HEADER CELL ADHESION 25-SEP-15 5DZ8 TITLE STREPTOCOCCUS AGALACTIAE AGI/II POLYPEPTIDE BSPA VARIABLE (V) DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BSPA (BSPA_V); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: VARIABLE (V) DOMAIN, UNP RESIDUES 285-452; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE SEROTYPE III (STRAIN SOURCE 3 NEM316); SOURCE 4 ORGANISM_TAXID: 211110; SOURCE 5 STRAIN: NEM316; SOURCE 6 GENE: GBS1143; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINF KEYWDS ADHESIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR S.REGO,M.TILL,P.R.RACE REVDAT 4 06-NOV-24 5DZ8 1 REMARK REVDAT 3 10-AUG-16 5DZ8 1 JRNL REVDAT 2 29-JUN-16 5DZ8 1 JRNL REVDAT 1 22-JUN-16 5DZ8 0 JRNL AUTH S.REGO,T.J.HEAL,G.R.PIDWILL,M.TILL,A.ROBSON,R.J.LAMONT, JRNL AUTH 2 R.B.SESSIONS,H.F.JENKINSON,P.R.RACE,A.H.NOBBS JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF CELL WALL-ANCHORED JRNL TITL 2 POLYPEPTIDE ADHESIN BSPA IN STREPTOCOCCUS AGALACTIAE. JRNL REF J.BIOL.CHEM. V. 291 15985 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27311712 JRNL DOI 10.1074/JBC.M116.726562 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 13981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 982 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03000 REMARK 3 B22 (A**2) : 1.79000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.360 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2551 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2358 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3448 ; 1.779 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5393 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 8.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;39.573 ;25.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;16.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;13.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2950 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 618 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1286 ; 4.129 ; 4.612 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1284 ; 4.114 ; 4.609 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1594 ; 6.154 ; 6.876 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1595 ; 6.158 ; 6.877 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1265 ; 5.073 ; 4.960 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1265 ; 5.065 ; 4.960 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1855 ; 7.558 ; 7.256 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2590 ; 9.944 ;36.038 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2591 ; 9.944 ;36.048 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000208006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 73.