HEADER TRANSPORT PROTEIN 21-OCT-15 5EDL TITLE CRYSTAL STRUCTURE OF AN S-COMPONENT OF ECF TRANSPORTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HMP/THIAMINE PERMEASE PROTEIN YKOE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 3-199; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YKOE, BSU13230; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE TRANSPORT PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.JOSTS,H.TIDOW REVDAT 3 08-MAY-24 5EDL 1 HETSYN ATOM REVDAT 2 28-SEP-16 5EDL 1 REVDAT 1 17-AUG-16 5EDL 0 JRNL AUTH I.JOSTS,Y.ALMEIDA HERNANDEZ,A.ANDREEVA,H.TIDOW JRNL TITL CRYSTAL STRUCTURE OF A GROUP I ENERGY COUPLING FACTOR JRNL TITL 2 VITAMIN TRANSPORTER S COMPONENT IN COMPLEX WITH ITS COGNATE JRNL TITL 3 SUBSTRATE. JRNL REF CELL CHEM BIOL V. 23 827 2016 JRNL REFN ESSN 2451-9456 JRNL PMID 27447050 JRNL DOI 10.1016/J.CHEMBIOL.2016.06.008 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5903 - 3.7302 1.00 2706 143 0.2093 0.2174 REMARK 3 2 3.7302 - 2.9609 1.00 2565 143 0.1873 0.2049 REMARK 3 3 2.9609 - 2.5867 1.00 2543 127 0.1611 0.1912 REMARK 3 4 2.5867 - 2.3502 1.00 2499 140 0.1607 0.2058 REMARK 3 5 2.3502 - 2.1818 1.00 2499 140 0.1836 0.1948 REMARK 3 6 2.1818 - 2.0531 1.00 2481 129 0.2135 0.2458 REMARK 3 7 2.0531 - 1.9503 1.00 2492 140 0.2660 0.3454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1564 REMARK 3 ANGLE : 0.916 2109 REMARK 3 CHIRALITY : 0.036 247 REMARK 3 PLANARITY : 0.004 249 REMARK 3 DIHEDRAL : 12.674 558 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2385 24.5428 66.5156 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.2766 REMARK 3 T33: 0.3251 T12: 0.0482 REMARK 3 T13: -0.0328 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 4.6586 L22: 1.7114 REMARK 3 L33: 7.5678 L12: 0.6479 REMARK 3 L13: -3.8814 L23: -1.6910 REMARK 3 S TENSOR REMARK 3 S11: 0.1771 S12: 0.1366 S13: 0.4677 REMARK 3 S21: 0.0658 S22: 0.0127 S23: -0.0068 REMARK 3 S31: -0.4630 S32: -0.3914 S33: -0.3553 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2588 21.0423 67.4979 REMARK 3 T TENSOR REMARK 3 T11: 0.2726 T22: 0.2603 REMARK 3 T33: 0.2699 T12: -0.0085 REMARK 3 T13: -0.0074 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 4.5956 L22: 1.2319 REMARK 3 L33: 3.5291 L12: -1.0219 REMARK 3 L13: -3.8473 L23: 1.4258 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.2066 S13: 0.1310 REMARK 3 S21: -0.1340 S22: -0.0332 S23: -0.1016 REMARK 3 S31: 0.0619 S32: -0.2305 S33: -0.0620 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2915 15.6770 67.3299 REMARK 3 T TENSOR REMARK 3 T11: 0.2336 T22: 0.2943 REMARK 3 T33: 0.2576 T12: -0.0046 REMARK 3 T13: 0.0332 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.8769 L22: 3.1034 REMARK 3 L33: 2.3797 L12: -0.5511 REMARK 3 L13: 1.0727 L23: -0.9417 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: 0.1988 S13: -0.0190 REMARK 3 S21: -0.2279 S22: -0.0648 S23: 0.0832 REMARK 3 S31: 0.2805 S32: -0.2133 S33: -0.0523 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7529 12.0681 84.9152 REMARK 3 T TENSOR REMARK 3 T11: 0.3244 T22: 0.2623 REMARK 3 T33: 0.2450 T12: 0.0642 REMARK 3 T13: -0.0063 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 4.3371 L22: 4.5908 REMARK 3 L33: 7.1247 L12: 4.2621 REMARK 3 L13: 2.9945 L23: 4.1190 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: -0.6111 S13: 0.2745 REMARK 3 S21: 0.3556 S22: -0.0006 S23: -0.1947 REMARK 3 S31: 0.3872 S32: 0.5149 S33: 0.1388 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7129 16.7251 67.0187 REMARK 3 T TENSOR REMARK 3 T11: 0.2454 T22: 0.2779 REMARK 3 T33: 0.2979 T12: 0.0086 REMARK 3 T13: -0.0182 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.2286 L22: 2.7210 REMARK 3 L33: 3.6632 L12: -0.7456 REMARK 3 L13: -1.2733 L23: 1.1815 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0206 S13: 0.0610 REMARK 3 S21: -0.0948 S22: -0.0752 S23: -0.1003 REMARK 3 S31: -0.0698 S32: 0.1955 S33: 0.0583 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6073 28.9289 85.4921 REMARK 3 T TENSOR REMARK 3 T11: 0.5979 T22: 0.4295 REMARK 3 T33: 0.4951 T12: 0.1180 REMARK 3 T13: 0.0410 T23: -0.0856 REMARK 3 L TENSOR REMARK 3 L11: 6.3050 L22: 4.5232 REMARK 3 L33: 8.4470 L12: 4.0979 REMARK 3 L13: -5.1271 L23: -5.8047 REMARK 3 S TENSOR REMARK 3 S11: 0.4219 S12: -0.6234 S13: 0.6025 REMARK 3 S21: 1.4020 S22: -0.1885 S23: 1.6938 REMARK 3 S31: -0.8997 S32: -0.6490 S33: -0.0619 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0190 30.4146 96.7622 REMARK 3 T TENSOR REMARK 3 T11: 0.6596 T22: 0.5212 REMARK 3 T33: 0.4232 T12: 0.0368 REMARK 3 T13: -0.0224 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 