HEADER TRANSPORT PROTEIN 29-SEP-15 5E0Q TITLE CRYSTAL STRUCTURE OF THE NUP98 C-TERMINAL DOMAIN BOUND TO NANOBODY TITLE 2 TP377 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-NUP98 NANOBODY TP377; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: C-TERMINAL DOMAIN, RESIDUES 715-866 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 3 ORGANISM_TAXID: 30538; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BLR; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: XENOPUS TROPICALIS; SOURCE 9 ORGANISM_COMMON: WESTERN CLAWED FROG; SOURCE 10 ORGANISM_TAXID: 8364; SOURCE 11 GENE: NUP98; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BLR KEYWDS NUCLEAR PORE COMPLEX, NUCLEAR TRANSPORT, AUTOPROTEOLYTIC DOMAIN, KEYWDS 2 ANTIBODY, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.PLEINER,S.TRAKHANOV,D.GOERLICH REVDAT 3 10-JAN-24 5E0Q 1 REMARK REVDAT 2 27-APR-16 5E0Q 1 JRNL REVDAT 1 16-DEC-15 5E0Q 0 JRNL AUTH T.PLEINER,M.BATES,S.TRAKHANOV,C.T.LEE,J.E.SCHLIEP,H.CHUG, JRNL AUTH 2 M.BOHNING,H.STARK,H.URLAUB,D.GORLICH JRNL TITL NANOBODIES: SITE-SPECIFIC LABELING FOR SUPER-RESOLUTION JRNL TITL 2 IMAGING, RAPID EPITOPE-MAPPING AND NATIVE PROTEIN COMPLEX JRNL TITL 3 ISOLATION. JRNL REF ELIFE V. 4 11349 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26633879 JRNL DOI 10.7554/ELIFE.11349 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1007 - 4.2247 1.00 2659 140 0.1378 0.1495 REMARK 3 2 4.2247 - 3.3535 1.00 2622 138 0.1500 0.1681 REMARK 3 3 3.3535 - 2.9297 1.00 2607 138 0.1757 0.2060 REMARK 3 4 2.9297 - 2.6619 1.00 2592 136 0.1872 0.2265 REMARK 3 5 2.6619 - 2.4711 1.00 2612 138 0.1745 0.2198 REMARK 3 6 2.4711 - 2.3254 0.99 2593 136 0.1768 0.2178 REMARK 3 7 2.3254 - 2.2089 0.99 2593 136 0.1797 0.2280 REMARK 3 8 2.2089 - 2.1128 0.99 2567 136 0.1899 0.2299 REMARK 3 9 2.1128 - 2.0314 0.99 2589 136 0.2011 0.2659 REMARK 3 10 2.0314 - 1.9613 0.99 2547 134 0.2018 0.2401 REMARK 3 11 1.9613 - 1.9000 0.99 2570 135 0.2364 0.2562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2220 REMARK 3 ANGLE : 1.068 3004 REMARK 3 CHIRALITY : 0.064 323 REMARK 3 PLANARITY : 0.007 396 REMARK 3 DIHEDRAL : 11.624 1331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1557 39.1714 33.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.2891 REMARK 3 T33: 0.3209 T12: -0.0436 REMARK 3 T13: 0.0049 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 3.7327 L22: 5.4192 REMARK 3 L33: 4.9543 L12: 2.8561 REMARK 3 L13: -2.6093 L23: -3.2508 REMARK 3 S TENSOR REMARK 3 S11: 0.3087 S12: -0.4233 S13: 0.0997 REMARK 3 S21: 0.5641 S22: -0.6432 S23: -0.2795 REMARK 3 S31: -0.3101 S32: 0.6738 S33: 0.2565 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2777 40.5030 24.6512 REMARK 3 T TENSOR REMARK 3 T11: 0.2998 T22: 0.2139 REMARK 3 T33: 0.3440 T12: -0.0081 REMARK 3 T13: -0.0223 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 5.1580 L22: 4.7711 REMARK 3 