HEADER IMMUNE SYSTEM 14-OCT-15 5E8D TITLE CRYSTAL STRUCTURE OF HUMAN EPIREGULIN IN COMPLEX WITH THE FAB FRAGMENT TITLE 2 OF MURINE MONOCLONAL ANTIBODY 9E5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROEPIREGULIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-HUMAN EPIREGULIN ANTIBODY 9E5 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 MOL_ID: 3; COMPND 9 MOLECULE: ANTI-HUMAN EPIREGULIN ANTIBODY 9E5 FAB LIGHT CHAIN; COMPND 10 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EREG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_TAXID: 10090 KEYWDS ANTIBODY, IMMUNOGLOBULIN, MONOCLONAL ANTIBODY, EPIDERMAL GROWTH KEYWDS 2 FACTOR, CANCER, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.KADO,E.MIZOHATA,S.NAGATOISHI,M.IIJIMA,K.SHINODA,T.MIYAFUSA, AUTHOR 2 T.NAKAYAMA,T.YOSHIZUMI,A.SUGIYAMA,T.KAWAMURA,Y.H.LEE,H.MATSUMURA, AUTHOR 3 H.DOI,H.FUJITANI,T.KODAMA,Y.SHIBASAKI,K.TSUMOTO,T.INOUE REVDAT 4 19-FEB-20 5E8D 1 JRNL REMARK REVDAT 3 17-FEB-16 5E8D 1 JRNL REVDAT 2 16-DEC-15 5E8D 1 JRNL REVDAT 1 09-DEC-15 5E8D 0 JRNL AUTH Y.KADO,E.MIZOHATA,S.NAGATOISHI,M.IIJIMA,K.SHINODA, JRNL AUTH 2 T.MIYAFUSA,T.NAKAYAMA,T.YOSHIZUMI,A.SUGIYAMA,T.KAWAMURA, JRNL AUTH 3 Y.H.LEE,H.MATSUMURA,H.DOI,H.FUJITANI,T.KODAMA,Y.SHIBASAKI, JRNL AUTH 4 K.TSUMOTO,T.INOUE JRNL TITL EPIREGULIN RECOGNITION MECHANISMS BY ANTI-EPIREGULIN JRNL TITL 2 ANTIBODY 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS JRNL TITL 3 SIMULATION ANALYSES JRNL REF J.BIOL.CHEM. V. 291 2319 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26627827 JRNL DOI 10.1074/JBC.M115.656009 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.250 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 22005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9084 - 4.9462 0.99 2806 137 0.1744 0.2228 REMARK 3 2 4.9462 - 3.9500 0.99 2705 141 0.1622 0.2472 REMARK 3 3 3.9500 - 3.4578 0.99 2661 135 0.1857 0.2718 REMARK 3 4 3.4578 - 3.1449 0.98 2632 138 0.1976 0.3064 REMARK 3 5 3.1449 - 2.9213 0.97 2570 156 0.2114 0.2769 REMARK 3 6 2.9213 - 2.7502 0.96 2559 138 0.2317 0.2953 REMARK 3 7 2.7502 - 2.6132 0.94 2491 149 0.2641 0.3252 REMARK 3 8 2.6132 - 2.5000 0.93 2451 136 0.2951 0.3542 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3713 REMARK 3 ANGLE : 1.329 5035 REMARK 3 CHIRALITY : 0.048 562 REMARK 3 PLANARITY : 0.007 641 REMARK 3 DIHEDRAL : 15.028 1335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.6805 -12.6538 27.0353 REMARK 3 T TENSOR REMARK 3 T11: 0.5194 T22: 0.6438 REMARK 3 T33: 0.4633 T12: 0.1928 REMARK 3 T13: -0.0183 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.8629 L22: 2.8106 REMARK 3 L33: 0.9352 L12: -0.2966 REMARK 3 L13: -0.2364 L23: -0.4385 REMARK 3 S TENSOR REMARK 3 S11: -0.1775 S12: -0.3697 S13: -0.2143 REMARK 3 S21: 0.5717 S22: 0.1751 S23: 0.0243 REMARK 3 S31: 0.1305 S32: 0.3282 S33: -0.0024 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22299 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-(N-MORPHILINO)ETHANSULFONIC ACID REMARK 280 MONOHYDRATE, PEG4000, PH 6.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.30100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.14550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.68450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.30100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.14550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.68450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.30100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.14550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.68450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.30100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.14550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.68450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -28 REMARK 465 PRO A -27 REMARK 465 ALA A -26 REMARK 465 MET A -25 REMARK 465 SER A -24 REMARK 465 CYS A -23 REMARK 465 ILE A -22 REMARK 465 PRO A -21 REMARK 465 GLY A -20 REMARK 465 GLU A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 