HEADER OXIDOREDUCTASE 13-OCT-15 5E7Y TITLE CRYSTAL STRUCTURE OF P450 BM3 HEME DOMAIN M7 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL P-450/NADPH-P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYTOCHROME P450(BM-3),CYTOCHROME P450BM-3; COMPND 5 EC: 1.14.14.1,1.6.2.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: CYP102A1, CYP102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BM3, P450, MEDIATED ELECTRON TRANSPORT, CO(III)SEP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PANNEERSELVM,A.SHEHZAD,M.BOCOLA,J.MUELLER-DIECKMANN,U.SCHWANEBERG REVDAT 3 08-MAY-24 5E7Y 1 LINK REVDAT 2 17-JUL-19 5E7Y 1 REMARK REVDAT 1 25-JAN-17 5E7Y 0 JRNL AUTH S.PANNEERSELVM,A.SHEHZAD,M.BOCOLA,J.MUELLER-DIECKMANN, JRNL AUTH 2 U.SCHWANEBERG JRNL TITL CRYSTAL STRUCTURE OF P450 BM3 HEME DOMAIN M7 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 70364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5232 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.292 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7739 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7376 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10513 ; 1.461 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17047 ; 1.232 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 945 ; 6.064 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 387 ;36.735 ;24.987 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1373 ;13.663 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.527 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1123 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8783 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1769 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3666 ; 1.887 ; 2.314 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3665 ; 1.884 ; 2.313 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4589 ; 2.701 ; 3.458 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4590 ; 2.701 ; 3.458 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4073 ; 2.567 ; 2.618 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4073 ; 2.564 ; 2.618 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5905 ; 3.825 ; 3.811 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8922 ; 5.914 ;18.931 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8800 ; 5.889 ;18.682 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 454 B 5 454 56844 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 455 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2470 0.0930 73.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: 0.0324 REMARK 3 T33: 0.0834 T12: -0.0109 REMARK 3 T13: -0.0056 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.4948 L22: 2.2350 REMARK 3 L33: 1.0159 L12: -0.5626 REMARK 3 L13: -0.6683 L23: 0.7509 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: 0.1207 S13: -0.0961 REMARK 3 S21: -0.0864 S22: -0.0404 S23: 0.1786 REMARK 3 S31: 0.0588 S32: -0.0623 S33: 0.0862 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 455 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5340 49.1660 82.7140 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.0491 REMARK 3 T33: 0.1376 T12: -0.0289 REMARK 3 T13: 0.0468 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 0.8440 L22: 2.4056 REMARK 3 L33: 0.7294 L12: -0.2420 REMARK 3 L13: -0.1495 L23: -0.0600 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: -0.0289 S13: 0.0358 REMARK 3 S21: 0.0200 S22: -0.0379 S23: 0.2817 REMARK 3 S31: -0.1164 S32: -0.0039 S33: -0.0523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100-160 MM MGCL2 100MM MES 6.5 10-18% REMARK 280 PEG3350, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 76.94500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ILE A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 456 REMARK 465 GLY A 457 REMARK 465 ILE A 458 REMARK 465 PRO A 459 REMARK 465 SER A 460 