L33: 6.5913 L12: -0.1181 REMARK 3 L13: 0.6591 L23: -0.2135 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: 0.6157 S13: 0.7964 REMARK 3 S21: -0.3255 S22: -0.3201 S23: 0.4311 REMARK 3 S31: -0.5551 S32: 0.3457 S33: 0.2616 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0250 29.0870 25.7928 REMARK 3 T TENSOR REMARK 3 T11: 0.4526 T22: 0.2215 REMARK 3 T33: 0.2762 T12: 0.0133 REMARK 3 T13: 0.0219 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 3.2916 L22: 9.6642 REMARK 3 L33: 3.3264 L12: 2.7338 REMARK 3 L13: -2.3140 L23: -5.3541 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: 0.3697 S13: -0.0255 REMARK 3 S21: -1.1789 S22: 0.0764 S23: 0.1336 REMARK 3 S31: 0.3251 S32: -0.2156 S33: 0.0371 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3767 36.5106 27.8110 REMARK 3 T TENSOR REMARK 3 T11: 0.2848 T22: 0.2398 REMARK 3 T33: 0.3102 T12: 0.0262 REMARK 3 T13: 0.0149 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 4.6421 L22: 7.8428 REMARK 3 L33: 4.2868 L12: 1.8656 REMARK 3 L13: -2.2087 L23: -3.9391 REMARK 3 S TENSOR REMARK 3 S11: 0.1381 S12: -0.0925 S13: -0.1184 REMARK 3 S21: -0.2391 S22: -0.5838 S23: -0.3258 REMARK 3 S31: 0.0772 S32: 0.5492 S33: 0.4283 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8951 36.0733 33.5377 REMARK 3 T TENSOR REMARK 3 T11: 0.3298 T22: 0.2037 REMARK 3 T33: 0.5494 T12: 0.0366 REMARK 3 T13: 0.1004 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 9.2495 L22: 5.9741 REMARK 3 L33: 7.9715 L12: 0.6540 REMARK 3 L13: -1.7070 L23: -6.8591 REMARK 3 S TENSOR REMARK 3 S11: 0.1651 S12: 0.1666 S13: 0.7284 REMARK 3 S21: 0.4839 S22: 0.4095 S23: 0.8891 REMARK 3 S31: -0.3919 S32: -0.6329 S33: -0.6329 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8426 43.9327 29.1244 REMARK 3 T TENSOR REMARK 3 T11: 0.3994 T22: 0.2184 REMARK 3 T33: 0.4701 T12: 0.0273 REMARK 3 T13: 0.0891 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.3645 L22: 6.4248 REMARK 3 L33: 7.6747 L12: 4.6384 REMARK 3 L13: -5.0359 L23: -5.8062 REMARK 3 S TENSOR REMARK 3 S11: 0.4628 S12: -0.1459 S13: 0.6367 REMARK 3 S21: 0.4150 S22: -0.2080 S23: 0.6812 REMARK 3 S31: -0.6666 S32: 0.3190 S33: -0.2071 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 715 THROUGH 726 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9544 21.6380 34.2378 REMARK 3 T TENSOR REMARK 3 T11: 0.2058 T22: 0.2278 REMARK 3 T33: 0.2632 T12: 0.0880 REMARK 3 T13: 0.0061 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 4.1406 L22: 3.6288 REMARK 3 L33: 6.9597 L12: 1.6209 REMARK 3 L13: -0.9908 L23: 4.1019 REMARK 3 S TENSOR REMARK 3 S11: 0.1781 S12: 0.2294 S13: 0.6262 REMARK 3 S21: -0.3621 S22: -0.0206 S23: 0.5066 REMARK 3 S31: -0.6186 S32: -0.2884 S33: -0.0681 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 727 THROUGH 738 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0327 20.0996 41.1085 REMARK 3 T TENSOR REMARK 3 T11: 0.2601 T22: 0.2392 REMARK 