HEADER TRANSFERASE 28-OCT-15 5EHL
TITLE RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF MONOPOLAR
TITLE 2 SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED HYDRIDIZATION
TITLE 3 APPROACH
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE,PYT;
COMPND 5 EC: 2.7.12.1;
COMPND 6 ENGINEERED: YES;
COMPND 7 OTHER_DETAILS: [3-TERT-BUTYL-1-(4-METHYLPHENYL)-1H-PYRAZOL-5-YL]UREA
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: TTK, MPS1, MPS1L1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS SPINDLE ASSEMBLY CHECKPOINT (SAC), ONCOLOGY TARGET PYRIDO[3, 4-
KEYWDS 2 D]PYRIMIDINE BASED INHIBITORS SELECTIVE AGAINST MPS1, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,N.CRONIN,
AUTHOR 2 A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,G.MAK,G.BOX,M.VALENTI,
AUTHOR 3 A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,J.SCHMITT,R.BURKE,R.L.M.VAN
AUTHOR 4 MONTFORT,F.I.RAYMAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER
REVDAT 4 08-MAY-24 5EHL 1 REMARK
REVDAT 3 04-APR-18 5EHL 1 SOURCE
REVDAT 2 30-AUG-17 5EHL 1 REMARK
REVDAT 1 09-NOV-16 5EHL 0
JRNL AUTH P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,
JRNL AUTH 2 N.CRONIN,A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,
JRNL AUTH 3 G.MAK,G.BOX,M.VALENTI,A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,
JRNL AUTH 4 J.SCHMITT,R.BURKE,R.L.M.VAN MONTFORT,F.I.RAYMAUD,S.A.ECCLES,
JRNL AUTH 5 S.LINARDOPOULOS,J.BLAGG,S.HOELDER
JRNL TITL RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF
JRNL TITL 2 MONOPOLAR SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED
JRNL TITL 3 HYDRIDIZATION APPROACH
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.66 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.16
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7
REMARK 3 NUMBER OF REFLECTIONS : 11966
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.190
REMARK 3 R VALUE (WORKING SET) : 0.189
REMARK 3 FREE R VALUE : 0.219
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830
REMARK 3 FREE R VALUE TEST SET COUNT : 578
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 6
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.91
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2877
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2285
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2731
REMARK 3 BIN R VALUE (WORKING SET) : 0.2268
REMARK 3 BIN FREE R VALUE : 0.2618
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.07
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1993
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 20
REMARK 3 SOLVENT ATOMS : 32
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 78.80
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.46
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 5.67680
REMARK 3 B22 (A**2) : -13.18020
REMARK 3 B33 (A**2) : 7.50340
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.325
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.374
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.241
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.373
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.244
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2059 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2806 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 679 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 49 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 310 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2059 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 282 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2249 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.13
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.34
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|516 - 602}
REMARK 3 ORIGIN FOR THE GROUP (A): 9.1062 -28.9602 -14.4913
REMARK 3 T TENSOR
REMARK 3 T11: -0.1958 T22: -0.0897
REMARK 3 T33: -0.0364 T12: -0.1139
REMARK 3 T13: 0.0529 T23: 0.0393
REMARK 3 L TENSOR
REMARK 3 L11: 6.7516 L22: 2.4576
REMARK 3 L33: 4.8763 L12: 0.5669
REMARK 3 L13: 0.2887 L23: -0.1746
REMARK 3 S TENSOR
REMARK 3 S11: -0.0513 S12: -0.5442 S13: -0.3636
REMARK 3 S21: 0.2035 S22: -0.2449 S23: -0.0907
REMARK 3 S31: -0.2316 S32: 0.3344 S33: 0.2962
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|603 - 729}
REMARK 3 ORIGIN FOR THE GROUP (A): -8.3437 -38.2565 -23.2023
REMARK 3 T TENSOR
REMARK 3 T11: -0.2714 T22: -0.1059
REMARK 3 T33: 0.0091 T12: -0.0221
REMARK 3 T13: 0.0201 T23: 0.1085
REMARK 3 L TENSOR
REMARK 3 L11: 5.6359 L22: 3.8111
REMARK 3 L33: 3.7176 L12: 0.9407
REMARK 3 L13: 1.5332 L23: -0.5191
REMARK 3 S TENSOR
REMARK 3 S11: 0.0786 S12: -0.5436 S13: -0.5356
REMARK 3 S21: 0.1215 S22: -0.1678 S23: 0.1660
REMARK 3 S31: 0.1054 S32: -0.1489 S33: 0.0892
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: {A|730 - 794}
REMARK 3 ORIGIN FOR THE GROUP (A): -16.9258 -45.4464 -30.6320
REMARK 3 T TENSOR
REMARK 3 T11: -0.2957 T22: -0.1032
REMARK 3 T33: 0.2165 T12: -0.0796
REMARK 3 T13: -0.0961 T23: 0.0260
REMARK 3 L TENSOR
REMARK 3 L11: 1.3801 L22: 4.8065
REMARK 3 L33: 2.8657 L12: -0.7885
REMARK 3 L13: -0.3727 L23: -0.2753
REMARK 3 S TENSOR
REMARK 3 S11: 0.0562 S12: 0.1580 S13: -0.5442
REMARK 3 S21: -0.0641 S22: -0.1271 S23: 0.2605
REMARK 3 S31: 0.4254 S32: -0.5429 S33: 0.0708
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5EHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-15.
