HEADER METAL TRANSPORT 20-OCT-15 5EC6 TITLE THE APO CRYSTAL STRUCTURE OF HAEMOGLOBIN RECEPTOR HPUA FROM KINGELLA TITLE 2 DENITRIFICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN-HAPTOGLOBIN-UTILIZATION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KINGELLA DENITRIFICANS ATCC 33394; SOURCE 3 ORGANISM_TAXID: 888741; SOURCE 4 ATCC: 33394; SOURCE 5 GENE: HMPREF9098_0447; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OUTER MEMBRANE, LIPOPROTEIN, RECEPTOR, BETA BARREL, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.T.WONG,J.A.GARNETT,S.A.HARE REVDAT 6 15-MAR-23 5EC6 1 COMPND SOURCE REMARK DBREF REVDAT 6 2 1 SEQADV SEQRES HET HETNAM REVDAT 6 3 1 HETSYN FORMUL REVDAT 5 23-OCT-19 5EC6 1 SEQADV REVDAT 4 21-AUG-19 5EC6 1 SEQADV REVDAT 3 13-SEP-17 5EC6 1 ATOM REVDAT 2 30-DEC-15 5EC6 1 JRNL REVDAT 1 04-NOV-15 5EC6 0 JRNL AUTH C.T.WONG,Y.XU,A.GUPTA,J.A.GARNETT,S.J.MATTHEWS,S.A.HARE JRNL TITL STRUCTURAL ANALYSIS OF HAEMOGLOBIN BINDING BY HPUA FROM THE JRNL TITL 2 NEISSERIACEAE FAMILY. JRNL REF NAT COMMUN V. 6 10172 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26671256 JRNL DOI 10.1038/NCOMMS10172 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : 0.81000 REMARK 3 B33 (A**2) : -1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.430 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2342 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2156 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3191 ; 1.608 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4992 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2731 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 527 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 1.947 ; 2.298 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1226 ; 1.939 ; 2.295 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1536 ; 3.014 ; 3.432 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5EC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-14; 02-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : DIAMOND; DIAMOND REMARK 200 BEAMLINE : I04; I04 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008; 1.605 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; COBALT SAD REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; DECTRIS REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54716 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 72.457 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.85300 REMARK 200 R SYM FOR SHELL (I) : 0.85300 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM IMIDAZOLE, 150 MM LITHIUM REMARK 280 SULFATE, 6% PEG 3000, PH 7.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.60500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.23500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.90750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.23500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.30250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.23500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.23500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.90750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.23500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.23500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.30250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 ILE A 7 REMARK 465 ASN A 8 REMARK 465 GLU A 9 REMARK 465 PRO A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 TYR A 198 REMARK 465 SER A 199 REMARK 465 PRO A 200 REMARK 465 TYR A 201 REMARK 465 ASN A 202 REMARK 465 THR A 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 509 O HOH A 540 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 506 O HOH A 537 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 270 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 45 56.77 -150.26 REMARK 500 ASN A 87 40.68 -106.75 REMARK 500 THR A 96 -169.33 -108.84 REMARK 500 SER A 125 25.28 45.29 REMARK 500 MET A 128 82.71 59.09 REMARK 500 ASP A 187 -0.47 65.72 REMARK 500 ARG A 238 -60.12 -107.81 REMARK 500 ALA A 266 128.69 85.