HEADER TRANSCRIPTION 22-OCT-15 5EE5 TITLE STRUCTURE OF HUMAN ARL1 IN COMPLEX WITH THE DCB DOMAIN OF BIG1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: BREFELDIN A-INHIBITED GEP 1,ADP-RIBOSYLATION FACTOR GUANINE COMPND 6 NUCLEOTIDE-EXCHANGE FACTOR 1,P200 ARF GUANINE NUCLEOTIDE EXCHANGE COMPND 7 FACTOR,P200 ARF-GEP1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARFGEF1, ARFGEP1, BIG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ARL1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ARF1-GEF ARL1-EFFECTOR TRANS-GOLGI DCB DOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.GALINDO,N.SOLER,S.MUNRO REVDAT 3 27-JUL-16 5EE5 1 JRNL REVDAT 2 13-JUL-16 5EE5 1 JRNL REVDAT 1 06-JUL-16 5EE5 0 JRNL AUTH A.GALINDO,N.SOLER,S.H.MCLAUGHLIN,M.YU,R.L.WILLIAMS,S.MUNRO JRNL TITL STRUCTURAL INSIGHTS INTO ARL1-MEDIATED TARGETING OF THE JRNL TITL 2 ARF-GEF BIG1 TO THE TRANS-GOLGI. JRNL REF CELL REP V. 16 839 2016 JRNL REFN ESSN 2211-1247 JRNL PMID 27373159 JRNL DOI 10.1016/J.CELREP.2016.06.022 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1810) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 35351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0717 - 5.3474 0.97 2594 120 0.1757 0.2251 REMARK 3 2 5.3474 - 4.2486 0.98 2591 128 0.1723 0.1857 REMARK 3 3 4.2486 - 3.7128 0.95 2529 118 0.1866 0.2228 REMARK 3 4 3.7128 - 3.3739 0.92 2446 135 0.2097 0.2513 REMARK 3 5 3.3739 - 3.1324 0.99 2612 145 0.2522 0.2945 REMARK 3 6 3.1324 - 2.9479 1.00 2645 142 0.2471 0.3043 REMARK 3 7 2.9479 - 2.8004 1.00 2652 118 0.2498 0.3081 REMARK 3 8 2.8004 - 2.6786 0.99 2621 160 0.2573 0.2818 REMARK 3 9 2.6786 - 2.5755 0.95 2553 117 0.2952 0.3070 REMARK 3 10 2.5755 - 2.4867 0.99 2637 148 0.3022 0.3673 REMARK 3 11 2.4867 - 2.4090 0.98 2571 152 0.3286 0.3900 REMARK 3 12 2.4090 - 2.3402 0.99 2639 140 0.3427 0.3935 REMARK 3 13 2.3402 - 2.2786 0.94 2511 127 0.3598 0.3986 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2981 REMARK 3 ANGLE : 1.158 4020 REMARK 3 CHIRALITY : 0.064 469 REMARK 3 PLANARITY : 0.005 499 REMARK 3 DIHEDRAL : 17.994 1132 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000204321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.279 REMARK 200 RESOLUTION RANGE LOW (A) : 29.069 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8K/PEG 1K 10% SODIUM ACETATE 0.1 REMARK 280 -0.2MM TRIS PH8.5 GLACIAL ACETIC 0.100MM, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.65079 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.36350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.14478 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.65079 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.36350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 48.14478 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -187.