HEADER TRANSFERASE 14-OCT-15 5E8H TITLE CRYSTAL STRUCTURE OF GERANYLFARNESYL PYROPHOSPHATE SYNTHASES 2 FROM TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GGPS3,(2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE 3, COMPND 5 DIMETHYLALLYLTRANSTRANSFERASE 3,FARNESYL DIPHOSPHATE SYNTHASE 3, COMPND 6 FARNESYLTRANSTRANSFERASE 3,GERANYLTRANSTRANSFERASE 3; COMPND 7 EC: 2.5.1.-,2.5.1.1,2.5.1.29,2.5.1.10; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: GGPP3, AT3G14550, MIE1.5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GFPPS, PRENYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.WANG,Q.CHEN,G.WANG,P.ZHANG REVDAT 2 25-DEC-19 5E8H 1 JRNL REMARK REVDAT 1 11-NOV-15 5E8H 0 JRNL AUTH C.WANG,Q.CHEN,D.FAN,J.LI,G.WANG,P.ZHANG JRNL TITL STRUCTURAL ANALYSES OF SHORT-CHAIN PRENYLTRANSFERASES JRNL TITL 2 IDENTIFY AN EVOLUTIONARILY CONSERVED GFPPS CLADE IN JRNL TITL 3 BRASSICACEAE PLANTS. JRNL REF MOL PLANT V. 9 195 2016 JRNL REFN ESSN 1752-9867 JRNL PMID 26537048 JRNL DOI 10.1016/J.MOLP.2015.10.010 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 28044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5246 - 4.9270 0.81 2550 137 0.1980 0.2240 REMARK 3 2 4.9270 - 3.9122 0.87 2642 124 0.1670 0.1799 REMARK 3 3 3.9122 - 3.4181 0.72 2163 126 0.2038 0.2185 REMARK 3 4 3.4181 - 3.1057 0.93 2770 153 0.2283 0.2880 REMARK 3 5 3.1057 - 2.8832 0.94 2782 140 0.2297 0.2418 REMARK 3 6 2.8832 - 2.7133 0.94 2809 135 0.2252 0.2573 REMARK 3 7 2.7133 - 2.5775 0.95 2800 137 0.2252 0.2598 REMARK 3 8 2.5775 - 2.4653 0.95 2778 156 0.2198 0.2478 REMARK 3 9 2.4653 - 2.3704 0.95 2809 149 0.2082 0.2454 REMARK 3 10 2.3704 - 2.2886 0.86 2542 142 0.2166 0.2275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4178 REMARK 3 ANGLE : 1.473 5645 REMARK 3 CHIRALITY : 0.060 683 REMARK 3 PLANARITY : 0.005 723 REMARK 3 DIHEDRAL : 14.460 1545 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.9888 88.6908 129.2486 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1585 REMARK 3 T33: 0.1185 T12: -0.0210 REMARK 3 T13: 0.0035 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.6572 L22: 1.4471 REMARK 3 L33: 0.5361 L12: -0.4847 REMARK 3 L13: 0.1639 L23: -0.2568 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: -0.0443 S13: -0.0246 REMARK 3 S21: -0.0053 S22: 0.0505 S23: 0.0780 REMARK 3 S31: 0.0042 S32: -0.0780 S33: -0.0083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28044 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 2% PEG 400, REMARK 280 PH7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.62250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.08600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.08600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.62250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 SER A -13 REMARK 465 ALA A -12 REMARK 