HEADER HYDROLASE/HYDROLASE INHIBITOR 22-OCT-15 5EEC
TITLE CRYSTAL STRUCTURE OF KPC-2 BETA-LACTAMASE IN COMPLEX WITH THE S02030
TITLE 2 BORONIC ACID INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC-1;
COMPND 5 EC: 3.5.2.6;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 573;
SOURCE 4 GENE: BLA, KPC, KPC1;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TRANSITION STATE INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR N.Q.NGUYEN,F.VAN DEN AKKER
REVDAT 3 20-NOV-24 5EEC 1 JRNL REMARK
REVDAT 2 09-MAR-16 5EEC 1 JRNL
REVDAT 1 03-FEB-16 5EEC 0
JRNL AUTH N.Q.NGUYEN,N.P.KRISHNAN,L.J.ROJAS,F.PRATI,E.CASELLI,
JRNL AUTH 2 C.ROMAGNOLI,R.A.BONOMO,F.VAN DEN AKKER
JRNL TITL CRYSTAL STRUCTURES OF KPC-2 AND SHV-1 BETA-LACTAMASES IN
JRNL TITL 2 COMPLEX WITH THE BORONIC ACID TRANSITION STATE ANALOG
JRNL TITL 3 S02030.
JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 60 1760 2016
JRNL REFN ESSN 1098-6596
JRNL PMID 26729491
JRNL DOI 10.1128/AAC.02643-15
REMARK 2
REMARK 2 RESOLUTION. 1.87 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.7.0029
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.88
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4
REMARK 3 NUMBER OF REFLECTIONS : 37196
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.168
REMARK 3 R VALUE (WORKING SET) : 0.166
REMARK 3 FREE R VALUE : 0.206
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1959
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2437
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.90
REMARK 3 BIN R VALUE (WORKING SET) : 0.2360
REMARK 3 BIN FREE R VALUE SET COUNT : 122
REMARK 3 BIN FREE R VALUE : 0.3020
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3958
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 74
REMARK 3 SOLVENT ATOMS : 419
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.04
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.155
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.211
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4184 ; 0.012 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 3952 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5701 ; 1.718 ; 1.984
REMARK 3 BOND ANGLES OTHERS (DEGREES): 9057 ; 1.362 ; 3.001
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 535 ; 6.262 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;36.029 ;23.494
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;14.378 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;11.988 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.083 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4781 ; 0.008 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 940 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4
REMARK 4 5EEC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-15.
REMARK 100 THE DEPOSITION ID IS D_1000214780.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-OCT-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.542
REMARK 200 MONOCHROMATOR : CU FILTER
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39177
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7
REMARK 200 DATA REDUNDANCY : 2.900
REMARK 200 R MERGE (I) : 0.10700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92
REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2
REMARK 200 DATA REDUNDANCY IN SHELL : 2.30
REMARK 200 R MERGE FOR SHELL (I) : 0.39300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.20
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 0.2 M LITHIUM SULFATE,
REMARK 280 AND 0.1 M SODIUM ACETATE (PH 4.5) AND 10:1 MOLAR RATIO WITH
REMARK 280 S02030 INHIBITOR, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.94150
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 VAL A 292
REMARK 465 ASN A 293
REMARK 465 GLY A 294
REMARK 465 GLN A 295
REMARK 465 VAL B 292
REMARK 465 ASN B 293
REMARK 465 GLY B 294
REMARK 465 GLN B 295
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OG SER B 109 OD2 ASP B 131 2.16
