HEADER TRANSFERASE 28-OCT-15 5EHO
TITLE RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF MONOPOLAR
TITLE 2 SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED HYDRIDIZATION
TITLE 3 APPROACH
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 519-808;
COMPND 5 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE,PYT;
COMPND 6 EC: 2.7.12.1;
COMPND 7 ENGINEERED: YES;
COMPND 8 OTHER_DETAILS: N8-CYCLOHEXYL-N2-[2-METHOXY-4-(1-METHYL-1H-PYRAZOL-4-
COMPND 9 YL)PHENYL]PYRIDO[3,4-D]PYRIMIDINE-2,8-DIAMINE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: TTK, MPS1, MPS1L1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS SPINDLE ASSEMBLY CHECKPOINT (SAC), ONCOLOGY TARGET PYRIDO[3, 4-
KEYWDS 2 D]PYRIMIDINE BASED INHIBITORS SELECTIVE AGAINST MPS1, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,N.CRONIN,
AUTHOR 2 A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,G.MAK,G.BOX,M.VALENTI,
AUTHOR 3 A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,J.SCHMITT,R.BURKE,R.L.M.VAN
AUTHOR 4 MONTFORT,F.I.RAYMAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER
REVDAT 4 08-MAY-24 5EHO 1 REMARK
REVDAT 3 04-APR-18 5EHO 1 SOURCE
REVDAT 2 30-AUG-17 5EHO 1 REMARK
REVDAT 1 09-NOV-16 5EHO 0
JRNL AUTH P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,
JRNL AUTH 2 N.CRONIN,A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,
JRNL AUTH 3 G.MAK,G.BOX,M.VALENTI,A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,
JRNL AUTH 4 J.SCHMITT,R.BURKE,R.L.M.VAN MONTFORT,F.I.RAYMAUD,S.A.ECCLES,
JRNL AUTH 5 S.LINARDOPOULOS,J.BLAGG,S.HOELDER
JRNL TITL RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF
JRNL TITL 2 MONOPOLAR SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED
JRNL TITL 3 HYDRIDIZATION APPROACH
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.18 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.52
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 22261
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.191
REMARK 3 R VALUE (WORKING SET) : 0.190
REMARK 3 FREE R VALUE : 0.207
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860
REMARK 3 FREE R VALUE TEST SET COUNT : 1082
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 11
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2948
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2256
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2813
REMARK 3 BIN R VALUE (WORKING SET) : 0.2252
REMARK 3 BIN FREE R VALUE : 0.2323
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.58
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2021
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 36
REMARK 3 SOLVENT ATOMS : 67
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 55.30
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.37
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 5.88550
REMARK 3 B22 (A**2) : -11.06840
REMARK 3 B33 (A**2) : 5.18300
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.297
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.162
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.138
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.162
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.139