465 LEU A -11 REMARK 465 THR A -10 REMARK 465 SER A -9 REMARK 465 GLN A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 ASP A -4 REMARK 465 MET A -3 REMARK 465 ILE A -2 REMARK 465 PRO A -1 REMARK 465 PRO A 0 REMARK 465 GLU A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 ALA A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 ARG A 174 REMARK 465 LEU A 175 REMARK 465 ASN A 176 REMARK 465 PRO A 177 REMARK 465 ASP A 178 REMARK 465 LYS A 179 REMARK 465 VAL A 180 REMARK 465 LEU A 245 REMARK 465 GLY A 246 REMARK 465 LYS A 247 REMARK 465 THR A 248 REMARK 465 ALA A 249 REMARK 465 GLY A 250 REMARK 465 LYS A 251 REMARK 465 ASP A 252 REMARK 465 VAL A 253 REMARK 465 MET A 254 REMARK 465 ALA A 255 REMARK 465 GLY A 256 REMARK 465 LYS A 257 REMARK 465 ARG A 305 REMARK 465 HIS A 306 REMARK 465 ASN A 307 REMARK 465 LEU A 308 REMARK 465 GLU A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 MET B -14 REMARK 465 SER B -13 REMARK 465 ALA B -12 REMARK 465 LEU B -11 REMARK 465 THR B -10 REMARK 465 SER B -9 REMARK 465 GLN B -8 REMARK 465 GLY B -7 REMARK 465 GLY B -6 REMARK 465 ARG B -5 REMARK 465 ASP B -4 REMARK 465 MET B -3 REMARK 465 ILE B -2 REMARK 465 PRO B -1 REMARK 465 PRO B 0 REMARK 465 GLU B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 CYS B 4 REMARK 465 ASN B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 38 REMARK 465 THR B 39 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 ARG B 174 REMARK 465 LEU B 175 REMARK 465 ASN B 176 REMARK 465 PRO B 177 REMARK 465 ASP B 178 REMARK 465 LYS B 179 REMARK 465 THR B 239 REMARK 465 LYS B 240 REMARK 465 SER B 241 REMARK 465 THR B 242 REMARK 465 GLU B 243 REMARK 465 GLU B 244 REMARK 465 LEU B 245 REMARK 465 GLY B 246 REMARK 465 LYS B 247 REMARK 465 THR B 248 REMARK 465 ALA B 249 REMARK 465 GLY B 250 REMARK 465 LYS B 251 REMARK 465 ASP B 252 REMARK 465 VAL B 253 REMARK 465 MET B 254 REMARK 465 ALA B 255 REMARK 465 GLY B 256 REMARK 465 LYS B 257 REMARK 465 HIS B 306 REMARK 465 ASN B 307 REMARK 465 LEU B 308 REMARK 465 GLU B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 167 CG SD CE REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 HIS B 7 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 104 O HOH A 401 1.80 REMARK 500 NE ARG B 19 O HOH B 401 1.83 REMARK 500 O HOH A 520 O HOH A 524 1.85 REMARK 500 O HOH A 499 O HOH A 515 1.86 REMARK 500 N GLU A 183 O HOH A 402 1.87 REMARK 500 NH2 ARG B 19 O HOH B 401 1.87 REMARK 500 NH2 ARG A 104 O HOH A 403 1.88 REMARK 500 N LEU B 258 O HOH B 402 1.88 REMARK 500 O ASN A 5 O HOH A 404 1.89 REMARK 500 OH TYR B 260 O HOH B 403 1.89 REMARK 500 O HOH B 509 O HOH B 532 1.91 REMARK 500 CA ASP A 6 O HOH A 404 1.91 REMARK 500 O HOH A 517 O HOH A 522 1.92 REMARK 500 NH2 ARG A 262 O HOH A 405 1.93 REMARK 500 O HOH A 511 O HOH A 513 1.95 REMARK 500 N GLY B 52 O HOH B 404 