HEADER OXIDOREDUCTASE 12-OCT-15 5E78 TITLE CRYSTAL STRUCTURE OF P450 BM3 HEME DOMAIN VARIANT COMPLEXED WITH TITLE 2 CO(III)SEP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL P-450/NADPH-P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-456; COMPND 5 SYNONYM: CYTOCHROME P450(BM-3),CYTOCHROME P450BM-3, BM3 P450; COMPND 6 EC: 1.14.14.1,1.6.2.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: CYP102A1, CYP102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BM3, P450, MEDIATED ELECTRON TRANSPORT, CO(III)SEP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PANNEERSELVM,A.SHEHZAD,M.BOCOLA,J.MUELLER-DIECKMANN,U.SCHWANEBERG REVDAT 5 10-JAN-24 5E78 1 LINK REVDAT 4 17-JUL-19 5E78 1 REMARK REVDAT 3 06-DEC-17 5E78 1 JRNL REVDAT 2 22-NOV-17 5E78 1 JRNL REVDAT 1 28-SEP-16 5E78 0 JRNL AUTH S.PANNEERSELVAM,A.SHEHZAD,J.MUELLER-DIECKMANN,M.WILMANNS, JRNL AUTH 2 M.BOCOLA,M.D.DAVARI,U.SCHWANEBERG JRNL TITL CRYSTALLOGRAPHIC INSIGHTS INTO A COBALT (III) SEPULCHRATE JRNL TITL 2 BASED ALTERNATIVE COFACTOR SYSTEM OF P450 BM3 MONOOXYGENASE. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1866 134 2018 JRNL REFN ISSN 0006-3002 JRNL PMID 28739446 JRNL DOI 10.1016/J.BBAPAP.2017.07.010 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 72920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3838 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5170 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 272 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 869 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7575 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7227 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10269 ; 1.576 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16685 ; 1.269 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 910 ; 6.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 367 ;36.919 ;24.877 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1356 ;13.530 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;18.261 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1095 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8532 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1720 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3613 ; 2.752 ; 1.371 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3612 ; 2.746 ; 1.370 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4514 ; 3.611 ; 2.035 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4515 ; 3.614 ; 2.035 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3962 ; 4.086 ; 1.761 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3939 ; 4.054 ; 1.747 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5725 ; 5.741 ; 2.459 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9342 ; 8.549 ;13.002 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8852 ; 8.332 ;11.805 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 455 B 3 455 55974 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 455 REMARK 3 ORIGIN FOR THE GROUP (A): -28.7280 -14.9670 12.6280 REMARK 3 T TENSOR REMARK 3 T11: 0.0406 T22: 0.0973 REMARK 3 T33: 0.0618 T12: 0.0141 REMARK 3 T13: -0.0053 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.6351 L22: 0.7508 REMARK 3 L33: 0.8002 L12: 0.1664 REMARK 3 L13: 0.3374 L23: 0.3601 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: -0.1040 S13: -0.2941 REMARK 3 S21: 0.0135 S22: -0.0135 S23: 0.0456 REMARK 3 S31: 0.0380 S32: -0.0731 S33: -0.0251 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 455 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9510 15.1990 -12.