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 LYS A 71 REMARK 465 THR A 72 REMARK 465 ASN A 73 REMARK 465 GLN A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 HIS B 13 REMARK 465 MET B 14 REMARK 465 THR B 15 REMARK 465 ARG B 16 REMARK 465 GLN B 181 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 8 O ILE A 75 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 115 34.68 -94.72 REMARK 500 SER A 119 -72.10 -71.81 REMARK 500 GLN B 132 4.00 -69.67 REMARK 500 ALA B 147 7.60 -67.60 REMARK 500 LYS B 162 -152.42 -114.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 47 OE2 REMARK 620 2 HOH A 408 O 63.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 31 OG1 REMARK 620 2 THR B 48 OG1 79.4 REMARK 620 3 GTP B 201 O1G 117.1 72.8 REMARK 620 4 GTP B 201 O1B 77.4 119.3 69.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 31 OG1 REMARK 620 2 THR B 48 OG1 69.7 REMARK 620 3 GTP B 201 O1G 115.7 68.9 REMARK 620 4 GTP B 201 O1B 76.9 111.2 75.1 REMARK 620 5 GTP B 201 O2A 116.1 170.5 112.7 78.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD2 REMARK 620 2 ASP B 96 OD2 107.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 216 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DCN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE ARFAPTIN2 BAR DOMAIN IN COMPLEX REMARK 900 WITH ARL1 REMARK 900 RELATED ID: 1UPT RELATED DB: PDB REMARK 900 STRUCTURE OF A COMPLEX OF THE GOLGIN-245 GRIP DOMAIN WITH ARL1 DBREF 5EE5 A 1 229 UNP Q9Y6D6 BIG1_HUMAN 1 229 DBREF 5EE5 B 15 181 UNP P40616 ARL1_HUMAN 15 181 SEQADV 5EE5 GLY A -2 UNP Q9Y6D6 EXPRESSION TAG SEQADV 5EE5 SER A -1 UNP Q9Y6D6 EXPRESSION TAG SEQADV 5EE5 HIS A 0 UNP Q9Y6D6 EXPRESSION TAG SEQADV 5EE5 A UNP Q9Y6D6 SER 52 DELETION SEQADV 5EE5 A UNP Q9Y6D6 PRO 53 DELETION SEQADV 5EE5 A UNP Q9Y6D6 PRO 54 DELETION SEQADV 5EE5 A UNP Q9Y6D6 HIS 55 DELETION SEQADV 5EE5 A UNP Q9Y6D6 GLY 56 DELETION SEQADV 5EE5 A UNP Q9Y6D6 GLU 57 DELETION SEQADV 5EE5 A UNP Q9Y6D6 ALA 58 DELETION SEQADV 5EE5 A UNP Q9Y6D6 LYS 59 DELETION SEQADV 5EE5 A UNP Q9Y6D6 ALA 60 DELETION SEQADV 5EE5 A UNP Q9Y6D6 GLY 61 DELETION SEQADV 5EE5 A UNP Q9Y6D6 SER 62 DELETION SEQADV 5EE5 A UNP Q9Y6D6 SER 63 DELETION SEQADV 5EE5 A UNP Q9Y6D6 THR 64 DELETION SEQADV 5EE5 A UNP Q9Y6D6 LEU 65 DELETION SEQADV 5EE5 A UNP Q9Y6D6 PRO 66 DELETION SEQADV 5EE5 A UNP Q9Y6D6 PRO 67 DELETION SEQADV 5EE5 A UNP Q9Y6D6 VAL 68 DELETION SEQADV 5EE5 A UNP Q9Y6D6 LYS 69 DELETION SEQADV 5EE5 A UNP Q9Y6D6 SER 70 DELETION SEQADV 5EE5 GLY B 11 UNP P40616 EXPRESSION TAG SEQADV 5EE5 SER B 12 UNP P40616 EXPRESSION TAG SEQADV 5EE5 HIS B 13 UNP P40616 EXPRESSION TAG SEQADV 5EE5 MET B 14 UNP P40616 EXPRESSION TAG SEQADV 5EE5 LEU B 71 UNP P40616 GLN 71 CONFLICT SEQRES 1 A 213 GLY SER HIS MET TYR GLU GLY LYS LYS THR LYS ASN MET SEQRES 2 A 213 PHE LEU THR ARG ALA LEU GLU LYS ILE LEU ALA ASP LYS SEQRES 3 A 213 GLU VAL LYS LYS ALA HIS HIS SER GLN LEU ARG LYS ALA SEQRES 4 A 213 