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2110 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2865 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 711 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 52 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 324 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2110 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 281 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2476 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.08
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.07
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.01
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 5
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|516 - 561}
REMARK 3 ORIGIN FOR THE GROUP (A): 10.2750 -30.5556 -7.9382
REMARK 3 T TENSOR
REMARK 3 T11: -0.1292 T22: 0.0836
REMARK 3 T33: -0.2015 T12: -0.0452
REMARK 3 T13: 0.0111 T23: 0.0591
REMARK 3 L TENSOR
REMARK 3 L11: 6.2641 L22: 8.2121
REMARK 3 L33: 6.3244 L12: 0.1777
REMARK 3 L13: -1.8530 L23: -1.6086
REMARK 3 S TENSOR
REMARK 3 S11: -0.0657 S12: -0.5442 S13: -0.3281
REMARK 3 S21: -0.0723 S22: 0.0252 S23: -0.5442
REMARK 3 S31: -0.0057 S32: 0.3574 S33: 0.0405
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|562 - 620}
REMARK 3 ORIGIN FOR THE GROUP (A): 2.7975 -30.0796 -17.4606
REMARK 3 T TENSOR
REMARK 3 T11: -0.0576 T22: -0.0503
REMARK 3 T33: -0.1196 T12: 0.0030
REMARK 3 T13: 0.0498 T23: 0.0485
REMARK 3 L TENSOR
REMARK 3 L11: 8.1739 L22: 0.3277
REMARK 3 L33: 2.7496 L12: 2.9104
REMARK 3 L13: 1.7248 L23: -0.2114
REMARK 3 S TENSOR
REMARK 3 S11: -0.1315 S12: -0.4905 S13: -0.3714
REMARK 3 S21: 0.1093 S22: -0.0125 S23: -0.1351
REMARK 3 S31: -0.1956 S32: -0.1848 S33: 0.1440
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: {A|621 - 641}
REMARK 3 ORIGIN FOR THE GROUP (A): -13.1791 -31.2358 -22.4531
REMARK 3 T TENSOR
REMARK 3 T11: -0.1441 T22: 0.0420
REMARK 3 T33: -0.0429 T12: 0.0403
REMARK 3 T13: -0.0359 T23: 0.0662
REMARK 3 L TENSOR
REMARK 3 L11: 6.6286 L22: 1.4297
REMARK 3 L33: 2.5612 L12: 1.1079
REMARK 3 L13: 0.5777 L23: 0.0430
REMARK 3 S TENSOR
REMARK 3 S11: -0.0565 S12: -0.4944 S13: 0.2331
REMARK 3 S21: -0.0927 S22: -0.0642 S23: 0.2334
REMARK 3 S31: -0.3201 S32: -0.3851 S33: 0.1207
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: {A|642 - 712}
REMARK 3 ORIGIN FOR THE GROUP (A): -2.4679 -39.2725 -23.6518
REMARK 3 T TENSOR
REMARK 3 T11: -0.1467 T22: -0.0184
REMARK 3 T33: -0.0506 T12: 0.0156
REMARK 3 T13: -0.0160 T23: 0.1128
REMARK 3 L TENSOR
REMARK 3 L11: 4.2765 L22: 2.6371
REMARK 3 L33: 8.0864 L12: 1.1523
REMARK 3 L13: 1.1735 L23: 1.7545
REMARK 3 S TENSOR
REMARK 3 S11: 0.1653 S12: -0.4783 S13: -0.5442
REMARK 3 S21: -0.0369 S22: -0.0847 S23: -0.0663
REMARK 3 S31: 0.2579 S32: 0.3827 S33: -0.0806
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: {A|713 - 794}
REMARK 3 ORIGIN FOR THE GROUP (A): -16.0259 -44.5985 -28.7628
REMARK 3 T TENSOR
REMARK 3 T11: -0.1553 T22: -0.0239
REMARK 3 T33: 0.0654 T12: -0.0774
REMARK 3 T13: -0.0727 T23: 0.0667
REMARK 3 L TENSOR
REMARK 3 L11: 1.0989 L22: 3.4653
REMARK 3 L33: 2.2433 L12: -1.1569
REMARK 3 L13: 0.1495 L23: -0.3693
REMARK 3 S TENSOR
REMARK 3 S11: 0.0707 S12: -0.1310 S13: -0.5442
REMARK 3 S21: -0.1132 S22: -0.0056 S23: 0.4894
REMARK 3 S31: 0.3674 S32: -0.5442 S33: -0.0651
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5EHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-15.