1.97 REMARK 500 NH1 ARG A 104 O HOH A 406 1.98 REMARK 500 C GLY B 51 O HOH B 404 1.99 REMARK 500 O HOH A 435 O HOH A 445 1.99 REMARK 500 O HOH B 408 O HOH B 412 2.00 REMARK 500 N HIS A 184 O HOH A 402 2.00 REMARK 500 NE ARG A 262 O HOH A 405 2.00 REMARK 500 C LEU A 182 O HOH A 402 2.01 REMARK 500 O GLY A 181 O HOH A 402 2.01 REMARK 500 O HOH B 426 O HOH B 487 2.02 REMARK 500 O LYS B 291 O HOH B 405 2.03 REMARK 500 O HOH B 502 O HOH B 531 2.03 REMARK 500 O HOH B 491 O HOH B 514 2.04 REMARK 500 C ASN A 5 O HOH A 404 2.06 REMARK 500 NH2 ARG A 155 O HOH A 407 2.06 REMARK 500 O HOH B 424 O HOH B 439 2.07 REMARK 500 O HOH B 470 O HOH B 479 2.08 REMARK 500 NZ LYS A 220 O HOH A 408 2.08 REMARK 500 O VAL A 141 O HOH A 409 2.08 REMARK 500 NH2 ARG A 104 O HOH A 406 2.09 REMARK 500 OE2 GLU B 198 O HOH B 406 2.09 REMARK 500 O HOH B 500 O HOH B 512 2.10 REMARK 500 CG GLU B 186 O HOH B 403 2.10 REMARK 500 OE1 GLU A 22 O HOH A 410 2.10 REMARK 500 O HOH A 451 O HOH A 463 2.11 REMARK 500 OE1 GLN A 230 O HOH A 411 2.11 REMARK 500 O LEU A 49 O HOH A 412 2.11 REMARK 500 O HOH B 417 O HOH B 522 2.11 REMARK 500 OE1 GLU B 65 O HOH B 407 2.11 REMARK 500 CZ ARG B 19 O HOH B 401 2.12 REMARK 500 OE1 GLU B 36 O HOH B 408 2.12 REMARK 500 N ASP A 6 O HOH A 404 2.14 REMARK 500 O HIS A 184 O HOH A 413 2.16 REMARK 500 SD MET B 167 O HOH A 470 2.16 REMARK 500 O HOH B 516 O HOH B 520 2.16 REMARK 500 REMARK 500 THIS ENTRY HAS 54 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 97 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 LEU A 218 CA - CB - CG ANGL. DEV. = -17.7 DEGREES REMARK 500 PRO A 289 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 PRO B 37 C - N - CA ANGL. DEV. = 23.5 DEGREES REMARK 500 PRO B 37 C - N - CD ANGL. DEV. = -21.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 34 13.16 -63.37 REMARK 500 ARG A 35 153.94 -47.43 REMARK 500 MET A 97 -77.03 -108.49 REMARK 500 LYS A 240 18.50 -141.78 REMARK 500 MET B 97 -71.92 -123.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 138 GLY B 139 30.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 525 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 526 DISTANCE = 7.04 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E8K RELATED DB: PDB REMARK 900 RELATED ID: 5E8L RELATED DB: PDB DBREF 5E8H A -13 307 UNP Q9LUD9 GGPP3_ARATH 40 360 DBREF 5E8H B -13 307 UNP Q9LUD9 GGPP3_ARATH 40 360 SEQADV 5E8H MET A -14 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H LEU A 308 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H GLU A 309 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS A 310 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS A 311 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS A 312 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS A 313 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS A 314 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS A 315 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H MET B -14 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H LEU B 308 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H GLU B 309 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS B 310 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS B 311 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS B 312 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS B 313 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS B 314 UNP Q9LUD9 EXPRESSION TAG SEQADV 5E8H HIS B 315 UNP Q9LUD9 EXPRESSION TAG SEQRES 1 A 330 MET SER ALA LEU THR SER GLN GLY GLY ARG ASP MET ILE SEQRES 2 A 330 PRO PRO GLU GLY LYS CYS ASN ASP HIS ASN SER ALA PHE SEQRES 3 A 330 ASP PHE LYS LEU TYR MET ILE ARG LYS ALA GLU SER VAL SEQRES 4 A 330 ASN ALA ALA LEU ASP VAL SER VAL PRO LEU ARG GLU PRO SEQRES 5 A 330 LEU THR VAL GLN GLU ALA VAL ARG TYR SER LEU LEU ALA SEQRES 6 A 330 GLY GLY LYS ARG VAL ARG PRO LEU LEU CYS ILE ALA VAL SEQRES 7 A 330 CYS GLU LEU VAL GLY GLY ASP GLU ALA THR ALA MET SER SEQRES 8 A 330 ALA ALA CYS ALA VAL GLU MET ILE HIS THR SER SER LEU SEQRES 9 A 330 ILE HIS ASP ASP LEU PRO CYS MET ASP ASN ALA ASP LEU SEQRES 10 A 330 ARG ARG GLY LYS PRO THR ASN HIS LYS VAL TYR GLY GLU SEQRES 11 A 330 ASP MET ALA VAL LEU ALA GLY ASP ALA LEU LEU ALA LEU SEQRES 12 A 330 ALA PHE GLU HIS MET THR VAL VAL SER SER GLY LEU VAL SEQRES 13 A 330 ALA PRO GLU ARG MET ILE ARG ALA VAL VAL GLU LEU ALA SEQRES 14 A 330 ARG ALA ILE GLY THR THR GLY LEU VAL ALA GLY GLN MET SEQRES 15 A 330 ILE ASP LEU ALA SER GLU ARG LEU ASN PRO ASP LYS VAL SEQRES 16 A 330 GLY LEU GLU HIS LEU GLU PHE ILE HIS LEU HIS LYS THR SEQRES 17 A 330 ALA ALA LEU LEU GLU ALA ALA ALA VAL LEU GLY VAL ILE SEQRES 18 A 330 MET GLY GLY GLY THR GLU GLU GLU ILE GLU LYS LEU ARG SEQRES 19 A 330 LYS TYR ALA ARG CYS ILE GLY LEU LEU PHE GLN VAL VAL SEQRES 20 A 330 ASP ASP ILE LEU ASP VAL THR LYS SER THR GLU GLU LEU SEQRES 21 A 330 GLY LYS THR ALA GLY LYS ASP VAL MET ALA GLY LYS LEU SEQRES 22 A 330 THR TYR PRO ARG LEU ILE GLY LEU GLU ARG SER LYS GLU SEQRES 23 A 330 VAL ALA GLU LYS LEU ARG ARG GLU ALA GLU GLU GLN LEU SEQRES 24 A 330 LEU GLY PHE ASP PRO SER LYS ALA ALA PRO LEU VAL ALA SEQRES 25 A 330 LEU ALA SER TYR ILE ALA CYS ARG HIS ASN LEU GLU HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS SEQRES 1 B 330 MET SER ALA LEU THR SER GLN GLY GLY ARG ASP MET ILE SEQRES 2 B 330 PRO PRO GLU GLY LYS CYS ASN ASP HIS ASN SER ALA PHE SEQRES 3 B 330 ASP PHE LYS LEU TYR MET ILE ARG LYS ALA GLU SER VAL SEQRES 4 B 330 ASN ALA ALA LEU ASP VAL SER VAL PRO LEU ARG GLU PRO SEQRES 5 B 330 LEU THR VAL GLN GLU ALA VAL ARG TYR SER LEU LEU ALA SEQRES 6 B 330 GLY GLY LYS ARG VAL ARG PRO LEU LEU CYS ILE ALA VAL SEQRES 7 B 330 CYS GLU