3 T33: 0.4279 T12: 0.0389 REMARK 3 T13: 0.1413 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.6197 L22: 7.7034 REMARK 3 L33: 5.6803 L12: -2.9310 REMARK 3 L13: 0.0685 L23: 2.3008 REMARK 3 S TENSOR REMARK 3 S11: 0.3463 S12: 0.0542 S13: 0.5774 REMARK 3 S21: 0.2206 S22: 0.0370 S23: 0.5927 REMARK 3 S31: -0.5352 S32: -0.5427 S33: -0.2548 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 739 THROUGH 755 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8307 25.1255 45.9463 REMARK 3 T TENSOR REMARK 3 T11: 0.4917 T22: 0.2731 REMARK 3 T33: 0.3794 T12: 0.0033 REMARK 3 T13: 0.1874 T23: -0.0706 REMARK 3 L TENSOR REMARK 3 L11: 2.0689 L22: 4.6041 REMARK 3 L33: 0.9420 L12: -0.3439 REMARK 3 L13: -0.2983 L23: 0.1065 REMARK 3 S TENSOR REMARK 3 S11: 0.3036 S12: -0.2097 S13: 0.6163 REMARK 3 S21: 0.4138 S22: -0.0562 S23: 0.4681 REMARK 3 S31: -0.5883 S32: -0.0509 S33: -0.1909 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 756 THROUGH 773 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2651 17.3215 44.4239 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.1929 REMARK 3 T33: 0.1678 T12: -0.0211 REMARK 3 T13: 0.0079 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.5699 L22: 6.1410 REMARK 3 L33: 2.8695 L12: -0.2322 REMARK 3 L13: -2.5501 L23: 0.3178 REMARK 3 S TENSOR REMARK 3 S11: 0.2347 S12: -0.1658 S13: 0.2903 REMARK 3 S21: 0.5192 S22: -0.1209 S23: 0.1657 REMARK 3 S31: -0.2761 S32: 0.1998 S33: -0.0581 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 774 THROUGH 809 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7933 13.8003 41.6488 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.2087 REMARK 3 T33: 0.1897 T12: 0.0001 REMARK 3 T13: 0.0086 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.7478 L22: 5.6015 REMARK 3 L33: 4.0036 L12: 2.4464 REMARK 3 L13: -0.6918 L23: -1.6626 REMARK 3 S TENSOR REMARK 3 S11: 0.1896 S12: -0.1540 S13: -0.0273 REMARK 3 S21: 0.1479 S22: -0.2886 S23: -0.3558 REMARK 3 S31: -0.3594 S32: 0.3451 S33: 0.0563 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 810 THROUGH 819 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6821 -10.0800 37.6461 REMARK 3 T TENSOR REMARK 3 T11: 0.4339 T22: 0.2554 REMARK 3 T33: 0.2332 T12: -0.0260 REMARK 3 T13: 0.0475 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 7.0605 L22: 4.1875 REMARK 3 L33: 5.4469 L12: -3.8666 REMARK 3 L13: -3.9152 L23: 4.7498 REMARK 3 S TENSOR REMARK 3 S11: -0.1966 S12: 0.1598 S13: -0.5470 REMARK 3 S21: -0.5655 S22: -0.0482 S23: 0.3248 REMARK 3 S31: 0.6717 S32: 0.1548 S33: 0.0361 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 820 THROUGH 833 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2888 -14.2929 42.7649 REMARK 3 T TENSOR REMARK 3 T11: 0.4767 T22: 0.2973 REMARK 3 T33: 0.3131 T12: -0.0686 REMARK 3 T13: 0.0063 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 5.8664 L22: 8.8046 REMARK 3 L33: 4.3151 L12: -0.9459 REMARK 3 L13: 1.5504 L23: 5.5279 REMARK 3 S TENSOR REMARK 3 S11: 0.1722 S12: -0.2544 S13: -0.4565 REMARK 3 S21: 0.2259 S22: -0.3846 S23: -0.0390 REMARK 3 S31: 0.6088 S32: -0.8662 S33: 0.1639 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 834 THROUGH 844 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8256 -5.6465 49.2945 REMARK 3 T TENSOR REMARK 3 T11: 0.2968 T22: 0.3247 REMARK 3 T33: 0.3010 T12: 0.0632 REMARK 3 T13: 0.0060 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 8.7560 L22: 8.0529 REMARK 3 L33: 2.9576 L12: 6.1194 REMARK 3 L13: 5.0029 L23: 4.0889 REMARK 3 S TENSOR REMARK 3 S11: 0.2628 S12: 0.6257 S13: -0.6487 REMARK 3 S21: -0.0180 S22: -0.1040 S23: -0.5894 REMARK 3 S31: 0.3467 S32: 0.6733 S33: -0.1343 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 845 THROUGH 866 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4300 2.1467 49.3463 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.2387 REMARK 3 T33: 0.1604 T12: -0.0254 REMARK 3 T13: 0.0106 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.9219 L22: 6.7759 REMARK 3 L33: 4.5407 L12: 1.4187 REMARK 3 L13: -0.6915 L23: -2.3160 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: -0.1323 S13: -0.0950 REMARK 3 S21: 0.0346 S22: -0.2285 S23: -0.3712 REMARK 3 S31: -0.1330 S32: 0.4499 S33: 0.1106 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000214132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.63300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4KRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45 % (W/V) PENTAERYTHRITOL PROPOXYLATE REMARK 280 (17/8 PO/OH), 100 MM TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.95000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.97500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY B 714 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 840 HH22 ARG B 843 1.60 REMARK 500 O HOH A 201 O HOH B 912 1.64 REMARK 500 O HOH A 211 O HOH A 242 2.01 REMARK 500 OD1 ASN B 840 NH2 ARG B 843 2.02 REMARK 500 OD1 ASN A 33 O HOH A 201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 781 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 781 NE - CZ - NH2 ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 726 -7.49 78.00 REMARK 500 TYR B 788 108.87 78.28 REMARK 500 HIS B 865 -179.15 -177.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 5E0Q A 1 128 PDB 5E0Q 5E0Q 1 128 DBREF 5E0Q B 716 866 UNP J7I6Y1 J7I6Y1_XENTR 716 866 SEQADV 5E0Q GLY B 714 UNP J7I6Y1 EXPRESSION TAG SEQADV 5E0Q SER B 715 UNP J7I6Y1 EXPRESSION TAG SEQADV 5E0Q SER B 821 UNP J7I6Y1 CYS 821 ENGINEERED MUTATION SEQRES 1 A 128 GLY SER GLN VAL GLN LEU VAL GLU SER GLY GLY GLY PRO SEQRES 2 A 128 VAL GLU ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 A 128 SER GLY ARG SER PHE SER ASN SER VAL MET ALA TRP PHE SEQRES 4 A 128 ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE LEU SER VAL SEQRES 5 