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BUFFER SYSTEM 1 AT PH 6.5 (MES, REMARK 280 IMIDAZOLE), 0.1 M AMINO ACIDS AND 37.5% MPD_P1K_P3350 (MORPHEUS REMARK 280 SCREEN, MOLECULAR DIMENSIONS LTD), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.07000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.07000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 298 REMARK 465 ASN A 299 REMARK 465 LYS B 295 REMARK 465 GLY B 296 REMARK 465 VAL B 297 REMARK 465 ASP B 298 REMARK 465 ASN B 299 REMARK 465 ALA B 300 REMARK 465 GLU B 301 REMARK 465 TYR B 302 REMARK 465 GLY B 303 REMARK 465 ASN B 304 REMARK 465 ALA B 372 REMARK 465 ALA B 373 REMARK 465 VAL B 374 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 ARG A 366 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 373 CB REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 GLN B 293 CG CD OE1 NE2 REMARK 470 SER B 305 OG REMARK 470 ILE B 306 CG1 CG2 CD1 REMARK 470 ALA B 309 CB REMARK 470 LYS B 312 CG CD CE NZ REMARK 470 ASP B 325 CG OD1 OD2 REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 ARG B 366 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 370 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 352 OE2 GLU A 416 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 0 C ASN A 285 N 0.201 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 388 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 295 93.71 -54.66 REMARK 500 ASP A 348 0.22 -68.42 REMARK 500 TYR A 361 -69.36 -94.75 REMARK 500 LEU A 411 -51.47 -124.01 REMARK 500 ASP B 325 -88.84 70.02 REMARK 500 GLN B 370 -148.85 -67.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MSE B 307 THR B 308 -145.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 0 -12.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 DBREF 5DZ8 A 285 451 UNP Q8E589 Q8E589_STRA3 285 451 DBREF 5DZ8 B 285 451 UNP Q8E589 Q8E589_STRA3 285 451 SEQADV 5DZ8 GLY A -1 UNP Q8E589 EXPRESSION TAG SEQADV 5DZ8 PRO A 0 UNP Q8E589 EXPRESSION TAG SEQADV 5DZ8 GLY B -1 UNP Q8E589 EXPRESSION TAG SEQADV 5DZ8 PRO B 0 UNP Q8E589 EXPRESSION TAG SEQRES 1 A 169 GLY PRO ASN VAL ALA PHE ASP ILE LYS ALA GLN ALA LYS SEQRES 2 A 169 GLY VAL ASP ASN ALA GLU TYR GLY ASN SER ILE MSE THR SEQRES 3 A 169 ALA LYS THR LYS PRO ASP GLY SER PHE GLU PHE ASN HIS SEQRES 4 A 169 ASP MSE ILE ASP GLY VAL LYS THR ILE GLY TYR GLY LYS SEQRES 5 A 169 LEU THR GLY LYS VAL ASN HIS HIS TYR VAL ALA ASN LYS SEQRES 6 A 169 ASP GLY SER VAL THR ALA PHE VAL ASP SER VAL THR LEU SEQRES 7 A 169 TYR LYS TYR GLU TYR ARG ASN VAL ALA GLN ASN ALA ALA SEQRES 8 A 169 VAL ASN GLN ASN ILE VAL PHE ARG VAL LEU THR LYS ASP SEQRES 9 A 169 GLY ARG PRO ILE PHE GLU LYS ALA HIS ASN GLY ASN LYS SEQRES 10 A 169 THR PHE ALA GLU THR LEU ASN LYS THR LEU GLN LEU ASN SEQRES 11 A 169 LEU LYS TYR GLU LEU LYS PRO HIS ALA SER SER GLY ASN SEQRES 12 A 169 VAL GLU VAL PHE LYS ILE HIS ASP ASP TRP VAL HIS ASP SEQRES 13 A 169 THR HIS GLY SER ALA LEU VAL SER TYR VAL ASN ASN ASN SEQRES 1 B 169 GLY PRO ASN VAL ALA PHE ASP ILE LYS ALA GLN ALA LYS SEQRES 2 B 169 GLY VAL ASP ASN ALA GLU TYR GLY ASN SER ILE MSE THR SEQRES 3 B 169 ALA LYS THR LYS PRO ASP GLY SER PHE GLU PHE ASN HIS SEQRES 4 B 169 ASP MSE ILE ASP GLY VAL LYS THR ILE GLY TYR GLY LYS SEQRES 5 B 169 LEU THR GLY LYS VAL ASN HIS HIS TYR VAL ALA ASN LYS SEQRES 6 B 169 ASP GLY SER VAL THR ALA PHE VAL ASP SER VAL THR LEU SEQRES 7 B 169 TYR LYS TYR