REMARK 100 THE DEPOSITION ID IS D_1000214930.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-APR-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22262
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180
REMARK 200 RESOLUTION RANGE LOW (A) : 40.520
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 2.700
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.63
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE PH 7.5, 0.1M
REMARK 280 SODIUM FORMATE, 0.1M MGCL2, 20% PEG 3350, VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 291.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.47250
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.74300
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.84600
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.47250
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.74300
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.84600
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.47250
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.74300
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.84600
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.47250
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.74300
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.84600
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 210 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12030 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 496
REMARK 465 HIS A 497
REMARK 465 HIS A 498
REMARK 465 HIS A 499
REMARK 465 HIS A 500
REMARK 465 HIS A 501
REMARK 465 HIS A 502
REMARK 465 SER A 503
REMARK 465 SER A 504
REMARK 465 GLY A 505
REMARK 465 VAL A 506
REMARK 465 ASP A 507
REMARK 465 LEU A 508
REMARK 465 GLY A 509
REMARK 465 THR A 510
REMARK 465 GLU A 511
REMARK 465 ASN A 512
REMARK 465 LEU A 513
REMARK 465 TYR A 514
REMARK 465 PHE A 515
REMARK 465 THR A 675
REMARK 465 THR A 676
REMARK 465 SER A 677
REMARK 465 VAL A 678
REMARK 465 VAL A 679
REMARK 465 LYS A 680
REMARK 465 ASP A 681
REMARK 465 SER A 682
REMARK 465 GLN A 683
REMARK 465 SER A 699
REMARK 465 SER A 700
REMARK 465 SER A 701
REMARK 465 ARG A 702
REMARK 465 GLU A 703
REMARK 465 ASN A 704
REMARK 465 GLY A 705
REMARK 465 LYS A 706
REMARK 465 SER A 707
REMARK 465 LYS A 708
REMARK 465 SER A 709
REMARK 465 LYS A 710
REMARK 465 THR A 795
REMARK 465 HIS A 796
REMARK 465 PRO A 797
REMARK 465 VAL A 798
REMARK 465 ASN A 799
REMARK 465 GLN A 800
REMARK 465 MET A 801
REMARK 465 ALA A 802
REMARK 465 LYS A 803
REMARK 465 GLY A 804
REMARK 465 THR A 805
REMARK 465 THR A 806
REMARK 465 GLU A 807
REMARK 465 GLU A 808
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLN A 516 CG CD OE1 NE2
REMARK 470 ARG A 523 NE CZ NH1 NH2
REMARK 470 LYS A 538 CD CE NZ
REMARK 470 GLU A 545 CD OE1 OE2
REMARK 470 LYS A 546 CG CD CE NZ
REMARK 470 LYS A 547 CG CD CE NZ
REMARK 470 GLU A 559 CG CD OE1 OE2
REMARK 470 ASN A 562 CG OD1 ND2
REMARK 470 GLN A 563 CG CD OE1 NE2
REMARK 470 LYS A 614 CE NZ
REMARK 470 LYS A 616 CD CE NZ
REMARK 470 LYS A 617 CG CD CE NZ
REMARK 470 LYS A 629 CG CD CE NZ
REMARK 470 ASP A 657 CG OD1 OD2
REMARK 470 GLN A 672 CG CD OE1 NE2
REMARK 470 VAL A 684 CG1 CG2
REMARK 470 LYS A 696 CE NZ
REMARK 470 ASP A 697 CG OD1 OD2
REMARK 470 ILE A 711 CG1 CG2 CD1
REMARK 470 ILE A 738 CG1 CG2 CD1
REMARK 470 GLU A 753 CD OE1 OE2
REMARK 470 GLU A 755 CG CD OE1 OE2
REMARK 470 LYS A 762 CD CE NZ
REMARK 470 LYS A 769 CE NZ
REMARK 470 LYS A 777 CG CD CE NZ
REMARK 470 GLN A 794 CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 646 -2.98 61.17
REMARK 500 ASP A 697 49.39 -74.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 5O1 A 901
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 902
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5EH0 RELATED DB: PDB
REMARK 900 5EH0 CONTAINS THE SAME PROTEIN COMPLEXED WITH N2-(2-METHOXY-4-(1-
REMARK 900 METHYL-1H-PYRAZOL-4-YL)PHENYL)-N8-NEOPENTYLPYRIDO[3,4-D]PYRIMIDINE-
REMARK 900 2,8-DIAMINE
DBREF 5EHO A 519 808 UNP P33981 TTK_HUMAN 519 808
SEQADV 5EHO MET A 496 UNP P33981 INITIATING METHIONINE
SEQADV 5EHO HIS A 497 UNP P33981 EXPRESSION TAG
SEQADV 5EHO HIS A 498 UNP P33981 EXPRESSION TAG