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 THR A 463 REMARK 465 GLU A 464 REMARK 465 GLN A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 LYS A 469 REMARK 465 VAL A 470 REMARK 465 ARG A 471 REMARK 465 THR B 1 REMARK 465 ILE B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 456 REMARK 465 GLY B 457 REMARK 465 ILE B 458 REMARK 465 PRO B 459 REMARK 465 SER B 460 REMARK 465 PRO B 461 REMARK 465 SER B 462 REMARK 465 THR B 463 REMARK 465 GLU B 464 REMARK 465 GLN B 465 REMARK 465 SER B 466 REMARK 465 ALA B 467 REMARK 465 LYS B 468 REMARK 465 LYS B 469 REMARK 465 VAL B 470 REMARK 465 ARG B 471 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -132.46 62.77 REMARK 500 ASP A 84 39.59 -97.97 REMARK 500 PHE A 158 26.89 -150.24 REMARK 500 ASN A 192 71.29 -115.21 REMARK 500 ASP A 231 31.17 -90.92 REMARK 500 GLU A 344 -33.82 -131.36 REMARK 500 ASP A 370 39.66 -84.60 REMARK 500 THR A 436 -124.01 -120.82 REMARK 500 LYS B 15 -133.74 62.32 REMARK 500 ASP B 84 39.80 -99.40 REMARK 500 ASP B 136 -39.80 61.60 REMARK 500 PHE B 158 27.54 -148.81 REMARK 500 PHE B 158 13.18 -142.08 REMARK 500 ASP B 231 31.35 -89.36 REMARK 500 GLU B 344 -33.83 -131.19 REMARK 500 ASP B 370 38.74 -83.44 REMARK 500 THR B 436 -125.91 -127.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 100.1 REMARK 620 3 HEM A 501 NB 86.5 90.1 REMARK 620 4 HEM A 501 NC 82.3 177.3 88.9 REMARK 620 5 HEM A 501 ND 94.6 90.1 178.8 90.9 REMARK 620 6 HOH A 602 O 175.7 80.1 89.2 97.4 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 99.6 REMARK 620 3 HEM B 501 NB 85.4 90.7 REMARK 620 4 HEM B 501 NC 83.1 177.2 88.6 REMARK 620 5 HEM B 501 ND 95.3 89.7 179.1 91.0 REMARK 620 6 HOH B 635 O 175.3 81.4 90.0 95.9 89.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E78 RELATED DB: PDB REMARK 900 5E78 CONTAINS THE SAME PROTEIN COMPLEXED WITH COBALT SEPHULCHRATE DBREF 5E7Y A 1 471 UNP P14779 CPXB_BACME 2 472 DBREF 5E7Y B 1 471 UNP P14779 CPXB_BACME 2 472 SEQADV 5E7Y ALA A 87 UNP P14779 PHE 88 ENGINEERED MUTATION SEQADV 5E7Y GLY A 281 UNP P14779 VAL 282 ENGINEERED MUTATION SEQADV 5E7Y SER A 354 UNP P14779 MET 355 ENGINEERED MUTATION SEQADV 5E7Y ALA B 87 UNP P14779 PHE 88 ENGINEERED MUTATION SEQADV 5E7Y GLY B 281 UNP P14779 VAL 282 ENGINEERED MUTATION SEQADV 5E7Y SER B 354 UNP P14779 MET 355 ENGINEERED MUTATION SEQRES 1 A 471 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 A 471 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 A 471 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 A 471 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 A 471 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 A 471 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 A 471 ARG ASP PHE ALA GLY ASP GLY LEU ALA THR SER TRP THR SEQRES 8 A 471 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 A 471 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 A 471 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 A 471 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 A 471 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 A 471 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 A 471 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 A 471 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 A 471 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 A 471 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 A 471 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 A 471 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 A 471 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 A 471 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 A 471 SER PHE ALA LEU TYR PHE LEU GLY LYS ASN PRO HIS VAL SEQRES 23 A 471 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 A 471 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 A 471 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 A 471 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 A 471 