REMARK 500 OG SER B 70 O2 ZXM B 301 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 VAL A 57 C SER A 59 N 0.243
REMARK 500 VAL A 57 C SER A 59 N 0.193
REMARK 500 PRO A 252 C THR A 254 N 0.243
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 PRO A 252 O - C - N ANGL. DEV. = -16.3 DEGREES
REMARK 500 LYS A 273 CD - CE - NZ ANGL. DEV. = -14.9 DEGREES
REMARK 500 ARG B 204 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES
REMARK 500 ARG B 204 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES
REMARK 500 PRO B 252 O - C - N ANGL. DEV. = -10.2 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TYR A 60 111.73 -161.66
REMARK 500 CYS A 69 -137.93 46.51
REMARK 500 ARG A 220 -123.62 -119.85
REMARK 500 CYS B 69 -141.43 52.75
REMARK 500 ARG B 220 -117.28 -114.75
REMARK 500 THR B 254 108.23 -27.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 PRO A 252 22.54
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 603 DISTANCE = 5.94 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZXM A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5EE8 RELATED DB: PDB
DBREF 5EEC A 25 295 UNP Q9F663 BLKPC_KLEPN 25 293
DBREF 5EEC B 25 295 UNP Q9F663 BLKPC_KLEPN 25 293
SEQRES 1 A 269 LEU THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU
SEQRES 2 A 269 GLN ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP
SEQRES 3 A 269 THR GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU
SEQRES 4 A 269 ARG PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA
SEQRES 5 A 269 ALA ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU
SEQRES 6 A 269 LEU ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL
SEQRES 7 A 269 PRO TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY
SEQRES 8 A 269 MET THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR
SEQRES 9 A 269 SER ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU
SEQRES 10 A 269 GLY GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE
SEQRES 11 A 269 GLY ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU
SEQRES 12 A 269 LEU ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER
SEQRES 13 A 269 SER PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR
SEQRES 14 A 269 LEU GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE
SEQRES 15 A 269 VAL ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG
SEQRES 16 A 269 ILE ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP
SEQRES 17 A 269 LYS THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP
SEQRES 18 A 269 TYR ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL
SEQRES 19 A 269 LEU ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS
SEQRES 20 A 269 HIS SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA
SEQRES 21 A 269 LEU GLU GLY LEU GLY VAL ASN GLY GLN
SEQRES 1 B 269 LEU THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU
SEQRES 2 B 269 GLN ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP
SEQRES 3 B 269 THR GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU
SEQRES 4 B 269 ARG PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA
SEQRES 5 B 269 ALA ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU
SEQRES 6 B 269 LEU ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL
SEQRES 7 B 269 PRO TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY
SEQRES 8 B 269 MET THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR
SEQRES 9 B 269 SER ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU
SEQRES 10 B 269 GLY GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE
SEQRES 11 B 269 GLY ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU
SEQRES 12 B 269 LEU ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER
SEQRES 13 B 269 SER PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR
SEQRES 14 B 269 LEU GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE
SEQRES 15 B 269 VAL ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG
SEQRES 16 B 269 ILE ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP
SEQRES 17 B 269 LYS THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP
SEQRES 18 B 269 TYR ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL
SEQRES 19 B 269 LEU ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS
SEQRES 20 B 269 HIS SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA
SEQRES 21 B 269 LEU GLU GLY LEU GLY VAL ASN GLY GLN
HET ZXM A 301 31
HET SO4 A 302 5
HET SO4 A 303 5
HET SO4 A 304 5
HET ZXM B 301 22
HET SO4 B 302 5
HET SO4 B 303 5
HET SO4 B 304 5
HETNAM ZXM 1-{(2R)-2-(DIHYDROXYBORANYL)-2-[(THIOPHEN-2-YLACETYL)
HETNAM 2 ZXM AMINO]ETHYL}-1H-1,2,3-TRIAZOLE-4-CARBOXYLIC ACID
HETNAM SO4 SULFATE ION
FORMUL 3 ZXM 2(C11 H13 B N4 O5 S)
FORMUL 4 SO4 6(O4 S 2-)
FORMUL 11 HOH *419(H2 O)
HELIX 1 AA1 VAL A 29 GLY A 41 1 13
HELIX 2 AA2 SER A 71 GLN A 85 1 15
HELIX 3 AA3 GLY A 98 LEU A 102 5 5
HELIX 4 AA4 SER A 106 TYR A 112 1 7
HELIX 5 AA5 VAL A 119 SER A 130 1 12
HELIX 6 AA6 ASP A 131 LEU A 142 1 12
HELIX 7 AA7 GLY A 143 ILE A 155 1 13
HELIX 8 AA8 LEU A 167 SER A 171 5 5
HELIX 9 AA9 SER A 182 LEU A 195 1 14
HELIX 10 AB1 ALA A 200 GLY A 213 1 14
HELIX 11 AB2 ARG A 220 VAL A 225 5 6
HELIX 12 AB3 SER A 275 LEU A 290 1 16
HELIX 13 AB4 VAL B 29 GLY B 41 1 13
HELIX 14 AB5 SER B 71 GLN B 85 1 15
HELIX 15 AB6 GLY B 98 LEU B 102 5 5
HELIX 16 AB7 ILE B 108 LEU B 113 5 6
HELIX 17 AB8 VAL B 119 TYR B 129 1 11
HELIX 18 AB9 ASP B 131 GLY B 143 1 13
HELIX 19 AC1 GLY B 143 ILE B 155 1 13
HELIX 20 AC2 LEU B 167 SER B 171 5 5
HELIX 21 AC3 SER B 182 LEU B 195 1 14
HELIX 22 AC4 ALA B 200 GLY B 213 1 14
HELIX 23 AC5 ARG B 220 VAL B 225 1 6
HELIX 24 AC6 SER B 275 LEU B 290 1 16
SHEET 1 AA1 5 THR A 56 TYR A 60 0
SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60
SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O TYR A 264 N GLY A 45
SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N VAL A 250 O ILE A 259
SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N ALA A 230 O TRP A 251
SHEET 1 AA2 2 PHE A 66 PRO A 67 0
SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66
SHEET 1 AA3 2 PRO A 94 ILE A 95 0
SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95
SHEET 1 AA4 5 THR B 56 TYR B 60 0
SHEET 2 AA4 5 SER B 43 ASP B 50 -1 N VAL B 46 O TYR B 60
SHEET 3 AA4 5 ILE B 259 ARG B 266 -1 O TYR B 264 N GLY B 45
SHEET 4 AA4 5 ALA B 244 TRP B 251 -1 N VAL B 250 O ILE B 259
SHEET 5 AA4 5 ALA B 230 THR B 237 -1 N GLY B 236 O ASN B 245
SHEET 1 AA5 2 PHE B 66 PRO B 67 0
SHEET 2 AA5 2 THR B 180 SER B 181 -1 O SER B 181 N PHE B 66
SHEET 1 AA6 2 PRO B 94 ILE B 95 0
SHEET 2 AA6 2 MET B 117 THR B 118 -1 O MET B 117 N ILE B 95
SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.05
SSBOND 2 CYS B 69 CYS B 238 1555 1555 2.04
LINK OG SER A 70 B1 ZXM A 301 1555 1555 1.54
LINK OG SER B 70 B1 ZXM B 301 1555 1555 1.54
LINK C19 ZXM B 301 O1 SO4 B 302 1555 1555 1.24
LINK C19 ZXM B 301 O2 SO4 B 302 1555 1555 1.31
LINK C20 ZXM B 301 O1 SO4 B 302 1555 1555 1.49
LINK C20 ZXM B 301 S SO4 B 302 1555 1555 1.95
LINK C21 ZXM B 301 O3 SO4 B 302 1555 1555 1.43
LINK C21 ZXM B 301 O4 SO4 B 302 1555 1555 1.27
LINK O22 ZXM B 301 S SO4 B 302 1555 1555 1.59
CISPEP 1 GLU A 166 LEU A 167 0 6.62
CISPEP 2 GLU B 166 LEU B 167 0 12.44
CISPEP 3 LEU B 290 GLY B 291 0 -9.80
SITE 1 AC1 17 CYS A 69 SER A 70 TRP A 105 SER A 130
SITE 2 AC1 17 ASN A 132 GLU A 166 LEU A 167 LEU A 169
SITE 3 AC1 17 ASN A 170 THR A 235 THR A 237 CYS A 238
SITE 4 AC1 17 GLY A 239 SO4 A 304 HOH A 401 HOH A 411
SITE 5 AC1 17 LYS B 140
SITE 1 AC2 6 SER A 59 ARG A 61 ALA A 62 GLU A 63
SITE 2 AC2 6 HOH A 408 HOH A 516
SITE 1 AC3 5 SER A 275 GLU A 276 ALA A 277 HOH A 508
SITE 2 AC3 5 HOH A 515
SITE 1 AC4 5 ARG A 220 HIS A 274 GLU A 276 ZXM A 301
SITE 2 AC4 5 HOH A 411
SITE 1 AC5 6 SER B 275 GLU B 276 ALA B 277 HOH B 403
SITE 2 AC5 6 HOH B 432 HOH B 486
SITE 1 AC6 7 SER B 43 ARG B 61 HOH B 405 HOH B 423
SITE 2 AC6 7 HOH B 479 HOH B 509 HOH B 516
CRYST1 51.853 77.883 64.773 90.00 108.67 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019285 0.000000 0.006517 0.00000
SCALE2 0.000000 0.012840 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016296 0.00000