ASP A -16 REMARK 465 ASN A -15 REMARK 465 CYS A -14 REMARK 465 THR A -13 REMARK 465 ALA A -12 REMARK 465 LEU A -11 REMARK 465 VAL A -10 REMARK 465 GLN A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASP A -6 REMARK 465 ASN A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 VAL A -2 REMARK 465 ALA A -1 REMARK 465 GLN A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 LEU A 46 REMARK 465 ALA H 134 REMARK 465 ALA H 135 REMARK 465 GLN H 136 REMARK 465 CYS H 220 REMARK 465 LEU L 15 REMARK 465 GLY L 16 REMARK 465 CYS L 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN H 138 OG SER H 190 2.03 REMARK 500 OG1 THR H 32 O GLY H 99 2.18 REMARK 500 N GLY L 17 OD1 ASN L 77 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 16 61.12 -115.20 REMARK 500 VAL A 23 -70.91 -55.94 REMARK 500 GLU H 42 -5.67 66.65 REMARK 500 ASP H 56 14.23 58.41 REMARK 500 SER H 85 55.06 38.08 REMARK 500 VAL H 106 -43.01 -132.21 REMARK 500 ASN H 138 -155.10 -115.89 REMARK 500 ASP H 178 -8.29 78.81 REMARK 500 LYS L 18 73.65 165.60 REMARK 500 LYS L 31 1.56 83.14 REMARK 500 THR L 51 -54.20 61.60 REMARK 500 PRO L 56 100.32 -39.06 REMARK 500 SER L 60 32.93 -90.54 REMARK 500 SER L 63 80.45 -153.10 REMARK 500 SER L 76 -87.37 -72.46 REMARK 500 LEU L 78 39.04 -69.51 REMARK 500 ALA L 84 -166.24 -179.09 REMARK 500 TYR L 91 23.08 -155.43 REMARK 500 LEU L 94 -153.10 54.74 REMARK 500 ASN L 156 118.60 -27.87 REMARK 500 SER L 202 117.74 -172.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU L 79 PRO L 80 -49.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AZ2 RELATED DB: PDB DBREF 5E8D A -24 46 UNP O14944 EREG_HUMAN 38 108 DBREF 5E8D H 1 220 PDB 5E8D 5E8D 1 220 DBREF 5E8D L 1 213 PDB 5E8D 5E8D 1 213 SEQADV 5E8D GLY A -28 UNP O14944 EXPRESSION TAG SEQADV 5E8D PRO A -27 UNP O14944 EXPRESSION TAG SEQADV 5E8D ALA A -26 UNP O14944 EXPRESSION TAG SEQADV 5E8D MET A -25 UNP O14944 EXPRESSION TAG SEQRES 1 A 75 GLY PRO ALA MET SER CYS ILE PRO GLY GLU SER SER ASP SEQRES 2 A 75 ASN CYS THR ALA LEU VAL GLN THR GLU ASP ASN PRO ARG SEQRES 3 A 75 VAL ALA GLN VAL SER ILE THR LYS CYS SER SER ASP MET SEQRES 4 A 75 ASN GLY TYR CYS LEU HIS GLY GLN CYS ILE TYR LEU VAL SEQRES 5 A 75 ASP MET SER GLN ASN TYR CYS ARG CYS GLU VAL GLY TYR SEQRES 6 A 75 THR GLY VAL ARG CYS GLU HIS PHE PHE LEU SEQRES 1 H 220 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 H 220 PRO GLY ALA SER VAL LYS LEU SER CYS THR ALA SER GLY SEQRES 3 H 220 PHE ASN ILE LYS ASP THR TYR MET HIS TRP VAL LYS GLN SEQRES 4 H 220 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 220 PRO LEU ASN ASP LYS THR LYS TYR ASP PRO LYS PHE GLN SEQRES 6 H 220 GLY LYS ALA THR ILE THR ALA ASP THR SER SER ASN SER SEQRES 7 H 220 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 220 ALA VAL TYR TYR CYS SER ARG GLY GLY GLY ASP PRO VAL SEQRES 9 H 220 PHE VAL TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 220 ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 220 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 H 220 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 220 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 220 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 220 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 H 220 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 220 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 L 213 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 213 SER LEU GLY GLY LYS VAL THR ILE THR CYS LYS ALA SER SEQRES 3 L 213 GLN ASP ILE ASN LYS TYR ILE ALA TRP TYR GLN HIS LYS SEQRES 4 L 213 PRO GLY LYS GLY PRO ARG LEU LEU ILE HIS TYR THR SER SEQRES 5 L 213 THR LEU HIS PRO GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 L 213 GLY SER GLY ARG ASP TYR SER PHE SER ILE SER ASN LEU SEQRES 7 L 213 GLU PRO GLU ASP ILE ALA THR TYR TYR CYS LEU GLN TYR SEQRES 8 L 213 ASP ASN LEU ARG THR PHE GLY GLY GLY THR LYS LEU GLU SEQRES 9 L 213 ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 10 L 213 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 11 L 213 