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 A 471 GLU LEU SER VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 A 471 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 A 471 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 A 471 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 A 471 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 A 471 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 A 471 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 A 471 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 36 A 471 GLY GLY ILE PRO SER PRO SER THR GLU GLN SER ALA LYS SEQRES 37 A 471 LYS VAL ARG SEQRES 1 B 471 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 B 471 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 B 471 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 B 471 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 B 471 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 B 471 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 B 471 ARG ASP PHE ALA GLY ASP GLY LEU ALA THR SER TRP THR SEQRES 8 B 471 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 B 471 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 B 471 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 B 471 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 B 471 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 B 471 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 B 471 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 B 471 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 B 471 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 B 471 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 B 471 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 B 471 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 B 471 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 B 471 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 B 471 SER PHE ALA LEU TYR PHE LEU GLY LYS ASN PRO HIS VAL SEQRES 23 B 471 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 B 471 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 B 471 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 B 471 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 B 471 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 B 471 GLU LEU SER VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 B 471 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 B 471 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 B 471 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 B 471 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 B 471 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 B 471 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 B 471 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 36 B 471 GLY GLY ILE PRO SER PRO SER THR GLU GLN SER ALA LYS SEQRES 37 B 471 LYS VAL ARG HET HEM A 501 43 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET HEM B 501 43 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 GOL 8(C3 H8 O3) FORMUL 13 HOH *409(H2 O) HELIX 1 AA1 PHE A 11 LYS A 15 5 5 HELIX 2 AA2 ASN A 16 ASN A 21 5 6 HELIX 3 AA3 LYS A 24 GLY A 37 1 14 HELIX 4 AA4 SER A 54 CYS A 62 1 9 HELIX 5 AA5 SER A 72 GLY A 83 1 12 HELIX 6 AA6 GLY A 85 SER A 89 5 5 HELIX 7 AA7 GLU A 93 LEU A 104 1 12 HELIX 8 AA8 PRO A 105 SER A 108 5 4 HELIX 9 AA9 GLN A 109 GLN A 110 5 2 HELIX 10 AB1 ALA A 111 ARG A 132 1 22 HELIX 11 AB2 VAL A 141 ASN A 159 1 19 HELIX 12 AB3 ASN A 163 ARG A 167 5 5 HELIX 13 AB4 HIS A 171 LEU A 188 1 18 HELIX 14 AB5 ASP A 195 ALA A 197 5 3 HELIX 15 AB6 TYR A 198 GLY A 227 1 30 HELIX 16 AB7 ASP A 232 GLY A 240 1 9 HELIX 17 AB8 ASP A 250 ASN A 283 1 34 HELIX 18 AB9 ASN A 283 LEU A 298 1 16 HELIX 19 AC1 SER A 304 GLN A 310 1 7 HELIX 20 AC2 LEU A 311 TRP A 325 1 15 HELIX 21 AC3 ILE A 357 HIS A 361 1 5 HELIX 22 AC4 ASP A 363 GLY A 368 1 6 HELIX 23 AC5 ARG A 375 GLU A 380 5 6 HELIX 24 