GLU TYR ARG ASN VAL ALA GLN ASN ALA ALA SEQRES 8 B 169 VAL ASN GLN ASN ILE VAL PHE ARG VAL LEU THR LYS ASP SEQRES 9 B 169 GLY ARG PRO ILE PHE GLU LYS ALA HIS ASN GLY ASN LYS SEQRES 10 B 169 THR PHE ALA GLU THR LEU ASN LYS THR LEU GLN LEU ASN SEQRES 11 B 169 LEU LYS TYR GLU LEU LYS PRO HIS ALA SER SER GLY ASN SEQRES 12 B 169 VAL GLU VAL PHE LYS ILE HIS ASP ASP TRP VAL HIS ASP SEQRES 13 B 169 THR HIS GLY SER ALA LEU VAL SER TYR VAL ASN ASN ASN MODRES 5DZ8 MSE A 307 MET MODIFIED RESIDUE MODRES 5DZ8 MSE A 323 MET MODIFIED RESIDUE MODRES 5DZ8 MSE B 307 MET MODIFIED RESIDUE MODRES 5DZ8 MSE B 323 MET MODIFIED RESIDUE HET MSE A 307 8 HET MSE A 323 8 HET MSE B 307 8 HET MSE B 323 8 HET ACT A 501 4 HET PEG A 502 7 HET EDO A 503 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 PEG C4 H10 O3 FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *64(H2 O) SHEET 1 AA1 7 MSE A 307 THR A 308 0 SHEET 2 AA1 7 VAL A 286 ALA A 294 -1 N ALA A 292 O MSE A 307 SHEET 3 AA1 7 HIS B 440 ASN B 449 -1 O LEU B 444 N LYS A 291 SHEET 4 AA1 7 VAL A 426 HIS A 437 -1 N ILE A 431 O GLY B 441 SHEET 5 AA1 7 VAL B 426 HIS B 437 -1 O TRP B 435 N HIS A 437 SHEET 6 AA1 7 HIS A 440 ASN A 449 -1 N GLY A 441 O ILE B 431 SHEET 7 AA1 7 VAL B 286 GLN B 293 -1 O LYS B 291 N LEU A 444 SHEET 1 AA2 6 PRO A 389 HIS A 395 0 SHEET 2 AA2 6 GLN A 376 LEU A 383 -1 N ILE A 378 O HIS A 395 SHEET 3 AA2 6 VAL A 426 HIS A 437 -1 O VAL A 436 N ASN A 377 SHEET 4 AA2 6 VAL B 426 HIS B 437 -1 O TRP B 435 N HIS A 437 SHEET 5 AA2 6 GLN B 376 THR B 384 -1 N ASN B 377 O VAL B 436 SHEET 6 AA2 6 PRO B 389 HIS B 395 -1 O ILE B 390 N VAL B 382 SHEET 1 AA3 5 LYS A 310 THR A 311 0 SHEET 2 AA3 5 SER A 316 ILE A 324 -1 O GLU A 318 N LYS A 310 SHEET 3 AA3 5 THR A 329 ALA A 345 -1 O GLY A 331 N MSE A 323 SHEET 4 AA3 5 VAL A 351 ASN A 367 -1 O PHE A 354 N HIS A 342 SHEET 5 AA3 5 PHE A 401 LEU A 417 -1 O LEU A 417 N VAL A 351 SHEET 1 AA4 5 ILE B 306 MSE B 307 0 SHEET 2 AA4 5 SER B 316 MSE B 323 -1 O ASN B 320 N MSE B 307 SHEET 3 AA4 5 GLY B 331 ALA B 345 -1 O GLY B 333 N HIS B 321 SHEET 4 AA4 5 VAL B 351 ASN B 367 -1 O THR B 359 N LYS B 338 SHEET 5 AA4 5 PHE B 401 LEU B 417 -1 O LEU B 417 N VAL B 351 LINK C ILE A 306 N MSE A 307 1555 1555 1.33 LINK C MSE A 307 N THR A 308 1555 1555 1.32 LINK C ASP A 322 N MSE A 323 1555 1555 1.33 LINK C MSE A 323 N ILE A 324 1555 1555 1.35 LINK C ILE B 306 N MSE B 307 1555 1555 1.35 LINK C MSE B 307 N THR B 308 1555 1555 1.34 LINK C ASP B 322 N MSE B 323 1555 1555 1.33 LINK C MSE B 323 N ILE B 324 1555 1555 1.34 CISPEP 1 ASP A 325 GLY A 326 0 -20.91 CISPEP 2 ALA B 309 LYS B 310 0 12.98 SITE 1 AC1 2 LYS A 310 LYS A 312 SITE 1 AC2 9 VAL A 286 PHE A 288 THR A 311 LYS A 312 SITE 2 AC2 9 PRO A 313 TYR A 343 LYS A 362 THR A 404 SITE 3 AC2 9 EDO A 503 SITE 1 AC3 7 ALA A 287 PHE A 288 ASP A 289 LYS A 362 SITE 2 AC3 7 GLU A 364 ALA A 402 PEG A 502 CRYST1 148.140 34.420 92.600 90.00 127.31 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006750 0.000000 0.005144 0.00000 SCALE2 0.000000 0.029053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013578 0.00000