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 12 L 213 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 13 L 213 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 14 L 213 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 15 L 213 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 16 L 213 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 17 L 213 ASN ARG ASN GLU CYS HET CL H 301 1 HET GOL H 302 6 HET GOL L 301 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CL CL 1- FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *37(H2 O) HELIX 1 AA1 SER A 7 ASN A 11 5 5 HELIX 2 AA2 ASN H 28 THR H 32 5 5 HELIX 3 AA3 PRO H 62 GLN H 65 5 4 HELIX 4 AA4 THR H 87 THR H 91 5 5 HELIX 5 AA5 SER H 161 SER H 163 5 3 HELIX 6 AA6 SER H 191 TRP H 193 5 3 HELIX 7 AA7 PRO H 205 SER H 208 5 4 HELIX 8 AA8 SER L 120 THR L 125 1 6 HELIX 9 AA9 LYS L 182 GLU L 186 1 5 SHEET 1 AA1 3 THR A 4 LYS A 5 0 SHEET 2 AA1 3 GLY A 17 LEU A 22 -1 O TYR A 21 N THR A 4 SHEET 3 AA1 3 GLN A 27 CYS A 32 -1 O TYR A 29 N ILE A 20 SHEET 1 AA2 2 TYR A 36 THR A 37 0 SHEET 2 AA2 2 HIS A 43 PHE A 44 -1 O HIS A 43 N THR A 37 SHEET 1 AA3 4 GLN H 3 GLN H 6 0 SHEET 2 AA3 4 VAL H 18 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 AA3 4 SER H 78 LEU H 83 -1 O LEU H 81 N LEU H 20 SHEET 4 AA3 4 ALA H 68 ASP H 73 -1 N ASP H 73 O SER H 78 SHEET 1 AA4 6 GLU H 10 VAL H 12 0 SHEET 2 AA4 6 THR H 112 VAL H 116 1 O LEU H 113 N GLU H 10 SHEET 3 AA4 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 114 SHEET 4 AA4 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA4 6 GLU H 46 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AA4 6 THR H 58 TYR H 60 -1 O LYS H 59 N ARG H 50 SHEET 1 AA5 4 SER H 125 LEU H 129 0 SHEET 2 AA5 4 MET H 140 TYR H 150 -1 O LEU H 146 N TYR H 127 SHEET 3 AA5 4 LEU H 179 PRO H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 AA5 4 VAL H 168 GLN H 176 -1 N HIS H 169 O SER H 185 SHEET 1 AA6 3 THR H 156 TRP H 159 0 SHEET 2 AA6 3 VAL H 198 HIS H 204 -1 O ASN H 201 N THR H 158 SHEET 3 AA6 3 THR H 209 ILE H 215 -1 O ILE H 215 N VAL H 198 SHEET 1 AA7 4 MET L 4 THR L 5 0 SHEET 2 AA7 4 THR L 20 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 SER L 74 -1 O PHE L 73 N ILE L 21 SHEET 4 AA7 4 SER L 65 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 AA8 5 SER L 10 LEU L 11 0 SHEET 2 AA8 5 THR L 101 LEU L 103 1 O LYS L 102 N LEU L 11 SHEET 3 AA8 5 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 101 SHEET 4 AA8 5 ILE L 33 HIS L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 5 ARG L 45 ILE L 48 -1 O ILE L 48 N TRP L 35 SHEET 1 AA9 4 SER L 10 LEU L 11 0 SHEET 2 AA9 4 THR L 101 LEU L 103 1 O LYS L 102 N LEU L 11 SHEET 3 AA9 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 101 SHEET 4 AA9 4 THR L 96 PHE L 97 -1 O THR L 96 N GLN L 90 SHEET 1 AB1 4 THR L 113 PHE L 117 0 SHEET 2 AB1 4 GLY L 128 PHE L 138 -1 O VAL L 132 N PHE L 117 SHEET 3 AB1 4 TYR L 172 THR L 181 -1 O MET L 174 N LEU L 135 SHEET 4 AB1 4 VAL L 158 TRP L 162 -1 N SER L 161 O SER L 175 SHEET 1 AB2 4 SER L 152 GLU L 153 0 SHEET 2 AB2 4 ASN L 144 ILE L 149 -1 N ILE L 149 O SER L 152 SHEET 3 AB2 4 SER L 190 THR L 196 -1 O THR L 192 N LYS L 148 SHEET 4 AB2 4 ILE L 204 ASN L 209 -1 O ILE L 204 N ALA L 195 SSBOND 1 CYS A 6 CYS A 19 1555 1555 2.03 SSBOND 2 CYS A 14 CYS A 30 1555 1555 2.03 SSBOND 3 CYS A 32 CYS A 41 1555 1555 2.05 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 5 CYS H 145 CYS H 200 1555 1555 2.03 SSBOND 6 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 7 CYS L 133 CYS L 193 1555 1555 2.04 CISPEP 1 PHE H 151 PRO H 152 0 -1.16 CISPEP 2 GLU H 153 PRO H 154 0 -1.69 CISPEP 3 TRP H 193 PRO H 194 0 7.37 CISPEP 4 SER L 7 PRO L 8 0 0.14 CISPEP 5 TYR L 139 PRO L 140 0 2.87 SITE 1 AC1 1 LEU H 175 SITE 1 AC2 3 PRO H 124 VAL H 126 LYS H 213 SITE 1 AC3 9 PHE H 171 PRO H 172 THR H 181 LEU H 182 SITE 2 AC3 9 SER H 183 LEU L 159 SER L 175 SER L 176 SITE 3 AC3 9 THR L 177 CRYST1 68.602 100.291 187.369 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005337 0.00000