AC6 ASN A 381 ILE A 385 5 5 HELIX 25 AC7 ASN A 395 ALA A 399 5 5 HELIX 26 AC8 GLY A 402 HIS A 420 1 19 HELIX 27 AC9 PHE B 11 LYS B 15 5 5 HELIX 28 AD1 ASN B 16 ASN B 21 5 6 HELIX 29 AD2 LYS B 24 GLY B 37 1 14 HELIX 30 AD3 SER B 54 CYS B 62 1 9 HELIX 31 AD4 SER B 72 GLY B 83 1 12 HELIX 32 AD5 GLY B 85 SER B 89 5 5 HELIX 33 AD6 GLU B 93 LEU B 104 1 12 HELIX 34 AD7 PRO B 105 SER B 108 5 4 HELIX 35 AD8 GLN B 109 GLN B 110 5 2 HELIX 36 AD9 ALA B 111 ARG B 132 1 22 HELIX 37 AE1 VAL B 141 ASN B 159 1 19 HELIX 38 AE2 ASN B 163 ARG B 167 5 5 HELIX 39 AE3 HIS B 171 LEU B 188 1 18 HELIX 40 AE4 ASP B 195 ALA B 197 5 3 HELIX 41 AE5 TYR B 198 GLY B 227 1 30 HELIX 42 AE6 ASP B 232 GLY B 240 1 9 HELIX 43 AE7 ASP B 250 ASN B 283 1 34 HELIX 44 AE8 ASN B 283 LEU B 298 1 16 HELIX 45 AE9 SER B 304 GLN B 310 1 7 HELIX 46 AF1 LEU B 311 TRP B 325 1 15 HELIX 47 AF2 ILE B 357 HIS B 361 1 5 HELIX 48 AF3 ASP B 363 GLY B 368 1 6 HELIX 49 AF4 ARG B 375 GLU B 380 5 6 HELIX 50 AF5 ASN B 381 ILE B 385 5 5 HELIX 51 AF6 ASN B 395 ALA B 399 5 5 HELIX 52 AF7 GLY B 402 HIS B 420 1 19 SHEET 1 AA1 5 ILE A 39 ALA A 44 0 SHEET 2 AA1 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 AA1 5 GLU A 352 LEU A 356 1 O SER A 354 N ARG A 50 SHEET 4 AA1 5 ALA A 330 ALA A 335 -1 N LEU A 333 O LEU A 353 SHEET 5 AA1 5 PHE A 67 LYS A 69 -1 N ASP A 68 O TYR A 334 SHEET 1 AA2 3 ILE A 139 GLU A 140 0 SHEET 2 AA2 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 AA2 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 AA3 2 THR A 339 LEU A 341 0 SHEET 2 AA3 2 TYR A 345 LEU A 347 -1 O LEU A 347 N THR A 339 SHEET 1 AA4 2 ILE A 433 GLU A 435 0 SHEET 2 AA4 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 AA5 5 ILE B 39 GLU B 43 0 SHEET 2 AA5 5 VAL B 48 LEU B 52 -1 O TYR B 51 N PHE B 40 SHEET 3 AA5 5 GLU B 352 LEU B 356 1 O SER B 354 N ARG B 50 SHEET 4 AA5 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 AA5 5 PHE B 67 LYS B 69 -1 N ASP B 68 O TYR B 334 SHEET 1 AA6 3 ILE B 139 GLU B 140 0 SHEET 2 AA6 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 AA6 3 PHE B 421 GLU B 424 -1 N ASP B 422 O LYS B 449 SHEET 1 AA7 2 THR B 339 LEU B 341 0 SHEET 2 AA7 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 AA8 2 ILE B 433 GLU B 435 0 SHEET 2 AA8 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE HEM A 501 1555 1555 2.31 LINK FE HEM A 501 O HOH A 602 1555 1555 2.18 LINK SG CYS B 400 FE HEM B 501 1555 1555 2.27 LINK FE HEM B 501 O HOH B 635 1555 1555 2.13 SITE 1 AC1 24 LYS A 69 LEU A 86 ALA A 87 TRP A 96 SITE 2 AC1 24 ALA A 264 GLY A 265 THR A 268 THR A 269 SITE 3 AC1 24 THR A 327 PHE A 331 PRO A 392 PHE A 393 SITE 4 AC1 24 GLY A 394 ARG A 398 ALA A 399 CYS A 400 SITE 5 AC1 24 ILE A 401 GLY A 402 HOH A 602 HOH A 604 SITE 6 AC1 24 HOH A 618 HOH A 637 HOH A 644 HOH A 665 SITE 1 AC2 2 ALA A 264 HOH A 602 SITE 1 AC3 5 ARG A 132 GOL A 506 ASP B 121 VAL B 124 SITE 2 AC3 5 HOH B 615 SITE 1 AC4 4 LYS A 41 ARG A 50 HOH A 624 HOH A 682 SITE 1 AC5 6 LYS A 391 GLY A 394 ASN A 395 GLY A 396 SITE 2 AC5 6 GLN A 403 HOH A 639 SITE 1 AC6 5 GLN A 128 ARG A 132 GOL A 503 ASP B 121 SITE 2 AC6 5 ARG B 161 SITE 1 AC7 26 LYS B 69 LEU B 86 ALA B 87 TRP B 96 SITE 2 AC7 26 ALA B 264 GLY B 265 THR B 268 THR B 269 SITE 3 AC7 26 THR B 327 PHE B 331 PRO B 392 PHE B 393 SITE 4 AC7 26 GLY B 394 ARG B 398 ALA B 399 CYS B 400 SITE 5 AC7 26 ILE B 401 GLY B 402 ALA B 406 GOL B 502 SITE 6 AC7 26 HOH B 607 HOH B 635 HOH B 644 HOH B 648 SITE 7 AC7 26 HOH B 658 HOH B 701 SITE 1 AC8 4 ALA B 328 LEU B 437 HEM B 501 HOH B 635 SITE 1 AC9 6 TRP B 130 LEU B 133 ASN B 134 ALA B 448 SITE 2 AC9 6 SER B 450 HOH B 737 SITE 1 AD1 6 LYS B 391 GLY B 394 ASN B 395 GLY B 396 SITE 2 AD1 6 GLN B 403 HOH B 728 CRYST1 59.510 153.890 61.590 90.00 94.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016804 0.000000 0.001461 0.00000 SCALE2 0.000000 0.006498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016298 0.00000