A 128 LEU ASN TRP SER SER GLY ARG THR SER ILE ALA ASP SER SEQRES 6 A 128 VAL LYS GLY ARG PHE THR MET SER ARG ASP PRO ALA LYS SEQRES 7 A 128 ILE THR VAL TYR LEU GLN MET ASN GLY LEU LYS PRO GLU SEQRES 8 A 128 ASP THR ALA VAL TYR TYR CYS ALA ALA SER ASN ARG GLY SEQRES 9 A 128 SER LEU TYR THR LEU ASP ASN GLN ASN ARG TYR GLU ASP SEQRES 10 A 128 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 1 B 153 GLY SER HIS PRO ALA GLY ILE ILE LEU THR ARG ASP SER SEQRES 2 B 153 TYR TYR THR ILE PRO SER MET GLU GLU LEU ALA ARG SER SEQRES 3 B 153 VAL ASP GLU ASN GLY GLU CYS ILE VAL ASN GLY PHE THR SEQRES 4 B 153 ILE GLY ARG GLU GLY PHE GLY SER ILE TYR PHE GLU GLY SEQRES 5 B 153 ILE VAL ASN LEU THR ASN LEU ASP LEU ASP SER ILE VAL SEQRES 6 B 153 HIS ILE ARG ARG LYS GLU VAL ILE VAL TYR VAL ASP ASP SEQRES 7 B 153 GLN ASN LYS PRO PRO LEU GLY GLU GLY LEU ASN ARG PRO SEQRES 8 B 153 ALA GLN VAL THR LEU ASP GLU VAL TRP PRO ILE ASP LYS SEQRES 9 B 153 THR SER ARG SER MET ILE THR SER PRO GLU ARG LEU SER SEQRES 10 B 153 GLU MET ASN TYR LYS SER LYS LEU GLU ASN ALA SER ARG SEQRES 11 B 153 LYS GLN GLY ALA GLN PHE VAL ASP TYR ARG PRO GLU SER SEQRES 12 B 153 GLY SER TRP VAL PHE LYS VAL ASN HIS PHE FORMUL 3 HOH *145(H2 O) HELIX 1 AA1 LYS A 89 THR A 93 5 5 HELIX 2 AA2 ASN A 111 TYR A 115 5 5 HELIX 3 AA3 SER B 732 ARG B 738 1 7 HELIX 4 AA4 ASP B 773 ILE B 777 1 5 HELIX 5 AA5 SER B 825 MET B 832 1 8 HELIX 6 AA6 ASN B 833 GLN B 845 1 13 SHEET 1 AA1 4 GLN A 5 SER A 9 0 SHEET 2 AA1 4 LEU A 20 SER A 27 -1 O SER A 23 N SER A 9 SHEET 3 AA1 4 THR A 80 MET A 85 -1 O MET A 85 N LEU A 20 SHEET 4 AA1 4 PHE A 70 ASP A 75 -1 N THR A 71 O GLN A 84 SHEET 1 AA2 6 GLY A 12 GLU A 15 0 SHEET 2 AA2 6 THR A 122 SER A 127 1 O GLN A 123 N GLY A 12 SHEET 3 AA2 6 ALA A 94 SER A 101 -1 N TYR A 96 O THR A 122 SHEET 4 AA2 6 VAL A 35 GLN A 41 -1 N PHE A 39 O TYR A 97 SHEET 5 AA2 6 GLU A 48 ASN A 54 -1 O GLU A 48 N ARG A 40 SHEET 6 AA2 6 THR A 60 ILE A 62 -1 O SER A 61 N VAL A 52 SHEET 1 AA3 4 GLY A 12 GLU A 15 0 SHEET 2 AA3 4 THR A 122 SER A 127 1 O GLN A 123 N GLY A 12 SHEET 3 AA3 4 ALA A 94 SER A 101 -1 N TYR A 96 O THR A 122 SHEET 4 AA3 4 ASP A 117 TRP A 118 -1 O ASP A 117 N ALA A 100 SHEET 1 AA4 6 TYR B 727 ILE B 730 0 SHEET 2 AA4 6 ILE B 747 ARG B 755 -1 O GLY B 754 N TYR B 728 SHEET 3 AA4 6 GLY B 759 ASN B 768 -1 O VAL B 767 N VAL B 748 SHEET 4 AA4 6 ALA B 805 LEU B 809 -1 O THR B 808 N SER B 760 SHEET 5 AA4 6 SER B 858 VAL B 863 -1 O PHE B 861 N VAL B 807 SHEET 6 AA4 6 GLN B 848 ARG B 853 -1 N GLN B 848 O LYS B 862 SHEET 1 AA5 2 VAL B 778 ARG B 781 0 SHEET 2 AA5 2 GLU B 784 VAL B 787 -1 O GLU B 784 N ARG B 781 SHEET 1 AA6 2 ILE B 815 ASP B 816 0 SHEET 2 AA6 2 SER B 821 MET B 822 -1 O SER B 821 N ASP B 816 CISPEP 1 ILE B 730 PRO B 731 0 -2.80 CRYST1 66.590 66.590 87.900 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015017 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011377 0.00000