REMARK 100 THE DEPOSITION ID IS D_1000214926.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 07-FEB-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.91999
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12032
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660
REMARK 200 RESOLUTION RANGE LOW (A) : 60.160
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3
REMARK 200 DATA REDUNDANCY : 3.700
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6
REMARK 200 DATA REDUNDANCY IN SHELL : 3.80
REMARK 200 R MERGE FOR SHELL (I) : 0.56000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 58.02
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS TRIS PROPANE PH 7.5 0.2M
REMARK 280 MGCL2 0.2M SODIUM FORMATE 25% PEG3350, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 291.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.56500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.59000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.38000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.56500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.59000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.38000
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.56500
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.59000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.38000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.56500
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.59000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.38000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12640 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 496
REMARK 465 HIS A 497
REMARK 465 HIS A 498
REMARK 465 HIS A 499
REMARK 465 HIS A 500
REMARK 465 HIS A 501
REMARK 465 HIS A 502
REMARK 465 SER A 503
REMARK 465 SER A 504
REMARK 465 GLY A 505
REMARK 465 VAL A 506
REMARK 465 ASP A 507
REMARK 465 LEU A 508
REMARK 465 GLY A 509
REMARK 465 THR A 510
REMARK 465 GLU A 511
REMARK 465 ASN A 512
REMARK 465 LEU A 513
REMARK 465 TYR A 514
REMARK 465 GLN A 670
REMARK 465 MET A 671
REMARK 465 GLN A 672
REMARK 465 PRO A 673
REMARK 465 ASP A 674
REMARK 465 THR A 675
REMARK 465 THR A 676
REMARK 465 SER A 677
REMARK 465 VAL A 678
REMARK 465 VAL A 679
REMARK 465 LYS A 680
REMARK 465 ASP A 681
REMARK 465 SER A 682
REMARK 465 GLN A 683
REMARK 465 SER A 699
REMARK 465 SER A 700
REMARK 465 SER A 701
REMARK 465 ARG A 702
REMARK 465 GLU A 703
REMARK 465 ASN A 704
REMARK 465 GLY A 705
REMARK 465 LYS A 706
REMARK 465 SER A 707
REMARK 465 LYS A 708
REMARK 465 PRO A 797
REMARK 465 VAL A 798
REMARK 465 ASN A 799
REMARK 465 GLN A 800
REMARK 465 MET A 801
REMARK 465 ALA A 802
REMARK 465 LYS A 803
REMARK 465 GLY A 804
REMARK 465 THR A 805
REMARK 465 THR A 806
REMARK 465 GLU A 807
REMARK 465 GLU A 808
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 PHE A 515 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 GLN A 516 CG CD OE1 NE2
REMARK 470 ARG A 523 CD NE CZ NH1 NH2
REMARK 470 LYS A 529 CG CD CE NZ
REMARK 470 SER A 533 OG
REMARK 470 SER A 536 OG
REMARK 470 LYS A 538 CD CE NZ
REMARK 470 GLU A 545 CD OE1 OE2
REMARK 470 LYS A 546 CG CD CE NZ
REMARK 470 LYS A 547 CG CD CE NZ
REMARK 470 LYS A 553 CE NZ
REMARK 470 GLU A 558 CD OE1 OE2
REMARK 470 GLU A 559 CG CD OE1 OE2
REMARK 470 GLN A 563 CG CD OE1 NE2
REMARK 470 LYS A 577 CE NZ
REMARK 470 GLN A 580 CD OE1 NE2
REMARK 470 LYS A 615 CG CD CE NZ
REMARK 470 LYS A 616 CG CD CE NZ
REMARK 470 LYS A 617 CG CD CE NZ
REMARK 470 SER A 618 OG
REMARK 470 ASP A 620 CG OD1 OD2
REMARK 470 ASP A 657 CG OD1 OD2
REMARK 470 VAL A 684 CG1 CG2
REMARK 470 LYS A 696 CG CD CE NZ
REMARK 470 SER A 709 OG
REMARK 470 LYS A 710 CG CD CE NZ
REMARK 470 ILE A 738 CG1 CG2 CD1
REMARK 470 GLU A 753 CG CD OE1 OE2
REMARK 470 LYS A 762 CG CD CE NZ
REMARK 470 LYS A 769 CG CD CE NZ
REMARK 470 LYS A 773 CD CE NZ
REMARK 470 LYS A 777 CG CD CE NZ
REMARK 470 GLN A 794 CG CD OE1 NE2
REMARK 470 THR A 795 OG1 CG2
REMARK 470 HIS A 796 CG ND1 CD2 CE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 547 8.11 85.59
REMARK 500 ASP A 647 31.79 -142.15
REMARK 500 LYS A 710 2.46 81.84
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 0SQ A 901
