GLU B 197 1 O PHE B 195 N ILE B 111 SHEET 7 AA411 ARG B 219 GLN B 223 1 O ILE B 221 N LEU B 194 SHEET 8 AA411 ILE B 317 ASN B 322 1 O LEU B 318 N LEU B 222 SHEET 9 AA411 ALA B 416 PHE B 421 1 O PHE B 417 N VAL B 319 SHEET 10 AA411 LYS B 499 LEU B 503 1 O LEU B 501 N PHE B 418 SHEET 11 AA411 ILE B 510 THR B 512 -1 O MET B 511 N TYR B 500 SSBOND 1 CYS A 65 CYS A 92 1555 1555 2.05 SSBOND 2 CYS A 252 CYS A 263 1555 1555 2.05 SSBOND 3 CYS A 400 CYS A 519 1555 1555 2.05 SSBOND 4 CYS B 65 CYS B 92 1555 1555 2.05 SSBOND 5 CYS B 252 CYS B 263 1555 1555 2.05 SSBOND 6 CYS B 400 CYS B 519 1555 1555 2.05 LINK ND2 ASN A 17 C1 NAG A 601 1555 1555 1.52 LINK ND2 ASN A 57 C1 NAG C 1 1555 1555 1.45 LINK C CYS A 65 N CSO A 66 1555 1555 1.33 LINK C CSO A 66 N GLN A 67 1555 1555 1.32 LINK ND2 ASN A 106 C1 NAG D 1 1555 1555 1.40 LINK ND2 ASN A 241 C1 NAG E 1 1555 1555 1.48 LINK ND2 ASN A 341 C1 NAG A 610 1555 1555 1.50 LINK ND2 ASN A 481 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN A 486 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN B 17 C1 NAG B 601 1555 1555 1.47 LINK ND2 ASN B 57 C1 NAG B 602 1555 1555 1.47 LINK C CYS B 65 N CSO B 66 1555 1555 1.33 LINK C CSO B 66 N GLN B 67 1555 1555 1.33 LINK ND2 ASN B 106 C1 NAG B 603 1555 1555 1.52 LINK ND2 ASN B 106 O5 NAG B 603 1555 1555 1.31 LINK ND2 ASN B 241 C1 NAG H 1 1555 1555 1.49 LINK ND2 ASN B 256 C1 NAG B 607 1555 1555 1.45 LINK ND2 ASN B 341 C1 NAG B 608 1555 1555 1.51 LINK ND2 ASN B 455 C1 NAG I 1 1555 1555 1.46 LINK ND2 ASN B 481 C1 NAG B 611 1555 1555 1.48 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.39 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.54 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.50 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.50 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.41 LINK O6 NAG G 1 C1 FUC G 3 1555 1555 1.46 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.49 LINK O6 NAG I 1 C1 FUC I 2 1555 1555 1.48 CISPEP 1 ALA A 101 PRO A 102 0 1.90 CISPEP 2 GLN A 380 ARG A 381 0 -0.04 CISPEP 3 ALA B 101 PRO B 102 0 2.03 CRYST1 76.470 80.230 231.280 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004324 0.00000