HEADER TRANSFERASE 28-OCT-15 5EHI TITLE DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND TITLE 2 MOLECULE BF287 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS5 METHYLTRANSFERASE DENGUE VIRUS; COMPND 3 CHAIN: A, C; COMPND 4 EC: 3.4.21.91,3.6.1.15,3.6.4.13,2.1.1.56,2.1.1.57,2.7.7.48; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS TYPE 3 (STRAIN SOURCE 3 PHILIPPINES/H87/1956); SOURCE 4 ORGANISM_COMMON: DENV-3; SOURCE 5 ORGANISM_TAXID: 408870; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCOX20A KEYWDS TRANSFERASE, DENGUE VIRUS, NS5 METHYLTRANSFERASE, FRAGMENT-BASED DRUG KEYWDS 2 DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR K.BARRAL,G.BRICOGNE,A.SHARFF REVDAT 3 10-JAN-24 5EHI 1 REMARK ATOM REVDAT 2 06-SEP-17 5EHI 1 REMARK REVDAT 1 26-OCT-16 5EHI 0 JRNL AUTH F.BENMANSOUR,I.TRIST,B.COUTARD,E.DECROLY,G.QUERAT, JRNL AUTH 2 A.BRANCALE,K.BARRAL JRNL TITL DISCOVERY OF NOVEL DENGUE VIRUS NS5 METHYLTRANSFERASE JRNL TITL 2 NON-NUCLEOSIDE INHIBITORS BY FRAGMENT-BASED DRUG DESIGN. JRNL REF EUR.J.MED.CHEM. V. 125 865 2016 JRNL REFN ISSN 0223-5234 JRNL PMID 27750202 JRNL DOI 10.1016/J.EJMECH.2016.10.007 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 141255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 7044 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.76 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 9429 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2158 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8996 REMARK 3 BIN R VALUE (WORKING SET) : 0.2146 REMARK 3 BIN FREE R VALUE : 0.2419 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.59 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 433 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 872 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53700 REMARK 3 B22 (A**2) : -0.78360 REMARK 3 B33 (A**2) : 0.24660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.170 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.058 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.058 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.052 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.054 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4609 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6270 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1716 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 101 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 761 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4609 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 575 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6287 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.24 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 40.1844 41.9488 -2.1077 REMARK 3 T TENSOR REMARK 3 T11: -0.0456 T22: -0.0007 REMARK 3 T33: -0.0274 T12: 0.0029 REMARK 3 T13: -0.0005 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.3771 L22: 0.3515 REMARK 3 L33: 0.4868 L12: 0.0227 REMARK 3 L13: 0.0360 L23: 0.1174 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0059 S13: -0.0151 REMARK 3 S21: 0.0058 S22: -0.0009 S23: 0.0069 REMARK 3 S31: 0.0100 S32: 0.0070 S33: -0.0046 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 23.5298 23.7915 -11.1650 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: -0.0003 REMARK 3 T33: -0.0105 T12: -0.0193 REMARK 3 T13: -0.0136 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.4531 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.3807 REMARK 3 L13: 0.2170 L23: 0.3080 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0265 S13: -0.0072 REMARK 3 S21: -0.0256 S22: 0.0020 S23: 0.0135 REMARK 3 S31: 0.0557 S32: 0.0108 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.1940 13.4528 -11.4760 REMARK 3 T TENSOR REMARK 3 T11: -0.0195 T22: -0.0345 REMARK 3 T33: -0.0432 T12: -0.0186 REMARK 3 T13: -0.0015 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.4707 L22: 0.4568 REMARK 3 L33: 0.9551 L12: -0.0001 REMARK 3 L13: 0.1493 L23: -0.0714 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: -0.0497 S13: -0.0240 REMARK 3 S21: 0.0108 S22: 0.0054 S23: 0.0052 REMARK 3 S31: 0.0801 S32: -0.0646 S33: -0.0276 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EHI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142973 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.302 REMARK 200 RESOLUTION RANGE LOW (A) : 57.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : 0.14500 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 1.10200 REMARK 200 R SYM FOR SHELL (I) : 1.10200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3P97 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8000 100MM TRIS 200MM NACL REMARK 280 20MM TRISODIUM CITRATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.44750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.78300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.44750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.78300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C4195 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 HIS A 263 REMARK 465 VAL A 264 REMARK 465 ASN A 265 REMARK 465 ALA A 266 REMARK 465 GLU A 267 REMARK 465 PRO A 268 REMARK 465 GLU A 269 REMARK 465 THR A 270 REMARK 465 PRO A 271 REMARK 465 ASN A 272 REMARK 465 MET A 273 REMARK 465 ASP A 274 REMARK 465 VAL A 275 REMARK 465 ILE A 276 REMARK 465 GLY C 1 REMARK 465 THR C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 GLN C 5 REMARK 465 GLY C 6 REMARK 465 HIS C 263 REMARK 465 VAL C 264 REMARK 465 ASN C 265 REMARK 465 ALA C 266 REMARK 465 GLU C 267 REMARK 465 PRO C 268 REMARK 465 GLU C 269 REMARK 465 THR C 270 REMARK 465 PRO C 271 REMARK 465 ASN C 272 REMARK 465 MET C 273 REMARK 465 ASP C 274 REMARK 465 VAL C 275 REMARK 465 ILE C 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CD OE1 OE2 REMARK 470 LYS A 12 NZ REMARK 470 LYS A 15 NZ REMARK 470 LYS A 46 CE NZ REMARK 470 LYS A 95 CD CE REMARK 470 LYS A 139 CE NZ REMARK 470 ARG A 247 NE CZ NH1 NH2 REMARK 470 LYS C 15 CE NZ REMARK 470 ARG C 22 CG CD NE REMARK 470 LYS C 23 CB CG CD CE NZ REMARK 470 LYS C 139 CD CE NZ REMARK 470 LYS C 173 CE NZ REMARK 470 ARG C 247 CD NE CZ NH1 NH2 REMARK 470 ARG C 248 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -46.96 68.66 REMARK 500 HIS C 52 -46.50 68.