HEADER LIGASE 30-OCT-15 5EIU TITLE MINI TRIM5 B-BOX 2 DIMER C2 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIM PROTEIN-E3 LIGASE CHIMERA; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: TRIM5 B-BOX 2; COMPND 5 SYNONYM: TRIM5ALPHA,SERYL-TRNA SYNTHETASE,SERRS,SERYL-TRNA(SER/SEC) COMPND 6 SYNTHETASE; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA, THERMUS THERMOPHILUS (STRAIN SOURCE 3 HB27 / ATCC BAA-163 / DSM 7039); SOURCE 4 ORGANISM_COMMON: RHESUS MACAQUE; SOURCE 5 ORGANISM_TAXID: 9544, 262724; SOURCE 6 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 7 GENE: TRIM5, SERS, TT_C0520; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS TRIPARTITE MOTIF, HIV, VIRAL RESTRICTION, TRIM PROTEIN, E3 LIGASE, KEYWDS 2 SELF-ASSEMBLY, PATTERN RECOGNITION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.WAGNER,G.DOSS,O.PORNILLOS REVDAT 4 06-MAR-24 5EIU 1 REMARK REVDAT 3 25-DEC-19 5EIU 1 REMARK REVDAT 2 20-SEP-17 5EIU 1 REMARK REVDAT 1 15-JUN-16 5EIU 0 JRNL AUTH J.M.WAGNER,M.D.ROGANOWICZ,K.SKORUPKA,S.L.ALAM, JRNL AUTH 2 D.E.CHRISTENSEN,G.L.DOSS,Y.WAN,G.A.FRANK, JRNL AUTH 3 B.K.GANSER-PORNILLOS,W.I.SUNDQUIST,O.PORNILLOS JRNL TITL MECHANISM OF B-BOX 2 DOMAIN-MEDIATED HIGHER-ORDER ASSEMBLY JRNL TITL 2 OF THE RETROVIRAL RESTRICTION FACTOR TRIM5 ALPHA. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27253059 JRNL DOI 10.7554/ELIFE.16309 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 25300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4797 - 3.9666 0.99 2789 160 0.1524 0.1642 REMARK 3 2 3.9666 - 3.1492 1.00 2745 130 0.1736 0.2327 REMARK 3 3 3.1492 - 2.7514 1.00 2732 142 0.2120 0.2885 REMARK 3 4 2.7514 - 2.4999 1.00 2716 154 0.2071 0.2347 REMARK 3 5 2.4999 - 2.3208 1.00 2685 126 0.1984 0.2383 REMARK 3 6 2.3208 - 2.1840 1.00 2718 153 0.2001 0.2461 REMARK 3 7 2.1840 - 2.0746 1.00 2717 123 0.2182 0.2219 REMARK 3 8 2.0746 - 1.9843 0.98 2643 149 0.2508 0.3092 REMARK 3 9 1.9843 - 1.9080 0.85 2301 117 0.2967 0.3100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2210 REMARK 3 ANGLE : 1.644 2945 REMARK 3 CHIRALITY : 0.074 319 REMARK 3 PLANARITY : 0.008 391 REMARK 3 DIHEDRAL : 14.615 869 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1250 -18.0041 -57.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.3759 REMARK 3 T33: 0.4010 T12: 0.0809 REMARK 3 T13: -0.0030 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 1.7742 L22: 2.5773 REMARK 3 L33: 4.9790 L12: -2.0098 REMARK 3 L13: -0.4656 L23: -0.1845 REMARK 3 S TENSOR REMARK 3 S11: 0.3173 S12: 0.2443 S13: 0.1971 REMARK 3 S21: -0.0693 S22: -0.0962 S23: -0.1837 REMARK 3 S31: -0.5768 S32: -0.0974 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8736 -26.0888 -31.2715 REMARK 3 T TENSOR REMARK 3 T11: 0.4494 T22: 0.4480 REMARK 3 T33: 0.4602 T12: -0.0571 REMARK 3 T13: 0.0240 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.3722 L22: 2.8616 REMARK 3 L33: 1.4738 L12: -0.9667 REMARK 3 L13: -0.1372 L23: 0.9490 REMARK 3 S TENSOR REMARK 3 S11: -0.5134 S12: -0.1093 S13: -0.3193 REMARK 3 S21: 0.6563 S22: 0.0641 S23: 0.4763 REMARK 3 S31: 0.9315 S32: -0.6502 S33: 0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0226 -18.0588 -29.6667 REMARK 3 T TENSOR REMARK 3 T11: 0.4568 T22: 0.5334 REMARK 3 T33: 0.4282 T12: 0.0875 REMARK 3 T13: -0.0181 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.9488 L22: 1.4255 REMARK 3 L33: 3.2984 L12: -0.9274 REMARK 3 L13: -2.4808 L23: 0.3327 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: -0.0564 S13: 0.1124 REMARK 3 S21: 0.3752 S22: 0.0946 S23: 0.0713 REMARK 3 S31: -0.0955 S32: -0.6649 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 95 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1692 -29.0454 -71.8772 REMARK 3 T TENSOR REMARK 3 T11: 0.3455 T22: 0.5419 REMARK 3 T33: 0.5412 T12: -0.0515 REMARK 3 T13: -0.0675 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.6722 L22: 0.6141 REMARK 3 L33: 1.6179 L12: 0.0780 REMARK 3 L13: -0.6158 L23: 0.1572 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: 0.4650 S13: -0.7013 REMARK 3 S21: -0.1679 S22: -0.2063 S23: 0.9869 REMARK 3 S31: 1.1658 S32: -0.7382 S33: -0.0310 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 106 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9059 -27.7175 -68.4264 REMARK 3 T TENSOR REMARK 3 T11: 0.3603 T22: 0.3417 REMARK 3 T33: 0.4354 T12: -0.0247 REMARK 3 T13: -0.0414 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 2.6566 L22: 0.1278 REMARK 3 L33: 0.6645 L12: -0.5047 REMARK 3 L13: -1.1326 L23: 0.2883 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: -0.3214 S13: -0.2805 REMARK 3 S21: 0.0392 S22: -0.1696 S23: -0.0434 REMARK 3 S31: 0.3034 S32: 0.0895 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 130 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9615 -17.1623 -95.0482 REMARK 3 T TENSOR REMARK 3 T11: 0.9586 T22: 0.7840 REMARK 3 T33: 0.6054 T12: -0.0406 REMARK 3 T13: 0.1966 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.3999 L22: 1.8829 REMARK 3 L33: 1.1180 L12: -0.1859 REMARK 3 L13: -0.0921 L23: 0.5783 REMARK 3 S TENSOR REMARK 3 S11: 0.8651 S12: 1.0091 S13: 0.7504 REMARK 3 S21: -0.8202 S22: 0.1300 S23: -0.2857 REMARK 3 S31: -1.7789 S32: -0.3848 S33: 0.0071 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 174 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1794 -24.6918 -97.5865 REMARK 3 T TENSOR REMARK 3 T11: 0.7133 T22: 0.9387 REMARK 3 T33: 0.5733 T12: -0.0476 REMARK 3 T13: 0.0536 T23: -0.1122 REMARK 3 L TENSOR REMARK 3 L11: 0.5516 L22: 2.5925 REMARK 3 L33: 2.6669 L12: 0.6553 REMARK 3 L13: 0.7542 L23: -0.8878 REMARK 3 S TENSOR REMARK 3 S11: -0.1379 S12: 1.7606 S13: -0.1119 REMARK 3 S21: -0.5741 S22: 0.1464 S23: -0.4873 REMARK 3 S31: 0.0936 S32: -1.0576 S33: -0.0311 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 216 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8121 -25.0439 -86.1240 REMARK 3 T TENSOR REMARK 3 T11: 0.4314 T22: 0.6016 REMARK 3 T33: 0.5274 T12: -0.0864 REMARK 3 T13: 0.0058 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.5554 L22: 0.5444 REMARK 3 L33: 0.9924 L12: 0.1389 REMARK 3 L13: 0.2195 L23: 0.1424 REMARK 3 S TENSOR REMARK 3 S11: 0.2502 S12: -1.0393 S13: -0.5120 REMARK 3 S21: 0.6715 S22: -0.2883 S23: -0.6252 REMARK 3 S31: -0.7731 S32: 1.8730 S33: 0.0113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 1542 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25826 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.11500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THICK RECTANGULAR PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS 7.0, 0.2M NACL, 28% PEG3350, REMARK 280 + (0.025% W/V ALA-ALA, 0.025% W/V ALA-GLY, 0.025% W/V GLY-GLY- REMARK 280 GLY-GLY, 0.025% W/V LEU-GLY-GLY FROM SILVER BULLET), PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.33100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.74400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.33100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.74400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 89 REMARK 465 GLU A 90 REMARK 465 GLY A 91 REMARK 465 GLN A 92 REMARK 465 LYS A 93 REMARK 465 VAL A 94 REMARK 465 LYS A 229 REMARK 465 GLU D 89 REMARK 465 GLU D 90 REMARK 465 GLY D 91 REMARK 465 GLN D 92 REMARK 465 LYS D 93 REMARK 465 VAL D 94 REMARK 465 THR D 227 REMARK 465 LEU D 228 REMARK 465 LYS D 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 GLU D 134 CG CD OE1 OE2 REMARK 470 LYS D 171 CG CD CE NZ REMARK 470 LYS D 185 CG CD CE NZ REMARK 470 GLN D 206 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER D 208 O HOH D 801 1.56 REMARK 500 HH11 ARG D 121 O HOH D 803 1.58 REMARK 500 O HOH A 801 O HOH A 847 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 858 O HOH D 821 2554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 111 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 831 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 HIS A 100 ND1 106.5 REMARK 620 3 CYS A 116 SG 120.7 102.2 REMARK 620 4 CYS A 119 SG 98.0 109.5 119.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 108 SG REMARK 620 2 ASP A 111 OD2 119.9 REMARK 620 3 HIS A 125 ND1 121.9 99.7 REMARK 620 4 HIS A 128 ND1 105.3 94.5 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 97 SG REMARK 620 2 HIS D 100 ND1 103.6 REMARK 620 3 CYS D 116 SG 121.7 101.5 REMARK 620 4 CYS D 119 SG 102.9 108.9 117.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 108 SG REMARK 620 2 ASP D 111 OD2 112.1 REMARK 620 3 HIS D 125 ND1 125.2 96.1 REMARK 620 4 HIS D 128 ND1 106.1 94.1 118.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 702 DBREF 5EIU A 89 159 UNP Q0PF16 TRIM5_MACMU 89 159 DBREF 5EIU A 160 189 UNP P34945 SYS_THET2 49 78 DBREF 5EIU A 190 229 UNP Q0PF16 TRIM5_MACMU 226 265 DBREF 5EIU D 89 159 UNP Q0PF16 TRIM5_MACMU 89 159 DBREF 5EIU D 160 189 UNP P34945 SYS_THET2 49 78 DBREF 5EIU D 190 229 UNP Q0PF16 TRIM5_MACMU 226 265 SEQRES 1 A 141 GLU GLU GLY GLN LYS VAL ASP HIS CYS ALA ARG HIS GLY SEQRES 2 A 141 GLU LYS LEU LEU LEU PHE CYS GLN GLU ASP SER LYS VAL SEQRES 3 A 141 ILE CYS TRP LEU CYS GLU ARG SER GLN GLU HIS ARG GLY SEQRES 4 A 141 HIS HIS THR PHE LEU MET GLU GLU VAL ALA GLN GLU TYR SEQRES 5 A 141 HIS VAL LYS LEU GLN THR ALA LEU GLU MET LEU ARG GLN SEQRES 6 A 141 LYS GLN GLN GLU ALA GLU THR