SEQADV 5EHO HIS A 499 UNP P33981 EXPRESSION TAG
SEQADV 5EHO HIS A 500 UNP P33981 EXPRESSION TAG
SEQADV 5EHO HIS A 501 UNP P33981 EXPRESSION TAG
SEQADV 5EHO HIS A 502 UNP P33981 EXPRESSION TAG
SEQADV 5EHO SER A 503 UNP P33981 EXPRESSION TAG
SEQADV 5EHO SER A 504 UNP P33981 EXPRESSION TAG
SEQADV 5EHO GLY A 505 UNP P33981 EXPRESSION TAG
SEQADV 5EHO VAL A 506 UNP P33981 EXPRESSION TAG
SEQADV 5EHO ASP A 507 UNP P33981 EXPRESSION TAG
SEQADV 5EHO LEU A 508 UNP P33981 EXPRESSION TAG
SEQADV 5EHO GLY A 509 UNP P33981 EXPRESSION TAG
SEQADV 5EHO THR A 510 UNP P33981 EXPRESSION TAG
SEQADV 5EHO GLU A 511 UNP P33981 EXPRESSION TAG
SEQADV 5EHO ASN A 512 UNP P33981 EXPRESSION TAG
SEQADV 5EHO LEU A 513 UNP P33981 EXPRESSION TAG
SEQADV 5EHO TYR A 514 UNP P33981 EXPRESSION TAG
SEQADV 5EHO PHE A 515 UNP P33981 EXPRESSION TAG
SEQADV 5EHO GLN A 516 UNP P33981 EXPRESSION TAG
SEQADV 5EHO SER A 517 UNP P33981 EXPRESSION TAG
SEQADV 5EHO MET A 518 UNP P33981 EXPRESSION TAG
SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU
SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS
SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY
SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS
SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA
SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA
SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE
SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR
SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP
SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS
SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE
SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA
SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP
SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR THR SER
SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY THR VAL ASN TYR MET
SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU
SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP
SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR
SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER
SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU
SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU
SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER
SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN
SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU
SEQRES 25 A 313 GLU
HET 5O1 A 901 32
HET DMS A 902 4
HETNAM 5O1 ~{N}8-CYCLOHEXYL-~{N}2-[2-METHOXY-4-(1-METHYLPYRAZOL-4-
HETNAM 2 5O1 YL)PHENYL]PYRIDO[3,4-D]PYRIMIDINE-2,8-DIAMINE
HETNAM DMS DIMETHYL SULFOXIDE
FORMUL 2 5O1 C24 H27 N7 O
FORMUL 3 DMS C2 H6 O S
FORMUL 4 HOH *67(H2 O)
HELIX 1 AA1 GLU A 558 ALA A 560 5 3
HELIX 2 AA2 ASP A 561 GLN A 579 1 19
HELIX 3 AA3 LEU A 609 LYS A 616 1 8
HELIX 4 AA4 ASP A 620 HIS A 641 1 22
HELIX 5 AA5 LYS A 649 ALA A 651 5 3
HELIX 6 AA6 PRO A 691 ASP A 697 1 7
HELIX 7 AA7 SER A 712 GLY A 730 1 19
HELIX 8 AA8 ASN A 739 ASP A 749 1 11
HELIX 9 AA9 GLU A 761 LEU A 772 1 12
HELIX 10 AB1 SER A 781 ALA A 787 1 7
HELIX 11 AB2 HIS A 788 ILE A 793 1 6
SHEET 1 AA1 6 SER A 517 VAL A 520 0
SHEET 2 AA1 6 ARG A 523 GLY A 534 -1 O TYR A 525 N MET A 518
SHEET 3 AA1 6 SER A 537 LEU A 543 -1 O SER A 537 N GLY A 534
SHEET 4 AA1 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538
SHEET 5 AA1 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551
SHEET 6 AA1 6 LEU A 588 ILE A 593 -1 N ASP A 590 O VAL A 601
SHEET 1 AA2 3 SER A 517 VAL A 520 0
SHEET 2 AA2 3 ARG A 523 GLY A 534 -1 O TYR A 525 N MET A 518
SHEET 3 AA2 3 GLN A 672 PRO A 673 -1 O GLN A 672 N SER A 533
SHEET 1 AA3 3 ILE A 607 ASP A 608 0
SHEET 2 AA3 3 PHE A 653 VAL A 656 -1 O ILE A 655 N ILE A 607
SHEET 3 AA3 3 MET A 659 LEU A 662 -1 O MET A 659 N VAL A 656
SITE 1 AC1 15 ILE A 531 ALA A 551 ILE A 586 MET A 602
SITE 2 AC1 15 GLU A 603 CYS A 604 GLY A 605 ASN A 606
SITE 3 AC1 15 ILE A 607 ASP A 608 SER A 611 LEU A 654
SITE 4 AC1 15 ILE A 663 PRO A 673 HOH A1028
SITE 1 AC2 1 TYR A 554
CRYST1 70.945 105.486 111.692 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014095 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009480 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008953 0.00000