LEU VAL GLY GLY ASP GLU ALA THR ALA MET SER SEQRES 8 B 330 ALA ALA CYS ALA VAL GLU MET ILE HIS THR SER SER LEU SEQRES 9 B 330 ILE HIS ASP ASP LEU PRO CYS MET ASP ASN ALA ASP LEU SEQRES 10 B 330 ARG ARG GLY LYS PRO THR ASN HIS LYS VAL TYR GLY GLU SEQRES 11 B 330 ASP MET ALA VAL LEU ALA GLY ASP ALA LEU LEU ALA LEU SEQRES 12 B 330 ALA PHE GLU HIS MET THR VAL VAL SER SER GLY LEU VAL SEQRES 13 B 330 ALA PRO GLU ARG MET ILE ARG ALA VAL VAL GLU LEU ALA SEQRES 14 B 330 ARG ALA ILE GLY THR THR GLY LEU VAL ALA GLY GLN MET SEQRES 15 B 330 ILE ASP LEU ALA SER GLU ARG LEU ASN PRO ASP LYS VAL SEQRES 16 B 330 GLY LEU GLU HIS LEU GLU PHE ILE HIS LEU HIS LYS THR SEQRES 17 B 330 ALA ALA LEU LEU GLU ALA ALA ALA VAL LEU GLY VAL ILE SEQRES 18 B 330 MET GLY GLY GLY THR GLU GLU GLU ILE GLU LYS LEU ARG SEQRES 19 B 330 LYS TYR ALA ARG CYS ILE GLY LEU LEU PHE GLN VAL VAL SEQRES 20 B 330 ASP ASP ILE LEU ASP VAL THR LYS SER THR GLU GLU LEU SEQRES 21 B 330 GLY LYS THR ALA GLY LYS ASP VAL MET ALA GLY LYS LEU SEQRES 22 B 330 THR TYR PRO ARG LEU ILE GLY LEU GLU ARG SER LYS GLU SEQRES 23 B 330 VAL ALA GLU LYS LEU ARG ARG GLU ALA GLU GLU GLN LEU SEQRES 24 B 330 LEU GLY PHE ASP PRO SER LYS ALA ALA PRO LEU VAL ALA SEQRES 25 B 330 LEU ALA SER TYR ILE ALA CYS ARG HIS ASN LEU GLU HIS SEQRES 26 B 330 HIS HIS HIS HIS HIS FORMUL 3 HOH *259(H2 O) HELIX 1 AA1 ASP A 6 VAL A 32 1 27 HELIX 2 AA2 PRO A 37 LEU A 49 1 13 HELIX 3 AA3 ARG A 54 VAL A 67 1 14 HELIX 4 AA4 ASP A 70 LEU A 94 1 25 HELIX 5 AA5 THR A 108 GLY A 114 1 7 HELIX 6 AA6 GLY A 114 SER A 138 1 25 HELIX 7 AA7 ALA A 142 GLY A 158 1 17 HELIX 8 AA8 GLY A 161 ASP A 169 1 9 HELIX 9 AA9 LEU A 182 THR A 193 1 12 HELIX 10 AB1 THR A 193 GLY A 208 1 16 HELIX 11 AB2 THR A 211 SER A 241 1 31 HELIX 12 AB3 THR A 259 ILE A 264 1 6 HELIX 13 AB4 GLY A 265 GLN A 283 1 19 HELIX 14 AB5 ASP A 288 CYS A 304 1 17 HELIX 15 AB6 ASN B 8 VAL B 32 1 25 HELIX 16 AB7 GLN B 41 LEU B 49 1 9 HELIX 17 AB8 ARG B 54 VAL B 67 1 14 HELIX 18 AB9 ASP B 70 LEU B 94 1 25 HELIX 19 AC1 THR B 108 GLY B 114 1 7 HELIX 20 AC2 GLY B 114 SER B 138 1 25 HELIX 21 AC3 ALA B 142 GLY B 158 1 17 HELIX 22 AC4 GLY B 161 ALA B 171 1 11 HELIX 23 AC5 GLY B 181 THR B 193 1 13 HELIX 24 AC6 THR B 193 GLY B 208 1 16 HELIX 25 AC7 THR B 211 ASP B 237 1 27 HELIX 26 AC8 THR B 259 ILE B 264 1 6 HELIX 27 AC9 GLY B 265 LEU B 284 1 20 HELIX 28 AD1 ASP B 288 CYS B 304 1 17 SHEET 1 AA1 2 LEU A 102 ARG A 103 0 SHEET 2 AA1 2 LYS A 106 PRO A 107 -1 O LYS A 106 N ARG A 103 SHEET 1 AA2 2 LEU B 102 ARG B 103 0 SHEET 2 AA2 2 LYS B 106 PRO B 107 -1 O LYS B 106 N ARG B 103 SSBOND 1 CYS A 4 CYS A 304 1555 1555 2.03 CISPEP 1 GLU A 36 PRO A 37 0 7.15 CISPEP 2 GLU B 36 PRO B 37 0 7.20 CRYST1 77.245 77.090 114.172 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012946 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008759 0.00000