HEADER TRANSFERASE 28-OCT-15 5EHO TITLE RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF MONOPOLAR TITLE 2 SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED HYDRIDIZATION TITLE 3 APPROACH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 519-808; COMPND 5 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE,PYT; COMPND 6 EC: 2.7.12.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: N8-CYCLOHEXYL-N2-[2-METHOXY-4-(1-METHYL-1H-PYRAZOL-4- COMPND 9 YL)PHENYL]PYRIDO[3,4-D]PYRIMIDINE-2,8-DIAMINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTK, MPS1, MPS1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SPINDLE ASSEMBLY CHECKPOINT (SAC), ONCOLOGY TARGET PYRIDO[3, 4- KEYWDS 2 D]PYRIMIDINE BASED INHIBITORS SELECTIVE AGAINST MPS1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,N.CRONIN, AUTHOR 2 A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,G.MAK,G.BOX,M.VALENTI, AUTHOR 3 A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,J.SCHMITT,R.BURKE,R.L.M.VAN AUTHOR 4 MONTFORT,F.I.RAYMAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER REVDAT 4 08-MAY-24 5EHO 1 REMARK REVDAT 3 04-APR-18 5EHO 1 SOURCE REVDAT 2 30-AUG-17 5EHO 1 REMARK REVDAT 1 09-NOV-16 5EHO 0 JRNL AUTH P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD, JRNL AUTH 2 N.CRONIN,A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL, JRNL AUTH 3 G.MAK,G.BOX,M.VALENTI,A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE, JRNL AUTH 4 J.SCHMITT,R.BURKE,R.L.M.VAN MONTFORT,F.I.RAYMAUD,S.A.ECCLES, JRNL AUTH 5 S.LINARDOPOULOS,J.BLAGG,S.HOELDER JRNL TITL RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF JRNL TITL 2 MONOPOLAR SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED JRNL TITL 3 HYDRIDIZATION APPROACH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1082 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2948 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2256 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2813 REMARK 3 BIN R VALUE (WORKING SET) : 0.2252 REMARK 3 BIN FREE R VALUE : 0.2323 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.58 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2021 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.88550 REMARK 3 B22 (A**2) : -11.06840 REMARK 3 B33 (A**2) : 5.18300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.297 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.139 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2110 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2865 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 711 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 52 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 324 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2110 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 281 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2476 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.07 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.01 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|516 - 561} REMARK 3 ORIGIN FOR THE GROUP (A): 10.2750 -30.5556 -7.9382 REMARK 3 T TENSOR REMARK 3 T11: -0.1292 T22: 0.0836 REMARK 3 T33: -0.2015 T12: -0.0452 REMARK 3 T13: 0.0111 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 6.2641 L22: 8.2121 REMARK 3 L33: 6.3244 L12: 0.1777 REMARK 3 L13: -1.8530 L23: -1.6086 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: -0.5442 S13: -0.3281 REMARK 3 S21: -0.0723 S22: 0.0252 S23: -0.5442 REMARK 3 S31: -0.0057 S32: 0.3574 S33: 0.0405 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|562 - 620} REMARK 3 ORIGIN FOR THE GROUP (A): 2.7975 -30.0796 -17.4606 REMARK 3 T TENSOR REMARK 3 T11: -0.0576 T22: -0.0503 REMARK 3 T33: -0.1196 T12: 0.0030 REMARK 3 T13: 0.0498 