GLU ARG ASN GLN VAL ALA SEQRES 7 A 141 LYS ARG VAL PRO LYS ALA PRO PRO GLU GLU LYS GLU ALA SEQRES 8 A 141 LEU ILE ALA ARG GLY LYS ALA LEU GLY GLU GLN THR GLN SEQRES 9 A 141 TYR MET ARG GLU LEU ILE SER GLU LEU GLU HIS ARG LEU SEQRES 10 A 141 GLN GLY SER MET MET ASP LEU LEU GLN GLY VAL ASP GLY SEQRES 11 A 141 ILE ILE LYS ARG ILE GLU ASN MET THR LEU LYS SEQRES 1 D 141 GLU GLU GLY GLN LYS VAL ASP HIS CYS ALA ARG HIS GLY SEQRES 2 D 141 GLU LYS LEU LEU LEU PHE CYS GLN GLU ASP SER LYS VAL SEQRES 3 D 141 ILE CYS TRP LEU CYS GLU ARG SER GLN GLU HIS ARG GLY SEQRES 4 D 141 HIS HIS THR PHE LEU MET GLU GLU VAL ALA GLN GLU TYR SEQRES 5 D 141 HIS VAL LYS LEU GLN THR ALA LEU GLU MET LEU ARG GLN SEQRES 6 D 141 LYS GLN GLN GLU ALA GLU THR GLU ARG ASN GLN VAL ALA SEQRES 7 D 141 LYS ARG VAL PRO LYS ALA PRO PRO GLU GLU LYS GLU ALA SEQRES 8 D 141 LEU ILE ALA ARG GLY LYS ALA LEU GLY GLU GLN THR GLN SEQRES 9 D 141 TYR MET ARG GLU LEU ILE SER GLU LEU GLU HIS ARG LEU SEQRES 10 D 141 GLN GLY SER MET MET ASP LEU LEU GLN GLY VAL ASP GLY SEQRES 11 D 141 ILE ILE LYS ARG ILE GLU ASN MET THR LEU LYS HET ZN A 701 1 HET ZN A 702 1 HET ZN D 701 1 HET ZN D 702 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *99(H2 O) HELIX 1 AA1 CYS A 116 SER A 122 1 7 HELIX 2 AA2 MET A 133 ALA A 172 1 40 HELIX 3 AA3 PRO A 173 GLY A 207 1 35 HELIX 4 AA4 SER A 208 GLN A 214 1 7 HELIX 5 AA5 GLY A 215 MET A 226 1 12 HELIX 6 AA6 CYS D 116 ARG D 121 1 6 HELIX 7 AA7 SER D 122 ARG D 126 5 5 HELIX 8 AA8 MET D 133 VAL D 169 1 37 HELIX 9 AA9 PRO D 173 GLY D 207 1 35 HELIX 10 AB1 SER D 208 GLN D 214 1 7 HELIX 11 AB2 GLY D 215 ASN D 225 1 11 SHEET 1 AA1 3 LYS A 113 ILE A 115 0 SHEET 2 AA1 3 LEU A 106 CYS A 108 -1 N CYS A 108 O LYS A 113 SHEET 3 AA1 3 THR A 130 LEU A 132 -1 O PHE A 131 N PHE A 107 SHEET 1 AA2 3 LYS D 113 ILE D 115 0 SHEET 2 AA2 3 LEU D 106 CYS D 108 -1 N CYS D 108 O LYS D 113 SHEET 3 AA2 3 THR D 130 LEU D 132 -1 O PHE D 131 N PHE D 107 LINK SG CYS A 97 ZN ZN A 702 1555 1555 2.33 LINK ND1 HIS A 100 ZN ZN A 702 1555 1555 2.03 LINK SG CYS A 108 ZN ZN A 701 1555 1555 2.30 LINK OD2 ASP A 111 ZN ZN A 701 1555 1555 2.04 LINK SG CYS A 116 ZN ZN A 702 1555 1555 2.36 LINK SG CYS A 119 ZN ZN A 702 1555 1555 2.32 LINK ND1 HIS A 125 ZN ZN A 701 1555 1555 1.98 LINK ND1 HIS A 128 ZN ZN A 701 1555 1555 1.94 LINK SG CYS D 97 ZN ZN D 702 1555 1555 2.32 LINK ND1 HIS D 100 ZN ZN D 702 1555 1555 2.03 LINK SG CYS D 108 ZN ZN D 701 1555 1555 2.28 LINK OD2 ASP D 111 ZN ZN D 701 1555 1555 2.04 LINK SG CYS D 116 ZN ZN D 702 1555 1555 2.30 LINK SG CYS D 119 ZN ZN D 702 1555 1555 2.30 LINK ND1 HIS D 125 ZN ZN D 701 1555 1555 1.99 LINK ND1 HIS D 128 ZN ZN D 701 1555 1555 2.02 SITE 1 AC1 4 CYS A 108 ASP A 111 HIS A 125 HIS A 128 SITE 1 AC2 4 CYS A 97 HIS A 100 CYS A 116 CYS A 119 SITE 1 AC3 4 CYS D 108 ASP D 111 HIS D 125 HIS D 128 SITE 1 AC4 4 CYS D 97 HIS D 100 CYS D 116 CYS D 119 CRYST1 72.662 41.488 111.301 90.00 99.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013762 0.000000 0.002196 0.00000 SCALE2 0.000000 0.024103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009098 0.00000