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A4552 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A4553 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A4554 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A4555 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A4556 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A4557 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A4558 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A4559 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A4560 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A4561 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH A4562 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A4563 DISTANCE = 8.53 ANGSTROMS REMARK 525 HOH A4564 DISTANCE = 9.66 ANGSTROMS REMARK 525 HOH A4565 DISTANCE = 9.86 ANGSTROMS REMARK 525 HOH A4566 DISTANCE = 10.00 ANGSTROMS REMARK 525 HOH C4503 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH C4504 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH C4505 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH C4506 DISTANCE = 11.76 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5O3 A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM C 4000 DBREF 5EHI A 1 256 UNP P27915 POLG_DEN3P 2491 2746 DBREF 5EHI C 1 256 UNP P27915 POLG_DEN3P 2491 2746 SEQADV 5EHI THR A 50 UNP P27915 ILE 2540 CONFLICT SEQADV 5EHI LEU A 257 UNP P27915 EXPRESSION TAG SEQADV 5EHI GLY A 258 UNP P27915 EXPRESSION TAG SEQADV 5EHI ALA A 259 UNP P27915 EXPRESSION TAG SEQADV 5EHI GLY A 260 UNP P27915 EXPRESSION TAG SEQADV 5EHI THR A 261 UNP P27915 EXPRESSION TAG SEQADV 5EHI ARG A 262 UNP P27915 EXPRESSION TAG SEQADV 5EHI HIS A 263 UNP P27915 EXPRESSION TAG SEQADV 5EHI VAL A 264 UNP P27915 EXPRESSION TAG SEQADV 5EHI ASN A 265 UNP P27915 EXPRESSION TAG SEQADV 5EHI ALA A 266 UNP P27915 EXPRESSION TAG SEQADV 5EHI GLU A 267 UNP P27915 EXPRESSION TAG SEQADV 5EHI PRO A 268 UNP P27915 EXPRESSION TAG SEQADV 5EHI GLU A 269 UNP P27915 EXPRESSION TAG SEQADV 5EHI THR A 270 UNP P27915 EXPRESSION TAG SEQADV 5EHI PRO A 271 UNP P27915 EXPRESSION TAG SEQADV 5EHI ASN A 272 UNP P27915 EXPRESSION TAG SEQADV 5EHI MET A 273 UNP P27915 EXPRESSION TAG SEQADV 5EHI ASP A 274 UNP P27915 EXPRESSION TAG SEQADV 5EHI VAL A 275 UNP P27915 EXPRESSION TAG SEQADV 5EHI ILE A 276 UNP P27915 EXPRESSION TAG SEQADV 5EHI THR C 50 UNP P27915 ILE 2540 CONFLICT SEQADV 5EHI LEU C 257 UNP P27915 EXPRESSION TAG SEQADV 5EHI GLY C 258 UNP P27915 EXPRESSION TAG SEQADV 5EHI ALA C 259 UNP P27915 EXPRESSION TAG SEQADV 5EHI GLY C 260 UNP P27915 EXPRESSION TAG SEQADV 5EHI THR C 261 UNP P27915 EXPRESSION TAG SEQADV 5EHI ARG C 262 UNP P27915 EXPRESSION TAG SEQADV 5EHI HIS C 263 UNP P27915 EXPRESSION TAG SEQADV 5EHI VAL C 264 UNP P27915 EXPRESSION TAG SEQADV 5EHI ASN C 265 UNP P27915 EXPRESSION TAG SEQADV 5EHI ALA C 266 UNP P27915 EXPRESSION TAG SEQADV 5EHI GLU C 267 UNP P27915 EXPRESSION TAG SEQADV 5EHI PRO C 268 UNP P27915 EXPRESSION TAG SEQADV 5EHI GLU C 269 UNP P27915 EXPRESSION TAG SEQADV 5EHI