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: 0.1188 REMARK 3 T33: 0.0077 T12: -0.0257 REMARK 3 T13: -0.0015 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.0313 L22: 0.6707 REMARK 3 L33: 2.0148 L12: -0.1367 REMARK 3 L13: -0.5119 L23: 0.4228 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.1673 S13: 0.0205 REMARK 3 S21: -0.0626 S22: -0.0334 S23: 0.0390 REMARK 3 S31: -0.0987 S32: -0.0347 S33: 0.0392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000209988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76758 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 2J4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100-160 MM MGCL2, 100 MM MES (PH 6.5) REMARK 280 10-18% PEG 3350 AND 5-10 MM CO(III)SEP, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.48500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.03000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.03000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.48500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ILE A 2 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 PRO A 193 REMARK 465 ASP A 194 REMARK 465 ASP A 195 REMARK 465 PRO A 196 REMARK 465 THR B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 292 NH1 ARG A 296 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 148 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 LEU B 150 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG B 296 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -127.19 54.28 REMARK 500 ASP A 84 39.93 -99.36 REMARK 500 ASP A 231 36.08 -93.87 REMARK 500 ASP A 370 34.90 -98.88 REMARK 500 THR A 436 -125.27 -113.44 REMARK 500 LYS B 15 -126.12 55.30 REMARK 500 ASP B 84 40.06 -100.48 REMARK 500 ALA B 197 -32.29 -37.75 REMARK 500 ASP B 231 37.88 -92.81 REMARK 500 LYS B 349 131.79 -39.83 REMARK 500 THR B 436 -125.59 -112.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1051 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B1018 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 98.0 REMARK 620 3 HEM A 501 NB 86.7 89.9 REMARK 620 4 HEM A 501 NC 83.3 178.6 89.5 REMARK 620 5 HEM A 501 ND 94.3 90.1 179.0 90.5 REMARK 620 6 HOH A 623 O 173.0 86.2 87.8 92.4 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 97.8 REMARK 620 3 HEM B 501 NB 87.1 89.8 REMARK 620 4 HEM B 501 NC 83.8 178.1 89.4 REMARK 620 5 HEM B 501 ND 93.9 90.4 178.9 90.4 REMARK 620 6 HOH B 714 O 174.1 83.3 87.0 94.9 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 502 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5KK B 503 N1 REMARK 620 2 5KK B 503 N6 103.2 REMARK 620 3 5KK B 503 C6 103.9 59.7 REMARK 620 4 5KK B 503 N3 73.8 77.8 32.1 REMARK 620 5 5KK B 503 N4 84.0 88.5 148.2 150.2 REMARK 620 6 5KK B 503 N2 85.6 169.6 113.1 99.7 98.1 REMARK 620 7 5KK B 503 N5 162.3 91.9 91.6 119.2 87.1 80.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5KK B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 504 DBREF 5E78 A 1 455 UNP P14779 CPXB_BACME 2 456 DBREF 5E78 B 1 455 UNP P14779 CPXB_BACME 2 456 SEQADV 5E78 ALA A 87 UNP P14779 PHE 88 ENGINEERED MUTATION SEQADV 5E78 GLY A 281 UNP P14779 VAL 282 ENGINEERED MUTATION SEQADV 5E78 SER A 354 UNP P14779 MET 355 ENGINEERED MUTATION SEQADV 5E78 ALA B 87 UNP P14779 PHE 88 ENGINEERED MUTATION SEQADV 5E78 GLY B 281 UNP P14779 VAL 282 ENGINEERED MUTATION SEQADV 5E78 SER B 354 UNP P14779 MET 355 ENGINEERED MUTATION SEQRES 1 A 455 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 A 455 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 A 455 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 A 455 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 A 455 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 A 455 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 A 455 ARG ASP PHE ALA GLY ASP GLY LEU ALA THR SER TRP THR SEQRES 8 A 455 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 A 455 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 A 455 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 A 455 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 A 455 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 A 455 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 A 455 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 A 455 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 A 455 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 A 455 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 A 455 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 A 455 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 