CYS GLU VAL ALA LEU GLU GLU ILE LYS ALA GLU THR GLU SEQRES 5 A 213 LYS GLN LYS THR ASN PHE ILE GLU ALA ASP LYS TYR PHE SEQRES 6 A 213 LEU PRO PHE GLU LEU ALA CYS GLN SER LYS CYS PRO ARG SEQRES 7 A 213 ILE VAL SER THR SER LEU ASP CYS LEU GLN LYS LEU ILE SEQRES 8 A 213 ALA TYR GLY HIS LEU THR GLY ASN ALA PRO ASP SER THR SEQRES 9 A 213 THR PRO GLY LYS LYS LEU ILE ASP ARG ILE ILE GLU THR SEQRES 10 A 213 ILE CYS GLY CYS PHE GLN GLY PRO GLN THR ASP GLU GLY SEQRES 11 A 213 VAL GLN LEU GLN ILE ILE LYS ALA LEU LEU THR ALA VAL SEQRES 12 A 213 THR SER GLN HIS ILE GLU ILE HIS GLU GLY THR VAL LEU SEQRES 13 A 213 GLN ALA VAL ARG THR CYS TYR ASN ILE TYR LEU ALA SER SEQRES 14 A 213 LYS ASN LEU ILE ASN GLN THR THR ALA ALY ALA THR LEU SEQRES 15 A 213 THR GLN MET LEU ASN VAL ILE PHE ALA ARG MET GLU ASN SEQRES 16 A 213 GLN ALA LEU GLN GLU ALA LYS GLN MET GLU LYS GLU ARG SEQRES 17 A 213 HIS ARG GLN HIS HIS SEQRES 1 B 171 GLY SER HIS MET THR ARG GLU MET ARG ILE LEU ILE LEU SEQRES 2 B 171 GLY LEU ASP GLY ALA GLY LYS THR THR ILE LEU TYR ARG SEQRES 3 B 171 LEU GLN VAL GLY GLU VAL VAL THR THR ILE PRO THR ILE SEQRES 4 B 171 GLY PHE ASN VAL GLU THR VAL THR TYR LYS ASN LEU LYS SEQRES 5 B 171 PHE GLN VAL TRP ASP LEU GLY GLY LEU THR SER ILE ARG SEQRES 6 B 171 PRO TYR TRP ARG CYS TYR TYR SER ASN THR ASP ALA VAL SEQRES 7 B 171 ILE TYR VAL VAL ASP SER CYS ASP ARG ASP ARG ILE GLY SEQRES 8 B 171 ILE SER LYS SER GLU LEU VAL ALA MET LEU GLU GLU GLU SEQRES 9 B 171 GLU LEU ARG LYS ALA ILE LEU VAL VAL PHE ALA ASN LYS SEQRES 10 B 171 GLN ASP MET GLU GLN ALA MET THR SER SER GLU MET ALA SEQRES 11 B 171 ASN SER LEU GLY LEU PRO ALA LEU LYS ASP ARG LYS TRP SEQRES 12 B 171 GLN ILE PHE LYS THR SER ALA THR LYS GLY THR GLY LEU SEQRES 13 B 171 ASP GLU ALA MET GLU TRP LEU VAL GLU THR LEU LYS SER SEQRES 14 B 171 ARG GLN MODRES 5EE5 ALY A 195 LYS MODIFIED RESIDUE HET ALY A 195 12 HET NA A 301 1 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HET GOL A 307 6 HET CL A 308 1 HET CL A 309 1 HET CL A 310 1 HET CL A 311 1 HET CL A 312 1 HET CL A 313 1 HET GTP B 201 32 HET MG B 202 1 HET MG B 203 1 HET MG B 204 1 HET MG B 205 1 HET NA B 206 1 HET NA B 207 1 HET NA B 208 1 HET NA B 209 1 HET NA B 210 1 HET NA B 211 1 HET NA B 212 1 HET NA B 213 1 HET GOL B 214 6 HET CL B 215 1 HET ACT B 216 4 HETNAM ALY N(6)-ACETYLLYSINE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 ALY C8 H16 N2 O3 FORMUL 3 NA 14(NA 1+) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 10 CL 7(CL 1-) FORMUL 16 GTP C10 H16 N5 O14 P3 FORMUL 17 MG 4(MG 2+) FORMUL 31 ACT C2 H3 O2 1- FORMUL 32 HOH *41(H2 O) HELIX 1 AA1 LYS A 6 ASP A 22 1 17 HELIX 2 AA2 LYS A 23 LYS A 26 5 4 HELIX 3 AA3 LYS A 27 HIS A 29 5 3 HELIX 4 AA4 HIS A 30 GLU A 49 1 20 HELIX 5 AA5 GLU A 76 LYS A 79 5 4 HELIX 6 AA6 TYR A 80 GLN A 89 1 10 HELIX 7 AA7 CYS A 92 TYR A 109 1 18 HELIX 8 AA8 LYS A 125 GLY A 136 1 12 