HEADER TRANSCRIPTION 05-OCT-15 5E44 TITLE CRYSTAL STRUCTURE OF HOLO-FNR OF A. FISCHERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FNR REGULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 3-250; COMPND 5 SYNONYM: FUMARATE AND NITRATE REDUCTION REGULATORY PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIIVIBRIO FISCHERI; SOURCE 3 ORGANISM_TAXID: 668; SOURCE 4 GENE: FNR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS LABILE DIMER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS REVDAT 3 10-JAN-24 5E44 1 REMARK REVDAT 2 23-DEC-15 5E44 1 JRNL REVDAT 1 16-DEC-15 5E44 0 JRNL AUTH A.VOLBEDA,C.DARNAULT,O.RENOUX,Y.NICOLET,J.C.FONTECILLA-CAMPS JRNL TITL THE CRYSTAL STRUCTURE OF THE GLOBAL ANAEROBIC JRNL TITL 2 TRANSCRIPTIONAL REGULATOR FNR EXPLAINS ITS EXTREMELY JRNL TITL 3 FINE-TUNED MONOMER-DIMER EQUILIBRIUM. JRNL REF SCI ADV V. 1 01086 2015 JRNL REFN ESSN 2375-2548 JRNL PMID 26665177 JRNL DOI 10.1126/SCIADV.1501086 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9-1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.270 REMARK 3 FREE R VALUE TEST SET COUNT : 746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9568 - 4.5310 1.00 3372 149 0.1491 0.1899 REMARK 3 2 4.5310 - 3.5968 1.00 3341 157 0.1688 0.2332 REMARK 3 3 3.5968 - 3.1422 1.00 3334 160 0.2355 0.3208 REMARK 3 4 3.1422 - 2.8550 1.00 3360 142 0.2943 0.3274 REMARK 3 5 2.8550 - 2.6503 0.99 3331 138 0.3560 0.4208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1826 REMARK 3 ANGLE : 1.463 2463 REMARK 3 CHIRALITY : 0.054 283 REMARK 3 PLANARITY : 0.005 315 REMARK 3 DIHEDRAL : 17.527 685 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 35 OR RESID 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9106 -3.0083 -14.5527 REMARK 3 T TENSOR REMARK 3 T11: 1.1982 T22: 2.6189 REMARK 3 T33: 0.9196 T12: 0.3731 REMARK 3 T13: -0.1369 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.7010 L22: 7.7807 REMARK 3 L33: 2.5968 L12: -3.8859 REMARK 3 L13: 0.1285 L23: 3.3345 REMARK 3 S TENSOR REMARK 3 S11: -0.2081 S12: -0.1823 S13: 0.9139 REMARK 3 S21: 0.1092 S22: 0.6033 S23: -1.5107 REMARK 3 S31: -1.5386 S32: -0.1600 S33: 0.5058 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2793 -12.0771 -12.6261 REMARK 3 T TENSOR REMARK 3 T11: 1.4536 T22: 1.9287 REMARK 3 T33: 0.9046 T12: 0.1093 REMARK 3 T13: -0.1967 T23: 0.5591 REMARK 3 L TENSOR REMARK 3 L11: 0.3046 L22: 3.7179 REMARK 3 L33: 2.3669 L12: 1.0004 REMARK 3 L13: 0.3123 L23: 1.9739 REMARK 3 S TENSOR REMARK 3 S11: 0.1459 S12: -1.3018 S13: -0.5876 REMARK 3 S21: -0.7145 S22: 0.1774 S23: 0.0043 REMARK 3 S31: -0.7406 S32: -0.1129 S33: 0.0525 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8969 -8.3699 -25.4697 REMARK 3 T TENSOR REMARK 3 T11: 0.5965 T22: 0.9811 REMARK 3 T33: 0.6889 T12: 0.0579 REMARK 3 T13: -0.0091 T23: 0.1779 REMARK 3 L TENSOR REMARK 3 L11: 5.0281 L22: 1.3958 REMARK 3 L33: 3.1563 L12: -0.5617 REMARK 3 L13: -0.8080 L23: 0.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.4611 S12: -0.9883 S13: -0.7677 REMARK 3 S21: 0.2829 S22: 0.2097 S23: 0.0970 REMARK 3 S31: 0.2286 S32: 0.1369 S33: 0.0009 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6546 1.3523 -42.7423 REMARK 3 T TENSOR REMARK 3 T11: 0.6587 T22: 0.6774 REMARK 3 T33: 0.6559 T12: 0.0512 REMARK 3 T13: -0.0683 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 5.6820 L22: 4.1673 REMARK 3 L33: 1.4116 L12: 0.2043 REMARK 3 L13: 0.2805 L23: -0.5796 REMARK 3 S TENSOR REMARK 3 S11: 0.1005 S12: 0.0377 S13: 0.2911 REMARK 3 S21: -0.5101 S22: -0.2932 S23: -0.2514 REMARK 3 S31: 0.2392 S32: -0.3391 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BIJVOET PAIRS WERE TREATED AS REMARK 3 INDEPENDENT OBSERVATIONS ALLOWING TO MODEL ANOMALOUS REMARK 3 CONTRIBUTIONS OF FE AND S ATOMS, AS THIS GAVE SIGNIFICANTLY REMARK 3 IMPROVED REFINEMENT STATISTICS REMARK 4 REMARK 4 5E44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9607 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 47.