5.3193 L22: 2.4752 REMARK 3 L33: 2.8797 L12: 3.5860 REMARK 3 L13: 3.7562 L23: 2.6530 REMARK 3 S TENSOR REMARK 3 S11: 0.3931 S12: -0.6048 S13: -0.4250 REMARK 3 S21: 1.3567 S22: -0.0662 S23: -0.3359 REMARK 3 S31: 0.9322 S32: -0.1780 S33: -0.4744 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18753 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1000, DISODIUM HYDROGEN PHOSPHATE, REMARK 280 CITRIC ACID, LITHIUM SULFATE, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 35.35650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 35.35650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 98.41950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 35.35650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 35.35650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 98.41950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 35.35650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 35.35650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 98.41950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 35.35650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 35.35650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 98.41950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 35.35650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 35.35650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 98.41950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 35.35650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 35.35650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 98.41950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 35.35650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 35.35650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 98.41950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.35650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 35.35650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 98.41950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 365 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 373 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 339 O HOH A 367 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 341 O HOH A 341 16555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 374 DISTANCE = 6.00 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MPG A 202 REMARK 610 MPG A 203 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VIB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 203 DBREF 5EDL A 3 199 UNP O34738 YKOE_BACSU 3 199 SEQRES 1 A 197 SER TRP LYS VAL LYS GLU ILE VAL ILE MET SER VAL ILE SEQRES 2 A 197 SER ILE VAL PHE ALA VAL VAL TYR LEU LEU PHE THR HIS SEQRES 3 A 197 PHE GLY ASN VAL LEU ALA GLY MET PHE GLY PRO ILE ALA SEQRES 4 A 197 TYR GLU PRO ILE TYR GLY ILE TRP PHE ILE VAL SER VAL SEQRES 5 A 197 ILE ALA ALA TYR MET ILE ARG LYS PRO GLY ALA ALA LEU SEQRES 6 A 197 VAL SER GLU ILE ILE ALA ALA LEU VAL GLU CYS LEU LEU SEQRES 7 A 197 GLY ASN PRO SER GLY PRO MET VAL ILE VAL ILE GLY ILE SEQRES 8 A 197 VAL GLN GLY LEU GLY ALA GLU ALA VAL PHE LEU ALA THR SEQRES 9 A 197 ARG TRP LYS ALA TYR SER LEU PRO VAL LEU MET LEU ALA SEQRES 10 A 197 GLY MET GLY SER SER VAL ALA SER PHE ILE TYR ASP LEU SEQRES 11 A 197 PHE VAL SER GLY TYR ALA ALA TYR SER PRO GLY TYR LEU SEQRES 12 A 197 LEU ILE MET LEU VAL ILE ARG LEU ILE SER GLY ALA LEU SEQRES 13 A 197 LEU ALA GLY LEU LEU GLY LYS ALA VAL SER ASP SER LEU SEQRES 14 A 197 ALA TYR THR GLY VAL LEU ASN GLY MET ALA LEU GLY LYS SEQRES 15 A 197 GLU LEU LYS LYS LYS ARG LYS ARG ALA SER GLU HIS ALA SEQRES 16 A 197 SER LEU HET VIB A 201 18 HET MPG A 202 53 HET MPG A 203 20 HETNAM VIB 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY- HETNAM 2 VIB ETHYL)-4-METHYL-THIAZOL-3-IUM HETNAM MPG [(Z)-OCTADEC-9-ENYL] (2R)-2,3-BIS(OXIDANYL)PROPANOATE HETSYN VIB THIAMIN; VITAMIN B1 FORMUL 2 VIB C12 H17 N4 O S 1+ FORMUL 3 MPG 2(C21 H40 O4) FORMUL 5 HOH *74(H2 O) HELIX 1 AA1 LYS A 5 GLY A 38 1 34 HELIX 2 AA2 PRO A 39 TRP A 49 5 11 HELIX 3 AA3 PHE A 50 ARG A 61 1 12 HELIX 4 AA4 GLY A 64 LEU A 80 1 17 HELIX 5 AA5 PRO A 86 THR A 106 1 21 HELIX 6 AA6 SER A 112 SER A 135 1 24 HELIX 7 AA7 GLY A 136 TYR A 140 5 5 HELIX 8 AA8 SER A 141 ALA A 160 1 20 HELIX 9 AA9 ALA A 160 TYR A 173 1 14 HELIX 10 AB1 MET A 180 GLU A 195 1 16 SITE 1 AC1 12 TYR A 23 THR A 27 GLY A 35 TYR A 42 SITE 2 AC1 12 TYR A 46 TRP A 49 GLU A 77 VAL A 88 SITE 3 AC1 12 GLN A 95 ASP A 131 SER A 135 ARG A 152 SITE 1 AC2 3 GLU A 100 ALA A 101 MPG A 203 SITE 1 AC3 4 ALA A 126 ILE A 129 VAL A 134 MPG A 202 CRYST1 70.713 70.713 196.839 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005080 0.00000