A 455 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 A 455 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 A 455 SER PHE ALA LEU TYR PHE LEU GLY LYS ASN PRO HIS VAL SEQRES 23 A 455 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 A 455 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 A 455 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 A 455 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 A 455 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 A 455 GLU LEU SER VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 A 455 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 A 455 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 A 455 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 A 455 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 A 455 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 A 455 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 A 455 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 1 B 455 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 B 455 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 B 455 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 B 455 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 B 455 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 B 455 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 B 455 ARG ASP PHE ALA GLY ASP GLY LEU ALA THR SER TRP THR SEQRES 8 B 455 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 B 455 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 B 455 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 B 455 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 B 455 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 B 455 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 B 455 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 B 455 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 B 455 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 B 455 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 B 455 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 B 455 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 B 455 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 B 455 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 B 455 SER PHE ALA LEU TYR PHE LEU GLY LYS ASN PRO HIS VAL SEQRES 23 B 455 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 B 455 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 B 455 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 B 455 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 B 455 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 B 455 GLU LEU SER VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 B 455 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 B 455 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 B 455 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 B 455 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 B 455 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 B 455 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 B 455 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU HET HEM A 501 43 HET HEM B 501 43 HET CO B 502 1 HET 5KK B 503 20 HET CL B 504 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CO COBALT (II) ION HETNAM 5KK 1,3,6,8,10,13,16,19-OCTAAZABICYCLO[6.6.6]ICOSANE HETNAM CL CHLORIDE ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 CO CO 2+ FORMUL 6 5KK C12 H30 N8 FORMUL 7 CL CL 1- FORMUL 8 HOH *869(H2 O) HELIX 1 AA1 PHE A 11 LYS A 15 5 5 HELIX 2 AA2 ASN A 16 ASN A 21 5 6 HELIX 3 AA3 LYS A 24 GLY A 37 1 14 HELIX 4 AA4 SER A 54 CYS A 62 1 9 HELIX 5 AA5 SER A 72 GLY A 83 1 12 HELIX 6 AA6 GLY A 85 SER A 89 5 5 HELIX 7 AA7 GLU A 93 LEU A 104 1 12 HELIX 8 AA8 PRO A 105 SER A 108 5 4 HELIX 9 AA9 GLN A 109 GLN A 110 5 2 HELIX 10 AB1 ALA A 111 ARG A 132 1 22 HELIX 11 AB2 VAL A 141 ASN A 159 1 19 HELIX 12 AB3 ASN A 163 ARG A 167 5 5 HELIX 13 AB4 HIS A 171 LEU A 188 1 18 HELIX 14 AB5 TYR A 198 GLY A 227 1 30 HELIX 15 AB6 ASP A 232 GLY A 240 1 9 HELIX 16 AB7 ASP