THR C 270 UNP P27915 EXPRESSION TAG SEQADV 5EHI PRO C 271 UNP P27915 EXPRESSION TAG SEQADV 5EHI ASN C 272 UNP P27915 EXPRESSION TAG SEQADV 5EHI MET C 273 UNP P27915 EXPRESSION TAG SEQADV 5EHI ASP C 274 UNP P27915 EXPRESSION TAG SEQADV 5EHI VAL C 275 UNP P27915 EXPRESSION TAG SEQADV 5EHI ILE C 276 UNP P27915 EXPRESSION TAG SEQRES 1 A 276 GLY THR GLY SER GLN GLY GLU THR LEU GLY GLU LYS TRP SEQRES 2 A 276 LYS LYS LYS LEU ASN GLN LEU SER ARG LYS GLU PHE ASP SEQRES 3 A 276 LEU TYR LYS LYS SER GLY ILE THR GLU VAL ASP ARG THR SEQRES 4 A 276 GLU ALA LYS GLU GLY LEU LYS ARG GLY GLU THR THR HIS SEQRES 5 A 276 HIS ALA VAL SER ARG GLY SER ALA LYS LEU GLN TRP PHE SEQRES 6 A 276 VAL GLU ARG ASN MET VAL ILE PRO GLU GLY ARG VAL ILE SEQRES 7 A 276 ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR CYS SEQRES 8 A 276 ALA GLY LEU LYS LYS VAL THR GLU VAL ARG GLY TYR THR SEQRES 9 A 276 LYS GLY GLY PRO GLY HIS GLU GLU PRO VAL PRO MET SER SEQRES 10 A 276 THR TYR GLY TRP ASN ILE VAL LYS LEU MET SER GLY LYS SEQRES 11 A 276 ASP VAL PHE TYR LEU PRO PRO GLU LYS CYS ASP THR LEU SEQRES 12 A 276 LEU CYS ASP ILE GLY GLU SER SER PRO SER PRO THR VAL SEQRES 13 A 276 GLU GLU SER ARG THR ILE ARG VAL LEU LYS MET VAL GLU SEQRES 14 A 276 PRO TRP LEU LYS ASN ASN GLN PHE CYS ILE LYS VAL LEU SEQRES 15 A 276 ASN PRO TYR MET PRO THR VAL ILE GLU HIS LEU GLU ARG SEQRES 16 A 276 LEU GLN ARG LYS HIS GLY GLY MET LEU VAL ARG ASN PRO SEQRES 17 A 276 LEU SER ARG ASN SER THR HIS GLU MET TYR TRP ILE SER SEQRES 18 A 276 ASN GLY THR GLY ASN ILE VAL SER SER VAL ASN MET VAL SEQRES 19 A 276 SER ARG LEU LEU LEU ASN ARG PHE THR MET THR HIS ARG SEQRES 20 A 276 ARG PRO THR ILE GLU LYS ASP VAL ASP LEU GLY ALA GLY SEQRES 21 A 276 THR ARG HIS VAL ASN ALA GLU PRO GLU THR PRO ASN MET SEQRES 22 A 276 ASP VAL ILE SEQRES 1 C 276 GLY THR GLY SER GLN GLY GLU THR LEU GLY GLU LYS TRP SEQRES 2 C 276 LYS LYS LYS LEU ASN GLN LEU SER ARG LYS GLU PHE ASP SEQRES 3 C 276 LEU TYR LYS LYS SER GLY ILE THR GLU VAL ASP ARG THR SEQRES 4 C 276 GLU ALA LYS GLU GLY LEU LYS ARG GLY GLU THR THR HIS SEQRES 5 C 276 HIS ALA VAL SER ARG GLY SER ALA LYS LEU GLN TRP PHE SEQRES 6 C 276 VAL GLU ARG ASN MET VAL ILE PRO GLU GLY ARG VAL ILE SEQRES 7 C 276 ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR CYS SEQRES 8 C 276 ALA GLY LEU LYS LYS VAL THR GLU VAL ARG GLY TYR THR SEQRES 9 C 276 LYS GLY GLY PRO GLY HIS GLU GLU PRO VAL PRO MET SER SEQRES 10 C 276 THR TYR GLY TRP ASN ILE VAL LYS LEU MET SER GLY LYS SEQRES 11 C 276 ASP VAL PHE TYR LEU PRO PRO GLU LYS CYS ASP THR LEU SEQRES 12 C 276 LEU CYS ASP ILE GLY GLU SER SER PRO SER PRO THR VAL SEQRES 13 C 276 GLU GLU SER ARG THR ILE ARG VAL LEU LYS MET VAL GLU SEQRES 14 C 276 PRO TRP LEU LYS ASN ASN GLN PHE CYS ILE LYS VAL LEU SEQRES 15 C 276 ASN PRO TYR MET PRO THR VAL ILE GLU HIS LEU GLU ARG SEQRES 16 C 276 LEU GLN ARG LYS HIS GLY GLY MET LEU VAL ARG ASN PRO SEQRES 17 C 276 LEU SER ARG ASN SER THR HIS GLU MET TYR TRP ILE SER SEQRES 18 C 276 ASN GLY THR GLY ASN ILE VAL SER SER VAL ASN MET VAL SEQRES 19 C 276 SER ARG LEU LEU LEU ASN ARG PHE THR MET THR HIS ARG SEQRES 20 C 276 ARG PRO THR