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5EH0 RELATED DB: PDB
REMARK 900 5EH0 CONTAINS THE SAME PROTEIN COMPLEXED WITH N2-(2-METHOXY-4-(1-
REMARK 900 METHYL-1H-PYRAZOL-4-YL)PHENYL)-N8-NEOPENTYLPYRIDO[3,4-D]PYRIMIDINE-
REMARK 900 2,8-DIAMINE
DBREF 5EHL A 519 808 UNP P33981 TTK_HUMAN 519 808
SEQADV 5EHL MET A 496 UNP P33981 INITIATING METHIONINE
SEQADV 5EHL HIS A 497 UNP P33981 EXPRESSION TAG
SEQADV 5EHL HIS A 498 UNP P33981 EXPRESSION TAG
SEQADV 5EHL HIS A 499 UNP P33981 EXPRESSION TAG
SEQADV 5EHL HIS A 500 UNP P33981 EXPRESSION TAG
SEQADV 5EHL HIS A 501 UNP P33981 EXPRESSION TAG
SEQADV 5EHL HIS A 502 UNP P33981 EXPRESSION TAG
SEQADV 5EHL SER A 503 UNP P33981 EXPRESSION TAG
SEQADV 5EHL SER A 504 UNP P33981 EXPRESSION TAG
SEQADV 5EHL GLY A 505 UNP P33981 EXPRESSION TAG
SEQADV 5EHL VAL A 506 UNP P33981 EXPRESSION TAG
SEQADV 5EHL ASP A 507 UNP P33981 EXPRESSION TAG
SEQADV 5EHL LEU A 508 UNP P33981 EXPRESSION TAG
SEQADV 5EHL GLY A 509 UNP P33981 EXPRESSION TAG
SEQADV 5EHL THR A 510 UNP P33981 EXPRESSION TAG
SEQADV 5EHL GLU A 511 UNP P33981 EXPRESSION TAG
SEQADV 5EHL ASN A 512 UNP P33981 EXPRESSION TAG
SEQADV 5EHL LEU A 513 UNP P33981 EXPRESSION TAG
SEQADV 5EHL TYR A 514 UNP P33981 EXPRESSION TAG
SEQADV 5EHL PHE A 515 UNP P33981 EXPRESSION TAG
SEQADV 5EHL GLN A 516 UNP P33981 EXPRESSION TAG
SEQADV 5EHL SER A 517 UNP P33981 EXPRESSION TAG
SEQADV 5EHL MET A 518 UNP P33981 EXPRESSION TAG
SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU
SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS
SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY
SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS
SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA
SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA
SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE
SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR
SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP
SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS
SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE
SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA
SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP
SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR THR SER
SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY THR VAL ASN TYR MET
SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU
SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP
SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR
SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER
SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU
SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU
SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER
SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN
SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU
SEQRES 25 A 313 GLU
HET 0SQ A 901 20
HETNAM 0SQ 1-[3-TERT-BUTYL-1-(4-METHYLPHENYL)-1H-PYRAZOL-5-YL]UREA
FORMUL 2 0SQ C15 H20 N4 O
FORMUL 3 HOH *32(H2 O)
HELIX 1 AA1 ASP A 561 LEU A 578 1 18
HELIX 2 AA2 LEU A 609 LYS A 616 1 8
HELIX 3 AA3 ASP A 620 HIS A 641 1 22
HELIX 4 AA4 LYS A 649 ALA A 651 5 3
HELIX 5 AA5 PRO A 691 MET A 698 1 8
HELIX 6 AA6 SER A 712 GLY A 730 1 19
HELIX 7 AA7 ASN A 739 ASP A 749 1 11
HELIX 8 AA8 GLU A 761 LEU A 772 1 12
HELIX 9 AA9 SER A 781 ALA A 787 1 7
HELIX 10 AB1 HIS A 788 ILE A 793 1 6
SHEET 1 AA1 6 SER A 517 VAL A 520 0
SHEET 2 AA1 6 ARG A 523 SER A 533 -1 O TYR A 525 N MET A 518
SHEET 3 AA1 6 SER A 537 LEU A 543 -1 O GLN A 541 N LYS A 529
SHEET 4 AA1 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538
SHEET 5 AA1 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551
SHEET 6 AA1 6 LEU A 588 ILE A 593 -1 N GLU A 592 O TYR A 599
SHEET 1 AA2 3 ILE A 607 ASP A 608 0
SHEET 2 AA2 3 PHE A 653 VAL A 656 -1 O ILE A 655 N ILE A 607
SHEET 3 AA2 3 MET A 659 LEU A 662 -1 O MET A 659 N VAL A 656
SITE 1 AC1 5 VAL A 539 MET A 602 GLY A 605 ASP A 608
SITE 2 AC1 5 LEU A 654
CRYST1 71.130 105.180 112.760 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014059 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009508 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008868 0.00000