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 8.1739 L22: 0.3277 REMARK 3 L33: 2.7496 L12: 2.9104 REMARK 3 L13: 1.7248 L23: -0.2114 REMARK 3 S TENSOR REMARK 3 S11: -0.1315 S12: -0.4905 S13: -0.3714 REMARK 3 S21: 0.1093 S22: -0.0125 S23: -0.1351 REMARK 3 S31: -0.1956 S32: -0.1848 S33: 0.1440 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|621 - 641} REMARK 3 ORIGIN FOR THE GROUP (A): -13.1791 -31.2358 -22.4531 REMARK 3 T TENSOR REMARK 3 T11: -0.1441 T22: 0.0420 REMARK 3 T33: -0.0429 T12: 0.0403 REMARK 3 T13: -0.0359 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 6.6286 L22: 1.4297 REMARK 3 L33: 2.5612 L12: 1.1079 REMARK 3 L13: 0.5777 L23: 0.0430 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: -0.4944 S13: 0.2331 REMARK 3 S21: -0.0927 S22: -0.0642 S23: 0.2334 REMARK 3 S31: -0.3201 S32: -0.3851 S33: 0.1207 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|642 - 712} REMARK 3 ORIGIN FOR THE GROUP (A): -2.4679 -39.2725 -23.6518 REMARK 3 T TENSOR REMARK 3 T11: -0.1467 T22: -0.0184 REMARK 3 T33: -0.0506 T12: 0.0156 REMARK 3 T13: -0.0160 T23: 0.1128 REMARK 3 L TENSOR REMARK 3 L11: 4.2765 L22: 2.6371 REMARK 3 L33: 8.0864 L12: 1.1523 REMARK 3 L13: 1.1735 L23: 1.7545 REMARK 3 S TENSOR REMARK 3 S11: 0.1653 S12: -0.4783 S13: -0.5442 REMARK 3 S21: -0.0369 S22: -0.0847 S23: -0.0663 REMARK 3 S31: 0.2579 S32: 0.3827 S33: -0.0806 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|713 - 794} REMARK 3 ORIGIN FOR THE GROUP (A): -16.0259 -44.5985 -28.7628 REMARK 3 T TENSOR REMARK 3 T11: -0.1553 T22: -0.0239 REMARK 3 T33: 0.0654 T12: -0.0774 REMARK 3 T13: -0.0727 T23: 0.0667 REMARK 3 L TENSOR REMARK 3 L11: 1.0989 L22: 3.4653 REMARK 3 L33: 2.2433 L12: -1.1569 REMARK 3 L13: 0.1495 L23: -0.3693 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: -0.1310 S13: -0.5442 REMARK 3 S21: -0.1132 S22: -0.0056 S23: 0.4894 REMARK 3 S31: 0.3674 S32: -0.5442 S33: -0.0651 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 40.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE PH 7.5, 0.1M REMARK 280 SODIUM FORMATE, 0.1M MGCL2, 20% PEG 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.47250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.74300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.84600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.47250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.74300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.84600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.47250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.74300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.84600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.47250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.74300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.84600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 SER A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 VAL A 506 REMARK 465 ASP A 507 REMARK 465 LEU A 508 REMARK 465 GLY A 509 REMARK 465 THR A 510 REMARK 465 GLU A 511 REMARK 465 ASN A 512 REMARK 465 LEU A 513 REMARK 465 TYR A 514 REMARK 465 PHE A 515 REMARK 465 THR A 675 REMARK 465 THR A 676 REMARK 465 SER A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 ASP A 681 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 SER A 709 REMARK 465 LYS A 710 REMARK 465 THR A 795 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 516 CG CD OE1 NE2 REMARK 470 ARG A 523 NE CZ NH1 NH2 REMARK 470 LYS A 538 CD CE NZ REMARK 470 GLU A 545 CD OE1 OE2 REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 ASN A 562 CG OD1 ND2 REMARK 470 GLN A 563 CG CD OE1 NE2 REMARK 470 LYS A 614 CE NZ REMARK 470 LYS A 616 CD CE NZ REMARK 470 LYS A 617 CG CD CE NZ REMARK 470 LYS A 629 CG CD CE NZ REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 GLN A 672 CG CD OE1 NE2 REMARK 470 VAL A 684 CG1 CG2 REMARK 470 LYS A 696 CE NZ REMARK 470 ASP A 697 CG OD1 OD2 REMARK 470 ILE A 711 CG1 CG2 CD1 REMARK 470 ILE A 738 CG1 CG2 CD1 REMARK 470 GLU A 753 CD OE1 OE2 REMARK 470 GLU A 755 CG CD OE1 OE2 REMARK 470 LYS A 762 CD CE NZ REMARK 470 LYS A 769 CE NZ REMARK 470 LYS A 777 CG CD CE NZ REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 646 -2.98 61.17 REMARK 500 ASP A 697 49.39 -74.