ILE GLU LYS ASP VAL ASP LEU GLY ALA GLY SEQRES 21 C 276 THR ARG HIS VAL ASN ALA GLU PRO GLU THR PRO ASN MET SEQRES 22 C 276 ASP VAL ILE HET SAM A4001 54 HET 5O3 A4002 31 HET SAM C4000 54 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM 5O3 4-[[3-[(2-AZANYL-4-CHLORANYL-PHENYL) HETNAM 2 5O3 CARBAMOYLAMINO]PHENYL]SULFONYLAMINO]BENZOIC ACID FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 5O3 C20 H17 CL N4 O5 S FORMUL 6 HOH *872(H2 O) HELIX 1 AA1 THR A 8 LEU A 20 1 13 HELIX 2 AA2 SER A 21 LYS A 29 1 9 HELIX 3 AA3 ARG A 38 ARG A 47 1 10 HELIX 4 AA4 ARG A 57 ARG A 68 1 12 HELIX 5 AA5 GLY A 85 ALA A 92 1 8 HELIX 6 AA6 GLY A 120 ASN A 122 5 3 HELIX 7 AA7 ASP A 131 LEU A 135 5 5 HELIX 8 AA8 SER A 153 GLU A 169 1 17 HELIX 9 AA9 PRO A 170 LEU A 172 5 3 HELIX 10 AB1 MET A 186 GLY A 201 1 16 HELIX 11 AB2 ASN A 226 ARG A 241 1 16 HELIX 12 AB3 THR C 8 GLN C 19 1 12 HELIX 13 AB4 SER C 21 SER C 31 1 11 HELIX 14 AB5 ARG C 38 ARG C 47 1 10 HELIX 15 AB6 ARG C 57 GLU C 67 1 11 HELIX 16 AB7 GLY C 85 ALA C 92 1 8 HELIX 17 AB8 GLY C 120 ASN C 122 5 3 HELIX 18 AB9 ASP C 131 LEU C 135 5 5 HELIX 19 AC1 SER C 153 GLU C 169 1 17 HELIX 20 AC2 PRO C 170 LEU C 172 5 3 HELIX 21 AC3 MET C 186 GLY C 201 1 16 HELIX 22 AC4 ASN C 226 MET C 244 1 19 SHEET 1 AA1 2 THR A 34 ASP A 37 0 SHEET 2 AA1 2 THR A 250 LYS A 253 1 O THR A 250 N GLU A 35 SHEET 1 AA2 7 VAL A 124 MET A 127 0 SHEET 2 AA2 7 VAL A 97 TYR A 103 1 N GLY A 102 O LYS A 125 SHEET 3 AA2 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 AA2 7 THR A 142 CYS A 145 1 O LEU A 144 N ILE A 78 SHEET 5 AA2 7 GLN A 176 VAL A 181 1 O GLN A 176 N LEU A 143 SHEET 6 AA2 7 MET A 217 ILE A 220 -1 O MET A 217 N VAL A 181 SHEET 7 AA2 7 MET A 203 VAL A 205 -1 N VAL A 205 O TYR A 218 SHEET 1 AA3 2 THR C 34 ASP C 37 0 SHEET 2 AA3 2 THR C 250 LYS C 253 1 O THR C 250 N GLU C 35 SHEET 1 AA4 7 VAL C 124 MET C 127 0 SHEET 2 AA4 7 VAL C 97 TYR C 103 1 N GLY C 102 O LYS C 125 SHEET 3 AA4 7 GLY C 75 LEU C 80 1 N VAL C 77 O GLU C 99 SHEET 4 AA4 7 THR C 142 CYS C 145 1 O LEU C 144 N LEU C 80 SHEET 5 AA4 7 GLN C 176 VAL C 181 1 O GLN C 176 N LEU C 143 SHEET 6 AA4 7 MET C 217 ILE C 220 -1 O MET C 217 N VAL C 181 SHEET 7 AA4 7 MET C 203 VAL C 205 -1 N MET C 203 O ILE C 220 SITE 1 AC1 23 SER A 56 GLY A 58 GLY A 81 CYS A 82 SITE 2 AC1 23 GLY A 83 GLY A 86 TRP A 87 THR A 104 SITE 3 AC1 23 LYS A 105 HIS A 110 GLU A 111 LYS A 130 SITE 4 AC1 23 ASP A 131 VAL A 132 PHE A 133 ASP A 146 SITE 5 AC1 23 ILE A 147 HOH A4110 HOH A4114 HOH A4125 SITE 6 AC1 23 HOH A4241 HOH A4316 HOH A4532 SITE 1 AC2 13 TRP A 64 ARG A 68 MET A 70 GLY A 107 SITE 2 AC2 13 PRO A 108 GLY A 109 HIS A 110 GLU A 111 SITE 3 AC2 13 GLU A 112 MET A 233 HOH A4132 HOH A4312 SITE 4 AC2 13 HOH A4332 SITE 1 AC3 22 SER C 56 GLY C 58 GLY C 81 CYS C 82 SITE 2 AC3 22 GLY C 83 GLY C 86 TRP C 87 THR C 104 SITE 3 AC3 22 LYS C 105 HIS C 110 GLU C 111 LYS C 130 SITE 4 AC3 22 ASP C 131 VAL C 132 PHE C 133 ASP C 146 SITE 5 AC3 22 ILE C 147 HOH C4106 HOH C4125 HOH C4139 SITE 6 AC3 22 HOH C4264 HOH C4330 CRYST1 60.895 185.566 51.408 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019452 0.00000