A 250 ASN A 283 1 34 HELIX 17 AB8 ASN A 283 LEU A 298 1 16 HELIX 18 AB9 SER A 304 GLN A 310 1 7 HELIX 19 AC1 LEU A 311 TRP A 325 1 15 HELIX 20 AC2 ILE A 357 HIS A 361 1 5 HELIX 21 AC3 ASP A 363 GLY A 368 1 6 HELIX 22 AC4 ARG A 375 GLU A 380 5 6 HELIX 23 AC5 ASN A 381 ILE A 385 5 5 HELIX 24 AC6 ASN A 395 ALA A 399 5 5 HELIX 25 AC7 GLY A 402 HIS A 420 1 19 HELIX 26 AC8 PHE B 11 LYS B 15 5 5 HELIX 27 AC9 ASN B 16 ASN B 21 5 6 HELIX 28 AD1 LYS B 24 GLY B 37 1 14 HELIX 29 AD2 SER B 54 CYS B 62 1 9 HELIX 30 AD3 SER B 72 GLY B 83 1 12 HELIX 31 AD4 GLY B 85 SER B 89 5 5 HELIX 32 AD5 GLU B 93 LEU B 104 1 12 HELIX 33 AD6 PRO B 105 SER B 108 5 4 HELIX 34 AD7 GLN B 109 GLN B 110 5 2 HELIX 35 AD8 ALA B 111 ARG B 132 1 22 HELIX 36 AD9 VAL B 141 ASN B 159 1 19 HELIX 37 AE1 ASN B 163 ARG B 167 5 5 HELIX 38 AE2 HIS B 171 LEU B 188 1 18 HELIX 39 AE3 ASP B 195 ALA B 197 5 3 HELIX 40 AE4 TYR B 198 GLY B 227 1 30 HELIX 41 AE5 ASP B 232 GLY B 240 1 9 HELIX 42 AE6 ASP B 250 ASN B 283 1 34 HELIX 43 AE7 ASN B 283 LEU B 298 1 16 HELIX 44 AE8 SER B 304 GLN B 310 1 7 HELIX 45 AE9 LEU B 311 TRP B 325 1 15 HELIX 46 AF1 ILE B 357 HIS B 361 1 5 HELIX 47 AF2 ASP B 363 GLY B 368 1 6 HELIX 48 AF3 ARG B 375 GLU B 380 5 6 HELIX 49 AF4 ASN B 381 ILE B 385 5 5 HELIX 50 AF5 ASN B 395 ALA B 399 5 5 HELIX 51 AF6 GLY B 402 HIS B 420 1 19 SHEET 1 AA1 5 ILE A 39 ALA A 44 0 SHEET 2 AA1 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 AA1 5 GLU A 352 LEU A 356 1 O LEU A 356 N LEU A 52 SHEET 4 AA1 5 ALA A 330 ALA A 335 -1 N PHE A 331 O VAL A 355 SHEET 5 AA1 5 PHE A 67 ASN A 70 -1 N ASP A 68 O TYR A 334 SHEET 1 AA2 3 ILE A 139 GLU A 140 0 SHEET 2 AA2 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 AA2 3 PHE A 421 GLU A 424 -1 N GLU A 424 O LYS A 447 SHEET 1 AA3 2 THR A 339 LEU A 341 0 SHEET 2 AA3 2 TYR A 345 LEU A 347 -1 O LEU A 347 N THR A 339 SHEET 1 AA4 2 ILE A 433 GLU A 435 0 SHEET 2 AA4 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 AA5 5 ILE B 39 ALA B 44 0 SHEET 2 AA5 5 ARG B 47 LEU B 52 -1 O THR B 49 N PHE B 42 SHEET 3 AA5 5 GLU B 352 LEU B 356 1 O SER B 354 N LEU B 52 SHEET 4 AA5 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 AA5 5 PHE B 67 ASN B 70 -1 N ASP B 68 O TYR B 334 SHEET 1 AA6 3 ILE B 139 GLU B 140 0 SHEET 2 AA6 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 AA6 3 PHE B 421 GLU B 424 -1 N GLU B 424 O LYS B 447 SHEET 1 AA7 2 THR B 339 LEU B 341 0 SHEET 2 AA7 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 AA8 2 ILE B 433 GLU B 435 0 SHEET 2 AA8 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE HEM A 501 1555 1555 2.20 LINK FE HEM A 501 O HOH A 623 1555 1555 2.33 LINK SG CYS B 400 FE HEM B 501 1555 1555 2.18 LINK FE HEM B 501 O HOH B 714 1555 1555 2.13 LINK CO CO B 502 N1 5KK B 503 1555 1555 2.08 LINK CO CO B 502 N6 5KK B 503 1555 1555 2.35 LINK CO CO B 502 C6 5KK B 503 1555 1555 2.69 LINK CO CO B 502 N3 5KK B 503 1555 1555 2.62 LINK CO CO B 502 N4 5KK B 503 1555 1555 2.31 LINK CO CO B 502 N2 5KK B 503 1555 1555 2.42 LINK CO CO B 502 N5 5KK B 503 1555 1555 2.24 SITE 1 AC1 25 LYS A 69 LEU A 86 ALA A 87 TRP A 96 SITE 2 AC1 25 ALA A 264 GLY A 265 THR A 268 THR A 269 SITE 3 AC1 25 THR A 327 PHE A 331 PRO A 392 PHE A 393 SITE 4 AC1 25 GLY A 394 ARG A 398 ALA A 399 CYS A 400 SITE 5 AC1 25 ILE A 401 GLY A 402 HOH A 623 HOH A 652 SITE 6 AC1 25 HOH A 660 HOH A 693 HOH A 731 HOH A 748 SITE 7 AC1 25 HOH A 750 SITE 1 AC2 27 LYS B 69 LEU B 75 LEU B 86 ALA B 87 SITE 2 AC2 27 TRP B 96 PHE B 107 ALA B 264 GLY B 265 SITE 3 AC2 27 THR B 268 THR B 269 THR B 327 PHE B 331 SITE 4 AC2 27 PRO B 392 PHE B 393 GLY B 394 ARG B 398 SITE 5 AC2 27 ALA B 399 CYS B 400 ILE B 401 GLY B 402 SITE 6 AC2 27 HOH B 616 HOH B 622 HOH B 677 HOH B 690 SITE 7 AC2 27 HOH B 714 HOH B 717 HOH B 803 SITE 1 AC3 1 5KK B 503 SITE 1 AC4 6 GLU B 13 ALA B 191 ASN B 192 ASP B 369 SITE 2 AC4 6 CO B 502 CL B 504 SITE 1 AC5 4 ASN B 192 PRO B 193 ASP B 194 5KK B 503 CRYST1 58.970 128.540 150.060 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016958 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006664 0.00000