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 25.40 REMARK 200 R MERGE (I) : 0.17200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 25.80 REMARK 200 R MERGE FOR SHELL (I) : 4.38900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4I20 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, MES, DITHIONITE, ANAEROBIC, PH REMARK 280 6.4, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 37.75000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 37.75000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 109.05000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 37.75000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 37.75000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 109.05000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 37.75000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 37.75000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 109.05000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 37.75000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 37.75000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 109.05000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 37.75000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.75000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 109.05000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 37.75000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 37.75000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 109.05000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 37.75000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 37.75000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 109.05000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 37.75000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 37.75000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 109.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -75.50000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 TRP A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 PRO A -4 REMARK 465 GLN A -3 REMARK 465 PHE A -2 REMARK 465 GLU A -1 REMARK 465 LYS A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 LYS A 9 REMARK 465 ARG A 10 REMARK 465 ILE A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 CYS A 16 REMARK 465 ALA A 17 REMARK 465 ILE A 18 REMARK 465 ILE A 249 REMARK 465 LYS A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 19 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 LEU A 42 CG CD1 CD2 REMARK 470 ASP A 43 CG OD1 OD2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 ILE A 45 CG1 CG2 CD1 REMARK 470 ILE A 46 CG1 CG2 CD1 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 23 115.09 -176.08 REMARK 500 CYS A 29 -153.58 -85.47 REMARK 500 PRO A 31 30.66 -90.79 REMARK 500 GLU A 47 28.28 80.15 REMARK 500 ARG A 48 73.27 -153.59 REMARK 500 LYS A 50 118.99 -31.42 REMARK 500 LYS A 54 109.16 -50.55 REMARK 500 ASP A 102 -7.53 -54.29 REMARK 500 THR A 118 118.40 -36.90 REMARK 500 ARG A 184 25.18 -78.08 REMARK 500 GLU A 222 -2.25 63.68 REMARK 500 ASP A 235 78.64 -157.18 REMARK 500 ALA A 246 64.27 61.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 SF4 A 301 S2 122.0 REMARK 620 3 SF4 A 301 S3 84.6 105.6 REMARK 620 4 SF4 A 301 S4 128.2 105.3 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 SF4 A 301 S1 110.9 REMARK 620 3 SF4 A 301 S3 126.0 104.6 REMARK 620 4 SF4 A 301 S4 103.5 106.9 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 SF4 A 301 S1 112.3 REMARK 620 3 SF4 A 301 S2 121.7 103.4 REMARK 620 4 SF4 A 301 S4 106.7 106.8 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 122 SG REMARK 620 2 SF4 A 301 S1 119.3 REMARK 620 3 SF4 A 301 S2 105.2 103.8 REMARK 620 4 SF4 A 301 S3 116.6 105.0 105.