HELIX 9 AA9 ASP A 144 SER A 161 1 18 HELIX 10 AB1 HIS A 167 SER A 185 1 19 HELIX 11 AB2 ASN A 187 HIS A 225 1 39 HELIX 12 AB3 GLY B 29 GLY B 40 1 12 HELIX 13 AB4 ILE B 74 TYR B 82 5 9 HELIX 14 AB5 ARG B 99 LEU B 111 1 13 HELIX 15 AB6 GLU B 112 ARG B 117 5 6 HELIX 16 AB7 THR B 135 LEU B 143 1 9 HELIX 17 AB8 GLY B 165 ARG B 180 1 16 SHEET 1 AA1 6 ASN B 52 TYR B 58 0 SHEET 2 AA1 6 LEU B 61 ASP B 67 -1 O ASP B 67 N ASN B 52 SHEET 3 AA1 6 MET B 18 LEU B 23 1 N ILE B 20 O TRP B 66 SHEET 4 AA1 6 ALA B 87 ASP B 93 1 O ILE B 89 N LEU B 21 SHEET 5 AA1 6 ILE B 120 ASN B 126 1 O ILE B 120 N VAL B 88 SHEET 6 AA1 6 TRP B 153 LYS B 157 1 O PHE B 156 N VAL B 123 LINK OE2 GLU A 47 NA NA A 304 1555 1555 2.81 LINK C ALA A 194 N ALY A 195 1555 1555 1.32 LINK C ALY A 195 N ALA A 196 1555 1555 1.32 LINK OG1 THR B 31 MG MG B 202 1555 1555 2.25 LINK OG1 THR B 31 MG MG B 205 1555 1555 2.42 LINK OG1 THR B 48 MG MG B 202 1555 1555 2.16 LINK OG1 THR B 48 MG MG B 205 1555 1555 2.52 LINK O LEU B 61 MG MG B 204 1555 1555 2.20 LINK OD2 ASP B 93 MG MG B 203 1555 1555 2.82 LINK O CYS B 95 NA NA B 212 1555 1555 3.13 LINK OD2 ASP B 96 MG MG B 203 1555 1555 2.52 LINK OD2 ASP B 150 NA NA B 207 1555 1555 2.27 LINK OE2 GLU B 171 NA NA B 213 1555 1555 2.39 LINK NA NA A 304 O HOH A 408 1555 1555 2.34 LINK O1G GTP B 201 MG MG B 202 1555 1555 2.40 LINK O1G GTP B 201 MG MG B 205 1555 1555 2.27 LINK O1B GTP B 201 MG MG B 202 1555 1555 2.32 LINK O1B GTP B 201 MG MG B 205 1555 1555 2.17 LINK O2A GTP B 201 MG MG B 205 1555 1555 2.86 CISPEP 1 PRO A 122 GLY A 123 0 9.09 CISPEP 2 LYS B 59 ASN B 60 0 -2.03 CISPEP 3 LYS B 149 ASP B 150 0 -1.41 SITE 1 AC1 3 ASN A 187 ASN A 190 GLN B 64 SITE 1 AC2 3 GLU A 47 GLN A 51 HOH A 408 SITE 1 AC3 3 TYR A 182 GLN A 191 CL A 313 SITE 1 AC4 4 ARG A 176 ASN A 180 LEU A 202 ASN A 203 SITE 1 AC5 6 LEU A 100 ASP A 101 GLN A 104 GLN A 150 SITE 2 AC5 6 LYS A 153 ALA A 154 SITE 1 AC6 1 GOL A 307 SITE 1 AC7 22 ASP B 26 GLY B 27 ALA B 28 GLY B 29 SITE 2 AC7 22 LYS B 30 THR B 31 THR B 32 THR B 45 SITE 3 AC7 22 THR B 48 GLY B 69 GLY B 70 ASN B 126 SITE 4 AC7 22 LYS B 127 ASP B 129 MET B 130 SER B 159 SITE 5 AC7 22 ALA B 160 THR B 161 MG B 202 MG B 205 SITE 6 AC7 22 HOH B 305 HOH B 308 SITE 1 AC8 5 THR B 31 THR B 48 ASP B 67 GTP B 201 SITE 2 AC8 5 MG B 205 SITE 1 AC9 3 ASP B 93 ASP B 96 ARG B 99 SITE 1 AD1 3 THR B 57 TYR B 58 LEU B 61 SITE 1 AD2 5 THR B 31 ILE B 46 THR B 48 GTP B 201 SITE 2 AD2 5 MG B 202 SITE 1 AD3 1 GLU B 112 SITE 1 AD4 1 ASP B 150 SITE 1 AD5 1 VAL B 39 SITE 1 AD6 1 CYS B 95 SITE 1 AD7 1 GLU B 171 SITE 1 AD8 3 ARG B 75 PRO B 76 GLU B 106 SITE 1 AD9 2 ALA B 119 LYS B 152 SITE 1 AE1 1 TYR B 77 CRYST1 84.166 50.727 103.837 90.00 111.98 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011881 0.000000 0.004795 0.00000 SCALE2 0.000000 0.019713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010385 0.00000