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 121 ASN A 122 -148.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 DBREF 5EC6 A 6 322 UNP F0EX68 F0EX68_9NEIS 24 340 SEQADV 5EC6 GLY A 1 UNP F0EX68 EXPRESSION TAG SEQADV 5EC6 PRO A 2 UNP F0EX68 EXPRESSION TAG SEQADV 5EC6 GLY A 3 UNP F0EX68 EXPRESSION TAG SEQADV 5EC6 GLY A 4 UNP F0EX68 EXPRESSION TAG SEQADV 5EC6 THR A 5 UNP F0EX68 EXPRESSION TAG SEQRES 1 A 322 GLY PRO GLY GLY THR ALA ILE ASN GLU PRO LEU THR ALA SEQRES 2 A 322 ALA PRO ILE PRO VAL LEU ARG ALA VAL ASP THR THR SER SEQRES 3 A 322 PRO ASN ILE VAL ALA ASP THR SER THR ASP ARG GLU GLN SEQRES 4 A 322 ARG THR PHE ALA THR GLN GLY GLY SER VAL LYS PRO PHE SEQRES 5 A 322 THR ILE THR LYS PRO SER PRO TYR ILE PRO GLY LEU MET SEQRES 6 A 322 LEU THR ASN GLN GLU ILE LEU TYR GLN ALA PRO ASP GLY SEQRES 7 A 322 LYS TYR TYR ASP PHE GLY THR TYR ASN THR LEU ILE MET SEQRES 8 A 322 PRO SER SER SER THR SER ALA ARG VAL LEU PRO ASN SER SEQRES 9 A 322 HIS PRO MET GLN PRO LEU ASP SER GLY GLY LYS MET ILE SEQRES 10 A 322 ALA CYS CYS THR ASN GLN THR SER THR GLY MET ASN ALA SEQRES 11 A 322 LEU ARG LEU LYS SER MET GLN PHE GLY ALA TRP MET SER SEQRES 12 A 322 PRO SER LYS THR VAL SER LEU PHE ALA GLY GLY THR PRO SEQRES 13 A 322 ALA PRO THR ASP THR LEU GLN GLY VAL ASP THR ALA GLY SEQRES 14 A 322 ARG PRO THR GLY LYS ALA THR TYR GLU VAL ILE GLY LEU SEQRES 15 A 322 ARG VAL LYS ASN ASP ARG ALA VAL THR SER SER TYR GLU SEQRES 16 A 322 THR ARG TYR SER PRO TYR ASN THR GLY GLN VAL VAL THR SEQRES 17 A 322 GLY SER PHE LEU THR VAL ASN PHE ASN THR GLY LYS LEU SEQRES 18 A 322 GLY GLY THR ILE VAL GLY ASN SER GLU PHE GLY ASP SER SEQRES 19 A 322 ILE GLU MET ARG ASP VAL ASN VAL ASN GLY ASN GLN PHE SEQRES 20 A 322 SER GLY THR ALA SER SER GLY GLY HIS THR GLY GLN VAL SEQRES 21 A 322 SER GLY GLY LEU PHE ALA LYS GLU GLU ARG PHE TYR SER SEQRES 22 A 322 GLY THR LEU GLU HIS PRO SER GLY GLY GLU ILE GLY GLY SEQRES 23 A 322 THR VAL ASN PHE GLY SER ASN SER PRO LEU ASN ALA SER SEQRES 24 A 322 PHE GLY GLY THR ARG ARG GLU TYR ASN ALA ALA ASP THR SEQRES 25 A 322 SER THR ASP THR SER HIS LEU VAL SER PRO HET GOL A 401 6 HET GOL A 402 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *325(H2 O) HELIX 1 AA1 SER A 34 GLU A 38 5 5 HELIX 2 AA2 MET A 128 ARG A 132 5 5 HELIX 3 AA3 PRO A 158 LEU A 162 5 5 HELIX 4 AA4 GLY A 164 GLY A 169 1 6 SHEET 1 AA1 4 ILE A 29 ALA A 31 0 SHEET 2 AA1 4 SER A 48 PRO A 57 -1 O THR A 53 N VAL A 30 SHEET 3 AA1 4 MET A 65 GLN A 74 -1 O GLN A 74 N SER A 48 SHEET 4 AA1 4 TYR A 80 TYR A 81 -1 O TYR A 81 N TYR A 73 SHEET 1 AA2 5 ARG A 40 ALA A 43 0 SHEET 2 AA2 5 VAL A 148 GLY A 154 -1 O ALA A 152 N PHE A 42 SHEET 3 AA2 5 MET A 136 MET A 142 -1 N TRP A 141 O SER A 149 SHEET 4 AA2 5 LYS A 115 ALA A 118 -1 N LYS A 115 O MET A 142 SHEET 5 AA2 5 GLN A 108 PRO A 109 -1 N GLN A 108 O MET A 116 SHEET 1 AA3 3 ARG A 99 VAL A 100 0 SHEET 2 AA3 3 GLU A 195 THR A 196 -1 O THR A 196 N ARG A 99 SHEET 3 AA3 3 VAL A 206 THR A 208 -1 O THR A 208 N GLU A 195 SHEET 1 AA411 SER A 104 PRO A 106 0 SHEET 2 AA411 ARG A 188 THR A 191 -1 O ALA A 189 N HIS A 105 SHEET 3 AA411 LYS A 174 LYS A 185 -1 N ARG A 183 O VAL A 190 SHEET 4 AA411 ALA A 298 ASN A 308 -1 O THR A 303 N GLU A 178 SHEET 5 AA411 GLU A 283 ASN A 289 -1 N VAL A 288 O ALA A 298 SHEET 6 AA411 HIS A 256 PHE A 265 -1 N GLN A 259 O ASN A 289 SHEET 7 AA411 GLN A 246 SER A 253 -1 N GLY A 249 O VAL A 260 SHEET 8 AA411 ILE A 235 ASN A 243 -1 N ASN A 243 O GLN A 246 SHEET 9 AA411 LYS A 220 ILE A 225 -1 N ILE A 225 O ILE A 235 SHEET 10 AA411 SER A 210 ASN A 215 -1 N ASN A 215 O LYS A 220 SHEET 11 AA411 LYS A 174 LYS A 185 -1 N TYR A 177 O LEU A 212 SHEET 1 AA5 2 GLU A 269 ARG A 270 0 SHEET 2 AA5 2 LEU A 276 HIS A 278 -1 O GLU A 277 N GLU A 269 SITE 1 AC1 8 LYS A 220 ASP A 239 ASN A 241 GLY A 254 SITE 2 AC1 8 GLY A 255 HIS A 256 HOH A 684 HOH A 702 SITE 1 AC2 8 ARG A 183 VAL A 184 LYS A 185 GLU A 230 SITE 2 AC2 8 PHE A 231 PRO A 295 LEU A 296 HOH A 516 CRYST1 102.470 102.470 77.210 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009759 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012952 0.00000