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 303 DBREF 5E44 A 3 250 UNP Q70ET4 Q70ET4_ALIFS 3 250 SEQADV 5E44 MET A -8 UNP Q70ET4 INITIATING METHIONINE SEQADV 5E44 TRP A -7 UNP Q70ET4 EXPRESSION TAG SEQADV 5E44 SER A -6 UNP Q70ET4 EXPRESSION TAG SEQADV 5E44 HIS A -5 UNP Q70ET4 EXPRESSION TAG SEQADV 5E44 PRO A -4 UNP Q70ET4 EXPRESSION TAG SEQADV 5E44 GLN A -3 UNP Q70ET4 EXPRESSION TAG SEQADV 5E44 PHE A -2 UNP Q70ET4 EXPRESSION TAG SEQADV 5E44 GLU A -1 UNP Q70ET4 EXPRESSION TAG SEQADV 5E44 LYS A 0 UNP Q70ET4 EXPRESSION TAG SEQADV 5E44 ALA A 1 UNP Q70ET4 EXPRESSION TAG SEQADV 5E44 SER A 2 UNP Q70ET4 EXPRESSION TAG SEQRES 1 A 259 MET TRP SER HIS PRO GLN PHE GLU LYS ALA SER SER ASP SEQRES 2 A 259 ASN SER ALA ASN LYS ARG ILE GLN SER GLY GLY CYS ALA SEQRES 3 A 259 ILE HIS CYS GLN ASP CYS SER ILE SER GLN LEU CYS ILE SEQRES 4 A 259 PRO PHE THR LEU ASN ASP SER GLU LEU ASP GLN LEU ASP SEQRES 5 A 259 GLU ILE ILE GLU ARG LYS LYS PRO ILE GLN LYS GLY GLN SEQRES 6 A 259 GLU LEU PHE LYS ALA GLY ASP GLU LEU LYS CYS LEU TYR SEQRES 7 A 259 ALA ILE ARG SER GLY THR ILE LYS SER TYR THR ILE THR SEQRES 8 A 259 GLU GLN GLY ASP GLU GLN ILE THR ALA PHE HIS LEU ALA SEQRES 9 A 259 GLY ASP LEU VAL GLY PHE ASP ALA ILE THR GLU ALA GLN SEQRES 10 A 259 HIS PRO SER PHE ALA GLN ALA LEU GLU THR SER MET VAL SEQRES 11 A 259 CYS GLU ILE PRO TYR GLU ILE LEU ASP ASP LEU SER GLY SEQRES 12 A 259 LYS MET PRO LYS LEU ARG GLN GLN ILE MET ARG LEU MET SEQRES 13 A 259 SER ASN GLU ILE LYS GLY ASP GLN GLU MET ILE LEU LEU SEQRES 14 A 259 LEU SER LYS LYS ASN ALA GLU GLU ARG LEU ALA ALA PHE SEQRES 15 A 259 LEU TYR ASN LEU SER THR ARG PHE HIS GLN ARG GLY PHE SEQRES 16 A 259 SER PRO ARG GLU PHE ARG LEU THR MET THR ARG GLY ASP SEQRES 17 A 259 ILE GLY ASN TYR LEU GLY LEU THR VAL GLU THR ILE SER SEQRES 18 A 259 ARG LEU LEU GLY ARG PHE GLN LYS THR GLU MET LEU THR SEQRES 19 A 259 VAL LYS GLY LYS TYR ILE THR ILE ASN ASP HIS ASP ALA SEQRES 20 A 259 LEU ALA GLU LEU ALA GLY SER ALA LYS GLU ILE LYS HET SF4 A 301 8 HET MPD A 302 8 HET MPD A 303 8 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 SF4 FE4 S4 FORMUL 3 MPD 2(C6 H14 O2) HELIX 1 AA1 ASN A 35 ASP A 43 1 9 HELIX 2 AA2 GLU A 44 ILE A 46 5 3 HELIX 3 AA3 GLY A 100 ILE A 104 5 5 HELIX 4 AA4 TYR A 126 LYS A 135 1 10 HELIX 5 AA5 MET A 136 LYS A 164 1 29 HELIX 6 AA6 ASN A 165 ARG A 184 1 20 HELIX 7 AA7 THR A 196 GLY A 205 1 10 HELIX 8 AA8 THR A 207 THR A 221 1 15 HELIX 9 AA9 ASP A 235 GLY A 244 1 10 SHEET 1 AA1 4 GLU A 57 PHE A 59 0 SHEET 2 AA1 4 PHE A 112 PRO A 125 -1 O ALA A 113 N LEU A 58 SHEET 3 AA1 4 CYS A 67 ILE A 81 -1 N LEU A 68 O ILE A 124 SHEET 4 AA1 4 GLU A 87 HIS A 93 -1 O THR A 90 N SER A 78 SHEET 1 AA2 4 GLU A 57 PHE A 59 0 SHEET 2 AA2 4 PHE A 112 PRO A 125 -1 O ALA A 113 N LEU A 58 SHEET 3 AA2 4 CYS A 67 ILE A 81 -1 N LEU A 68 O ILE A 124 SHEET 4 AA2 4 LEU A 98 VAL A 99 -1 O VAL A 99 N TYR A 69 SHEET 1 AA3 3 GLU A 190 ARG A 192 0 SHEET 2 AA3 3 TYR A 230 ILE A 233 -1 O ILE A 231 N PHE A 191 SHEET 3 AA3 3 LEU A 224 LYS A 227 -1 N THR A 225 O THR A 232 LINK SG CYS A 20 FE1 SF4 A 301 1555 1555 2.40 LINK SG CYS A 23 FE2 SF4 A 301 1555 1555 2.29 LINK SG CYS A 29 FE3 SF4 A 301 1555 1555 2.36 LINK SG CYS A 122 FE4 SF4 A 301 1555 1555 2.33 SITE 1 AC1 6 CYS A 20 CYS A 23 CYS A 29 PRO A 31 SITE 2 AC1 6 ARG A 72 CYS A 122 SITE 1 AC2 4 GLY A 153 GLU A 156 ASN A 176 TYR A 203 SITE 1 AC3 5 GLU A 117 SER A 178 HIS A 182 ARG A 192 SITE 2 AC3 5 HIS A 236 CRYST1 75.500 75.500 218.100 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004585 0.00000