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5O1 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EH0 RELATED DB: PDB REMARK 900 5EH0 CONTAINS THE SAME PROTEIN COMPLEXED WITH N2-(2-METHOXY-4-(1- REMARK 900 METHYL-1H-PYRAZOL-4-YL)PHENYL)-N8-NEOPENTYLPYRIDO[3,4-D]PYRIMIDINE- REMARK 900 2,8-DIAMINE DBREF 5EHO A 519 808 UNP P33981 TTK_HUMAN 519 808 SEQADV 5EHO MET A 496 UNP P33981 INITIATING METHIONINE SEQADV 5EHO HIS A 497 UNP P33981 EXPRESSION TAG SEQADV 5EHO HIS A 498 UNP P33981 EXPRESSION TAG SEQADV 5EHO HIS A 499 UNP P33981 EXPRESSION TAG SEQADV 5EHO HIS A 500 UNP P33981 EXPRESSION TAG SEQADV 5EHO HIS A 501 UNP P33981 EXPRESSION TAG SEQADV 5EHO HIS A 502 UNP P33981 EXPRESSION TAG SEQADV 5EHO SER A 503 UNP P33981 EXPRESSION TAG SEQADV 5EHO SER A 504 UNP P33981 EXPRESSION TAG SEQADV 5EHO GLY A 505 UNP P33981 EXPRESSION TAG SEQADV 5EHO VAL A 506 UNP P33981 EXPRESSION TAG SEQADV 5EHO ASP A 507 UNP P33981 EXPRESSION TAG SEQADV 5EHO LEU A 508 UNP P33981 EXPRESSION TAG SEQADV 5EHO GLY A 509 UNP P33981 EXPRESSION TAG SEQADV 5EHO THR A 510 UNP P33981 EXPRESSION TAG SEQADV 5EHO GLU A 511 UNP P33981 EXPRESSION TAG SEQADV 5EHO ASN A 512 UNP P33981 EXPRESSION TAG SEQADV 5EHO LEU A 513 UNP P33981 EXPRESSION TAG SEQADV 5EHO TYR A 514 UNP P33981 EXPRESSION TAG SEQADV 5EHO PHE A 515 UNP P33981 EXPRESSION TAG SEQADV 5EHO GLN A 516 UNP P33981 EXPRESSION TAG SEQADV 5EHO SER A 517 UNP P33981 EXPRESSION TAG SEQADV 5EHO MET A 518 UNP P33981 EXPRESSION TAG SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR THR SER SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY THR VAL ASN TYR MET SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU SEQRES 25 A 313 GLU HET 5O1 A 901 32 HET DMS A 902 4 HETNAM 5O1 ~{N}8-CYCLOHEXYL-~{N}2-[2-METHOXY-4-(1-METHYLPYRAZOL-4- HETNAM 2 5O1 YL)PHENYL]PYRIDO[3,4-D]PYRIMIDINE-2,8-DIAMINE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 5O1 C24 H27 N7 O FORMUL 3 DMS C2 H6 O S FORMUL 4 HOH *67(H2 O) HELIX 1 AA1 GLU A 558 ALA A 560 5 3 HELIX 2 AA2 ASP A 561 GLN A 579 1 19 HELIX 3 AA3 LEU A 609 LYS A 616 1 8 HELIX 4 AA4 ASP A 620 HIS A 641 1 22 HELIX 5 AA5 LYS A 649 ALA A 651 5 3 HELIX 6 AA6 PRO A 691 ASP A 697 1 7 HELIX 7 AA7 SER A 712 GLY A 730 1 19 HELIX 8 AA8 ASN A 739 ASP A 749 1 11 HELIX 9 AA9 GLU A 761 LEU A 772 1 12 HELIX 10 AB1 SER A 781 ALA A 787 1 7 HELIX 11 AB2 HIS A 788 ILE A 793 1 6 SHEET 1 AA1 6 SER A 517 VAL A 520 0 SHEET 2 AA1 6 ARG A 523 GLY A 534 -1 O TYR A 525 N MET A 518 SHEET 3 AA1 6 SER A 537 LEU A 543 -1 O SER A 537 N GLY A 534 SHEET 4 AA1 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538 SHEET 5 AA1 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551 SHEET 6 AA1 6 LEU A 588 ILE A 593 -1 N ASP A 590 O VAL A 601 SHEET 1 AA2 3 SER A 517 VAL A 520 0 SHEET 2 AA2 3 ARG A 523 GLY A 534 -1 O TYR A 525 N MET A 518 SHEET 3 AA2 3 GLN A 672 PRO A 673 -1 O GLN A 672 N SER A 533 SHEET 1 AA3 3 ILE A 607 ASP A 608 0 SHEET 2 AA3 3 PHE A 653 VAL A 656 -1 O ILE A 655 N ILE A 607 SHEET 3 AA3 3 MET A 659 LEU A 662 -1 O MET A 659 N VAL A 656 SITE 1 AC1 15 ILE A 531 ALA A 551 ILE A 586 MET A 602 SITE 2 AC1 15 GLU A 603 CYS A 604 GLY A 605 ASN A 606 SITE 3 AC1 15 ILE A 607 ASP A 608 SER A 611 LEU A 654 SITE 4 AC1 15 ILE A 663 PRO A 673 HOH A1028 SITE 1 AC2 1 TYR A 554 CRYST1 70.945 105.486 111.692 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008953 0.00000